Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

81477876 .. 81479236

Gene Structure 1361 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTTGCATGTCTGATTGCGCTTCTGTATTTTGTGTATTACCAGTTCATTGGTGCCTGCAAAGAACCTGTCATGGTCATAGTGACTGAGCTTCTTCTTGGGGGGACTCTGCGCAAATACTTGTTCAGTATGCGGCCAAGGTGCTTGGACATGCCTGTGGCAGTTGGGTTTGCACTTGATATTGCTCGTGCTATGGAATGCTTACACTCTCATGGAATCATTCACCGGGACCTGAAACCTGAGAACTTGATTTTGACTGCAGACCATAAAACAGTTAAACTTGCGGATTTTGGCTTAGCAAGAGAAGAGTCATTAACAGAAATGATGACTGCTGAAACTGGGACATACCGGTGGATGGCTCCTGAGCTTTATAGCACAGTTACATTAAGACATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGCTTATAGCTTTGCAATTGTATTGTGGGAACTCATTCATAATAAGCTGCCCTTTGAAGGCATGTCAAATTTGCAAGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCAAGTGCTGAAGACCTGCCAGAGGATTTGGCTTTGATAGTAACCTCATGTTGGAAAGAGGATCCAAATGATCGGCCCAACTTTAGCCAAATTATACAGATGCTTATGCATTATCTCTCTACTATTTCACCATCAAAACCCGCAATCCCCCAACGGATATTCAGATCTGATAATGCTGTACTGCCTCCTGAGTCTCCCGGTACTAGTTCTTTGATGGCTACACACAATGAATCGGGCGAAACCCCTAAAGCGGACATGGAAGAGAAGCCCAAAGGTTTTTTCTTCTGCTTTAACATGTGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

280

Amino Acids

31.58

Weight (kDa)

6.06

Isoelectric Point (pI)

