Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

38260750 .. 38263595

Gene Structure 2846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGGGAGCAGCTGGGGGTTTGGATTTAGATGCCAAGTGGCTTATTGATCCGAAACATCTTTTTGTTGGTCCCAGAATTGGGGAGGGTGCTCATGCCAAAGTCTATGAGGGAAAATATAAGAATCAAAATGTTGCTGTGAAAATTGTCAATAGAGGAGAGACCCCAGAAGAGATTGCCAAGAGAGAAGCACGGTTTGCAAGGGAGGTGGCTATGTTGTCCAGAGTGCAGCATAAAAATTTAGTGAAGTTCATTGGTGCCTGCAAAGAACCTGTCATGGTCATAGTGACCGAGCTTCTTCTGGGTGGGACTCTGCGCAAATACCTGTTCAGTATGCGTCCGAGGTGCTTGGACATGCCCGTGGCAGTTGGGTTTGCACTTGATATTGCTCGTGCTATGGAATGCTTACACTCCCATGGAATCATTCACCGGGACCTGAAACCTGAGAATTTGATTTTGACTGCAGACCATAAAACAGTTAAACTTGCCGATTTTGGCTTAGCAAGAGAAGAGTCATTAACAGAAATGATGACTGCTGAAACTGGGACATACCGATGGATGGCGCCTGAGCTTTATAGCACAGTTACATTAAGACATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGCTTATAGCTTTGCAATTGTATTATGGGAACTCATTCATAATAAGCTGCCATTTGAAGGCATGTCCAATCTGCAAGCAGCATATGCAGCTGCTTTTAAGAATGTGAGGCCAAGTGCTGAAGACCTGCCAGAGGATTTGGCATTGATAGTAACCTCATGTTGGAAAGAGGATCCAAATGATCGGCCCAACTTTAGCCAAATTATACAGATGCTACTGCATTATCTCTCTACTATTACACCGTCAAAACCAGCAATCCCCCAACGAATATTCAGATCTGATAATGCTGTACTGCCACCAGAGTCCCCCGGTACTAGTTCTTTGATGGCTACACACGATGAATCGGGTGAAACACCTAAAGCAGACATGCAGGAGAAACCTAAAGGTTTTTTCTTCTGCTTTAACCAATGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

347

Amino Acids

38.84

Weight (kDa)

7.21

Isoelectric Point (pI)

42.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	10 - 208	6.5e-42	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	18 - 207	2.7e-37	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	759
AccB1I	GGYRCC	2 cut(s)	254, 559
AclWI	GGATC	3 cut(s)	41, 791, 804
AcsI	RAATTY	2 cut(s)	235, 445
AcuI	CTGAAG	1 cut(s)	765
AcyI	GRCGYC	1 cut(s)	560
AfaI	GTAC	2 cut(s)	915, 937
AfiI	CCNNNNNNNGG	6 cut(s)	77, 78, 556, 683, 757, 786
AgsI	TTSAA	1 cut(s)	683
AhlI	ACTAGT	1 cut(s)	938
AluBI	AGCT	6 cut(s)	11, 292, 568, 636, 673, 716
AluI	AGCT	6 cut(s)	11, 292, 568, 636, 673, 716
Alw21I	GWGCWC	1 cut(s)	91
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	3 cut(s)	41, 791, 804
AoxI	GGCC	2 cut(s)	734, 809
ApeKI	GCWGC	6 cut(s)	8, 226, 673, 704, 713, 716
ApoI	RAATTY	2 cut(s)	235, 445
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp700I	GAANNNNTTC	1 cut(s)	660
AspLEI	GCGC	2 cut(s)	315, 562
AspS9I	GGNCC	3 cut(s)	68, 430, 810
AsuC2I	CCSGG	2 cut(s)	428, 933
AsuHPI	GGTGA	2 cut(s)	416, 983
AvaII	GGWCC	2 cut(s)	68, 430
BamHI	GGATCC	1 cut(s)	796
BanI	GGYRCC	2 cut(s)	254, 559
BarI	GAAGNNNNNNTAC	2 cut(s)	593, 625
BauI	CACGAG	1 cut(s)	387
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	91
BbvI	GCAGC	6 cut(s)	20, 238, 660, 703, 716, 725
BccI	CCATC	3 cut(s)	546, 550, 943
BcnI	CCSGG	2 cut(s)	428, 933
BcoDI	GTCTC	1 cut(s)	152
BcuI	ACTAGT	1 cut(s)	938
BfaI	CTAG	1 cut(s)	939
BfmI	CTRYAG	1 cut(s)	459
BfoI	RGCGCY	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	759
BglII	AGATCT	1 cut(s)	899
BisI	GCNGC	6 cut(s)	9, 227, 674, 705, 714, 717
BlpI	GCTNAGC	1 cut(s)	496
BlsI	GCNGC	6 cut(s)	10, 228, 675, 706, 715, 718
Bme1390I	CCNGG	2 cut(s)	428, 933
Bme18I	GGWCC	2 cut(s)	68, 430
BmgT120I	GGNCC	3 cut(s)	68, 430, 810
BmiI	GGNNCC	5 cut(s)	70, 256, 431, 561, 798
BmrFI	CCNGG	2 cut(s)	428, 933
BmrI	ACTGGG	1 cut(s)	549
BmsI	GCATC	3 cut(s)	19, 616, 825
BmuI	ACTGGG	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	496
BpuMI	CCSGG	2 cut(s)	428, 933
BsaHI	GRCGYC	1 cut(s)	560
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	4 cut(s)	338, 357, 412, 931
Bsc4I	CCNNNNNNNGG	6 cut(s)	77, 78, 556, 683, 757, 786
Bse1I	ACTGG	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	338, 357, 412, 931
BseGI	GGATG	2 cut(s)	561, 631
BseLI	CCNNNNNNNGG	6 cut(s)	77, 78, 556, 683, 757, 786
BseMII	CTCAG	2 cut(s)	432, 555
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	1 cut(s)	168
BseXI	GCAGC	6 cut(s)	20, 238, 660, 703, 716, 725
BseYI	CCCAGC	1 cut(s)	11
BsgI	GTGCAG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	736, 811
BshNI	GGYRCC	2 cut(s)	254, 559
BsiHKAI	GWGCWC	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	427, 933
BslFI	GGGAC	5 cut(s)	54, 319, 443, 556, 913
BslI	CCNNNNNNNGG	6 cut(s)	77, 78, 556, 683, 757, 786
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	5 cut(s)	54, 319, 443, 556, 913
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	736, 811
Bso31I	GGTCTC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	46, 796, 805, 899
Bsp1720I	GCTNAGC	1 cut(s)	496
Bsp19I	CCATGG	1 cut(s)	412
BspANI	GGCC	2 cut(s)	736, 811
BspCNI	CTCAG	2 cut(s)	433, 556
BspLI	GGNNCC	5 cut(s)	70, 256, 431, 561, 798
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	759