57.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 213	6.7e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	22 - 211	2.3e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	53
AciI	CCGC	4 cut(s)	133, 284, 675, 785
AclWI	GGATC	2 cut(s)	590, 603
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	493
AcuI	CTGAAG	1 cut(s)	564
AfaI	GTAC	2 cut(s)	714, 736
AfiI	CCNNNNNNNGG	5 cut(s)	355, 482, 556, 585, 784
AflIII	ACRYGT	1 cut(s)	828
AgeI	ACCGGT	1 cut(s)	348
AgsI	TTSAA	1 cut(s)	482
AhlI	ACTAGT	1 cut(s)	737
AjuI	GAANNNNNNNTTGG	2 cut(s)	797, 829
AluBI	AGCT	5 cut(s)	91, 367, 435, 472, 515
AluI	AGCT	5 cut(s)	91, 367, 435, 472, 515
Alw26I	GTCTC	1 cut(s)	732
AlwI	GGATC	2 cut(s)	590, 603
AoxI	GGCC	3 cut(s)	134, 533, 608
ApeKI	GCWGC	4 cut(s)	472, 503, 512, 515
ApoI	RAATTY	1 cut(s)	493
ArsI	GACNNNNNNTTYG	2 cut(s)	54, 86
AsiGI	ACCGGT	1 cut(s)	348
Asp700I	GAANNNNTTC	1 cut(s)	459
AspLEI	GCGC	2 cut(s)	22, 114
AspS9I	GGNCC	2 cut(s)	229, 609
AsuC2I	CCSGG	2 cut(s)	227, 732
AsuHPI	GGTGA	2 cut(s)	215, 654
AvaII	GGWCC	1 cut(s)	229
BamHI	GGATCC	1 cut(s)	595
BanI	GGYRCC	1 cut(s)	53
BarI	GAAGNNNNNNTAC	2 cut(s)	392, 424
BauI	CACGAG	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	4 cut(s)	459, 502, 515, 524
BccI	CCATC	3 cut(s)	349, 673, 742
BcnI	CCSGG	2 cut(s)	227, 732
BcoDI	GTCTC	1 cut(s)	732
BcuI	ACTAGT	1 cut(s)	737
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	258
BfuAI	ACCTGC	1 cut(s)	558
BglII	AGATCT	1 cut(s)	698
BisI	GCNGC	5 cut(s)	134, 473, 504, 513, 516
BlpI	GCTNAGC	1 cut(s)	295
BlsI	GCNGC	5 cut(s)	135, 474, 505, 514, 517
Bme1390I	CCNGG	2 cut(s)	227, 732
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	2 cut(s)	229, 609
BmiI	GGNNCC	4 cut(s)	55, 230, 360, 597
BmrFI	CCNGG	2 cut(s)	227, 732
BmrI	ACTGGG	1 cut(s)	348
BmsI	GCATC	2 cut(s)	415, 624
BmuI	ACTGGG	1 cut(s)	348
BpiI	GAAGAC	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	295
BpuMI	CCSGG	2 cut(s)	227, 732
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	348
Bsc4I	CCNNNNNNNGG	5 cut(s)	355, 482, 556, 585, 784
Bse118I	RCCGGY	1 cut(s)	348
Bse1I	ACTGG	2 cut(s)	43, 343
BseDI	CCNNGG	1 cut(s)	137
BseGI	GGATG	2 cut(s)	360, 430
BseLI	CCNNNNNNNGG	5 cut(s)	355, 482, 556, 585, 784
BseMII	CTCAG	4 cut(s)	78, 231, 354, 714
BseNI	ACTGG	2 cut(s)	43, 343
BseXI	GCAGC	4 cut(s)	459, 502, 515, 524
BshFI	GGCC	3 cut(s)	136, 535, 610
BshNI	GGYRCC	1 cut(s)	53
BshTI	ACCGGT	1 cut(s)	348
BsiSI	CCGG	3 cut(s)	226, 349, 732
BslFI	GGGAC	3 cut(s)	118, 242, 355
BslI	CCNNNNNNNGG	5 cut(s)	355, 482, 556, 585, 784
BsmAI	GTCTC	1 cut(s)	732
BsmFI	GGGAC	3 cut(s)	118, 242, 355
BsmI	GAATGC	1 cut(s)	203
BsnI	GGCC	3 cut(s)	136, 535, 610
Bsp143I	GATC	3 cut(s)	595, 604, 698
Bsp1720I	GCTNAGC	1 cut(s)	295
BspACI	CCGC	4 cut(s)	133, 284, 675, 785
BspANI	GGCC	3 cut(s)	136, 535, 610
BspCNI	CTCAG	4 cut(s)	79, 232, 355, 715
BspLI	GGNNCC	4 cut(s)	55, 230, 360, 597
BspMAI	CTGCAG	1 cut(s)	262
BspMI	ACCTGC	1 cut(s)	558
BspPI	GGATC	2 cut(s)	590, 603
BspT107I	GGYRCC	1 cut(s)	53