BspPI	GGATC	3 cut(s)	41, 791, 804
BspT107I	GGYRCC	2 cut(s)	254, 559
BspTNI	GGTCTC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	338, 357, 412, 931
BssMI	GATC	4 cut(s)	46, 796, 805, 899
BssNI	GRCGYC	1 cut(s)	560
BssSI	CACGAG	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	412
Bst2BI	CACGAG	1 cut(s)	387
Bst4CI	ACNGT	4 cut(s)	192, 475, 580, 867
Bst6I	CTCTTC	2 cut(s)	162, 501
BstACI	GRCGYC	1 cut(s)	560
BstAPI	GCANNNNNTGC	2 cut(s)	194, 710
BstC8I	GCNNGC	2 cut(s)	259, 702
BstDEI	CTNAG	3 cut(s)	441, 496, 564
BstDSI	CCRYGG	2 cut(s)	357, 412
BstENI	CCTNNNNNAGG	1 cut(s)	755
BstF5I	GGATG	2 cut(s)	561, 631
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	2 cut(s)	315, 562
BstKTI	GATC	4 cut(s)	49, 799, 808, 902
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	4 cut(s)	46, 796, 805, 899
BstMWI	GCNNNNNNNGC	3 cut(s)	194, 710, 713
BstNSI	RCATGY	3 cut(s)	355, 691, 994
BstSCI	CCNGG	2 cut(s)	426, 931
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	6 cut(s)	20, 238, 660, 703, 716, 725
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	2 cut(s)	796, 899
BstYI	RGATCY	2 cut(s)	796, 899
BsuRI	GGCC	2 cut(s)	736, 811
BtgI	CCRYGG	2 cut(s)	357, 412
BtsCI	GGATG	2 cut(s)	561, 631
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	2 cut(s)	259, 702
CfoI	GCGC	2 cut(s)	315, 562
Cfr13I	GGNCC	3 cut(s)	68, 430, 810
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	2 cut(s)	914, 936
CspCI	CAANNNNNGTGG	2 cut(s)	186, 221
CviAII	CATG	8 cut(s)	92, 274, 352, 413, 593, 688, 783, 991
CviQI	GTAC	2 cut(s)	914, 936
DdeI	CTNAG	3 cut(s)	441, 496, 564
DinI	GGCGCC	1 cut(s)	561
DpnI	GATC	4 cut(s)	48, 798, 807, 901
DpnII	GATC	4 cut(s)	46, 796, 805, 899
Eam1104I	CTCTTC	2 cut(s)	162, 501
EarI	CTCTTC	2 cut(s)	162, 501
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	2 cut(s)	68, 430
Eco57I	CTGAAG	1 cut(s)	765
EcoNI	CCTNNNNNAGG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	412
EgeI	GGCGCC	1 cut(s)	561
EheI	GGCGCC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	8 cut(s)	95, 277, 355, 416, 596, 691, 786, 994
FaqI	GGGAC	5 cut(s)	54, 319, 443, 556, 913
FatI	CATG	8 cut(s)	91, 273, 351, 412, 592, 687, 782, 990
FauNDI	CATATG	1 cut(s)	709
Fnu4HI	GCNGC	6 cut(s)	9, 227, 674, 705, 714, 717
FokI	GGATG	2 cut(s)	568, 638
Fsp4HI	GCNGC	6 cut(s)	9, 227, 674, 705, 714, 717
FspBI	CTAG	1 cut(s)	939
FspI	TGCGCA	1 cut(s)	314
GlaI	GCGC	2 cut(s)	314, 561
GluI	GCNGC	6 cut(s)	9, 227, 674, 705, 714, 717
GsaI	CCCAGC	1 cut(s)	15
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	2 cut(s)	736, 811
HapII	CCGG	2 cut(s)	427, 933
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	315, 562
Hin1I	GRCGYC	1 cut(s)	560
Hin1II	CATG	8 cut(s)	95, 277, 355, 416, 596, 691, 786, 994
Hin6I	GCGC	2 cut(s)	313, 560
HinP1I	GCGC	2 cut(s)	313, 560
HinfI	GANTC	6 cut(s)	121, 307, 417, 509, 926, 965
HpaII	CCGG	2 cut(s)	427, 933
HphI	GGTGA	2 cut(s)	416, 983
Hpy188I	TCNGA	4 cut(s)	51, 339, 899, 904
Hpy188III	TCNNGA	1 cut(s)	219
HpyAV	CCTTC	1 cut(s)	677
HpyCH4III	ACNGT	4 cut(s)	192, 475, 580, 867
HpyF10VI	GCNNNNNNNGC	3 cut(s)	194, 710, 713
HpyF3I	CTNAG	3 cut(s)	441, 496, 564
Hsp92I	GRCGYC	1 cut(s)	560
Hsp92II	CATG	8 cut(s)	95, 277, 355, 416, 596, 691, 786, 994
HspAI	GCGC	2 cut(s)	313, 560