BsrFI	RCCGGY	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	43, 343
BssAI	RCCGGY	1 cut(s)	348
BssECI	CCNNGG	1 cut(s)	137
BssMI	GATC	3 cut(s)	595, 604, 698
BssSI	CACGAG	1 cut(s)	186
BssT1I	CCWWGG	1 cut(s)	137
Bst2BI	CACGAG	1 cut(s)	186
Bst4CI	ACNGT	2 cut(s)	274, 379
Bst6I	CTCTTC	2 cut(s)	300, 789
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstC8I	GCNNGC	2 cut(s)	58, 501
BstDEI	CTNAG	5 cut(s)	87, 240, 295, 363, 723
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	360, 430
BstHHI	GCGC	2 cut(s)	22, 114
BstKTI	GATC	3 cut(s)	598, 607, 701
BstMAI	GTCTC	1 cut(s)	732
BstMBI	GATC	3 cut(s)	595, 604, 698
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 512
BstNSI	RCATGY	4 cut(s)	12, 154, 490, 832
BstSCI	CCNGG	2 cut(s)	225, 730
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	4 cut(s)	459, 502, 515, 524
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	2 cut(s)	595, 698
BstXI	CCANNNNNNTGG	1 cut(s)	50
BstYI	RGATCY	2 cut(s)	595, 698
BsuRI	GGCC	3 cut(s)	136, 535, 610
BtsCI	GGATG	2 cut(s)	360, 430
BveI	ACCTGC	1 cut(s)	558
Cac8I	GCNNGC	2 cut(s)	58, 501
CfoI	GCGC	2 cut(s)	22, 114
Cfr10I	RCCGGY	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	229, 609
Csp6I	GTAC	2 cut(s)	713, 735
CspAI	ACCGGT	1 cut(s)	348
CviAII	CATG	9 cut(s)	9, 73, 151, 212, 392, 487, 582, 790, 829
CviQI	GTAC	2 cut(s)	713, 735
DdeI	CTNAG	5 cut(s)	87, 240, 295, 363, 723
DpnI	GATC	3 cut(s)	597, 606, 700
DpnII	GATC	3 cut(s)	595, 604, 698
EaeI	YGGCCR	1 cut(s)	134
Eam1104I	CTCTTC	2 cut(s)	300, 789
EarI	CTCTTC	2 cut(s)	300, 789
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	564
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	645
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	9 cut(s)	12, 76, 154, 215, 395, 490, 585, 793, 832
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	3 cut(s)	118, 242, 355
FatI	CATG	9 cut(s)	8, 72, 150, 211, 391, 486, 581, 789, 828
FauI	CCCGC	1 cut(s)	682
FauNDI	CATATG	1 cut(s)	508
Fnu4HI	GCNGC	5 cut(s)	134, 473, 504, 513, 516
FokI	GGATG	2 cut(s)	367, 437
Fsp4HI	GCNGC	5 cut(s)	134, 473, 504, 513, 516
FspBI	CTAG	1 cut(s)	738
FspI	TGCGCA	1 cut(s)	113
GlaI	GCGC	2 cut(s)	21, 113
GluI	GCNGC	5 cut(s)	134, 473, 504, 513, 516
HaeIII	GGCC	3 cut(s)	136, 535, 610
HapII	CCGG	3 cut(s)	226, 349, 732
HhaI	GCGC	2 cut(s)	22, 114
Hin1II	CATG	9 cut(s)	12, 76, 154, 215, 395, 490, 585, 793, 832
Hin6I	GCGC	2 cut(s)	20, 112
HinP1I	GCGC	2 cut(s)	20, 112
HinfI	GANTC	5 cut(s)	106, 216, 308, 725, 764
HpaII	CCGG	3 cut(s)	226, 349, 732
HphI	GGTGA	2 cut(s)	215, 654
Hpy188I	TCNGA	3 cut(s)	15, 698, 703
Hpy188III	TCNNGA	2 cut(s)	362, 722
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	2 cut(s)	274, 379
HpyCH4V	TGCA	8 cut(s)	8, 60, 173, 260, 440, 499, 512, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 512
HpyF3I	CTNAG	5 cut(s)	87, 240, 295, 363, 723
Hsp92II	CATG	9 cut(s)	12, 76, 154, 215, 395, 490, 585, 793, 832
HspAI	GCGC	2 cut(s)	20, 112
Kzo9I	GATC	3 cut(s)	595, 604, 698
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	4 cut(s)	459, 502, 515, 524
LweI	GCATC	2 cut(s)	415, 624
MaeI	CTAG	1 cut(s)	738
MaeIII	GTNAC	3 cut(s)	82, 379, 574
MalI	GATC	3 cut(s)	597, 606, 700
MboI	GATC	3 cut(s)	595, 604, 698
MboII	GAAGA	6 cut(s)	86, 317, 412, 557, 806, 808
MfeI	CAATTG	1 cut(s)	441
MflI	RGATCY	2 cut(s)	595, 698
MluCI	AATT	3 cut(s)	441, 493, 624
MlyI	GAGTC	3 cut(s)	100, 317, 734
MmeI	TCCRAC	1 cut(s)	566
MnlI	CCTC	5 cut(s)	525, 550, 586, 589, 729
Mph1103I	ATGCAT	1 cut(s)	645
MroXI	GAANNNNTTC	1 cut(s)	459
MseI	TTAA	5 cut(s)	276, 314, 386, 522, 825
MslI	CAYNNNNRTG	3 cut(s)	155, 210, 349
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	3 cut(s)	226, 349, 732
MspR9I	CCNGG	2 cut(s)	227, 732
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	509, 512
NciI	CCSGG	2 cut(s)	227, 732
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	3 cut(s)	595, 604, 698
NlaIII	CATG	9 cut(s)	12, 76, 154, 215, 395, 490, 585, 793, 832
NlaIV	GGNNCC	4 cut(s)	55, 230, 360, 597
NmuCI	GTSAC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	645
NspI	RCATGY	4 cut(s)	12, 154, 490, 832
PciI	ACATGT	1 cut(s)	828
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	216, 764
PinAI	ACCGGT	1 cut(s)	348
PkrI	GCNGC	5 cut(s)	135, 474, 505, 514, 517
PleI	GAGTC	3 cut(s)	100, 316, 733
PpsI	GAGTC	3 cut(s)	100, 316, 733
PpuMI	RGGWCCY	1 cut(s)	229
PscI	ACATGT	1 cut(s)	828
Psp5II	RGGWCCY	1 cut(s)	229
PspN4I	GGNNCC	4 cut(s)	55, 230, 360, 597
PspPI	GGNCC	2 cut(s)	229, 609
PspPPI	RGGWCCY	1 cut(s)	229
PsrI	GAACNNNNNNTAC	2 cut(s)	29, 61
PstI	CTGCAG	1 cut(s)	262
PsuI	RGATCY	2 cut(s)	595, 698
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	714, 736
RsaNI	GTAC	2 cut(s)	713, 735
RseI	CAYNNNNRTG	3 cut(s)	155, 210, 349
SaqAI	TTAA	5 cut(s)	276, 314, 386, 522, 825
SatI	GCNGC	5 cut(s)	134, 473, 504, 513, 516
Sau3AI	GATC	3 cut(s)	595, 604, 698
Sau96I	GGNCC	2 cut(s)	229, 609
SchI	GAGTC	3 cut(s)	100, 317, 734
ScrFI	CCNGG	2 cut(s)	227, 732
SfaNI	GCATC	2 cut(s)	415, 624
SfcI	CTRYAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	3 cut(s)	155, 210, 349
SpeI	ACTAGT	1 cut(s)	737
Sse9I	AATT	3 cut(s)	441, 493, 624
SsiI	CCGC	4 cut(s)	133, 284, 675, 785
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	2 cut(s)	225, 730
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	2 cut(s)	274, 379
TasI	AATT	3 cut(s)	441, 493, 624
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	1 cut(s)	136
TfiI	GAWTC	2 cut(s)	216, 764
Tru1I	TTAA	5 cut(s)	276, 314, 386, 522, 825
Tru9I	TTAA	5 cut(s)	276, 314, 386, 522, 825
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	4 cut(s)	472, 503, 512, 515
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	3 cut(s)	37, 452, 777
TspGWI	ACGGA	1 cut(s)	703
VpaK11BI	GGWCC	1 cut(s)	229
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	4 cut(s)	12, 154, 490, 832
XmnI	GAANNNNTTC	1 cut(s)	459
XspI	CTAG	1 cut(s)	738
Zsp2I	ATGCAT	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.