KasI	GGCGCC	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	46, 796, 805, 899
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	6 cut(s)	20, 238, 660, 703, 716, 725
LweI	GCATC	3 cut(s)	19, 616, 825
MaeI	CTAG	1 cut(s)	939
MaeIII	GTNAC	3 cut(s)	283, 580, 775
MalI	GATC	4 cut(s)	48, 798, 807, 901
MboI	GATC	4 cut(s)	46, 796, 805, 899
MboII	GAAGA	6 cut(s)	179, 287, 518, 613, 758, 1009
MfeI	CAATTG	1 cut(s)	642
MflI	RGATCY	2 cut(s)	796, 899
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	6 cut(s)	75, 141, 235, 445, 642, 825
Mly113I	GGCGCC	1 cut(s)	560
MlyI	GAGTC	3 cut(s)	301, 518, 935
MmeI	TCCRAC	1 cut(s)	767
MnlI	CCTC	9 cut(s)	76, 100, 146, 196, 333, 726, 751, 787, 790
MroXI	GAANNNNTTC	1 cut(s)	660
MseI	TTAA	5 cut(s)	477, 515, 587, 723, 1026
MslI	CAYNNNNRTG	3 cut(s)	356, 411, 550
MspA1I	CMGCKG	2 cut(s)	11, 716
MspI	CCGG	2 cut(s)	427, 933
MspR9I	CCNGG	2 cut(s)	428, 933
MunI	CAATTG	1 cut(s)	642
Mva1269I	GAATGC	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	194, 710, 713
NarI	GGCGCC	1 cut(s)	560
NciI	CCSGG	2 cut(s)	428, 933
NcoI	CCATGG	1 cut(s)	412
NdeI	CATATG	1 cut(s)	709
NdeII	GATC	4 cut(s)	46, 796, 805, 899
NlaIII	CATG	8 cut(s)	95, 277, 355, 416, 596, 691, 786, 994
NlaIV	GGNNCC	5 cut(s)	70, 256, 431, 561, 798
NmuCI	GTSAC	1 cut(s)	283
NsbI	TGCGCA	1 cut(s)	314
NspI	RCATGY	3 cut(s)	355, 691, 994
PctI	GAATGC	1 cut(s)	404
PdmI	GAANNNNTTC	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	121, 417, 965
PkrI	GCNGC	6 cut(s)	10, 228, 675, 706, 715, 718
PleI	GAGTC	3 cut(s)	301, 517, 934
PluTI	GGCGCC	1 cut(s)	563
PpsI	GAGTC	3 cut(s)	301, 517, 934
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	11
PspN4I	GGNNCC	5 cut(s)	70, 256, 431, 561, 798
PspPI	GGNCC	3 cut(s)	68, 430, 810
PspPPI	RGGWCCY	1 cut(s)	430
PstI	CTGCAG	1 cut(s)	463
PsuI	RGATCY	2 cut(s)	796, 899
PvuII	CAGCTG	2 cut(s)	11, 716
RsaI	GTAC	2 cut(s)	915, 937
RsaNI	GTAC	2 cut(s)	914, 936
RseI	CAYNNNNRTG	3 cut(s)	356, 411, 550
SaqAI	TTAA	5 cut(s)	477, 515, 587, 723, 1026
SatI	GCNGC	6 cut(s)	9, 227, 674, 705, 714, 717
Sau3AI	GATC	4 cut(s)	46, 796, 805, 899
Sau96I	GGNCC	3 cut(s)	68, 430, 810
SchI	GAGTC	3 cut(s)	301, 518, 935
ScrFI	CCNGG	2 cut(s)	428, 933
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	3 cut(s)	19, 616, 825
SfcI	CTRYAG	1 cut(s)	459
SfoI	GGCGCC	1 cut(s)	561
SinI	GGWCC	2 cut(s)	68, 430
SmiMI	CAYNNNNRTG	3 cut(s)	356, 411, 550
SpeI	ACTAGT	1 cut(s)	938
Sse9I	AATT	6 cut(s)	75, 141, 235, 445, 642, 825
SspDI	GGCGCC	1 cut(s)	559
SspI	AATATT	1 cut(s)	894
SspMI	CTAG	1 cut(s)	939
StyD4I	CCNGG	2 cut(s)	426, 931
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	4 cut(s)	192, 475, 580, 867
TaqII	GACCGA	1 cut(s)	302
TasI	AATT	6 cut(s)	75, 141, 235, 445, 642, 825
TatI	WGTACW	1 cut(s)	913
TfiI	GAWTC	3 cut(s)	121, 417, 965
Tru1I	TTAA	5 cut(s)	477, 515, 587, 723, 1026
Tru9I	TTAA	5 cut(s)	477, 515, 587, 723, 1026
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	6 cut(s)	8, 226, 673, 704, 713, 716
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	3 cut(s)	238, 653, 978
VpaK11BI	GGWCC	2 cut(s)	68, 430
XagI	CCTNNNNNAGG	1 cut(s)	755
XapI	RAATTY	2 cut(s)	235, 445
XceI	RCATGY	3 cut(s)	355, 691, 994
XmnI	GAANNNNTTC	1 cut(s)	660
XspI	CTAG	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.