Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8261987.1

Orthogroup ID

OG0005239

Physical Location & Seq

Genomic Coordinates Forward (+)

158 .. 586

Gene Structure 429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8261987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

atgtcaaatttgcaagcagcatatgcagctgcttttaagaatgtgaggccaagtgctgaagacctgccagaggatttggctttgatagtaacctcatgttggaaagaggatccaaatgatcggcccaactttagccaaattatacagatgcttatgcattatctctctactatttcaccatcagaacccgcaatcccccagcggatattcagatctgataatgctgtactgcctcctgagtctcccggtactagttctttgatggctgcacacaatgaatcgggcgaaacccctaaagcagacatggaagagaagcccaaaggttttttcttctgctttaacatgtgttgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.98

Weight (kDa)

4.74

Isoelectric Point (pI)

72.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005239)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27560 AT5G40540 AT5G40540 AT5G40540
fragaria_vesca	FvH4_6g51650 FvH4_6g51650
malus_domestica	MD09G1024000.v1.1 MD09G1045400.v1.1 MD17G1023300.v1.1
prunus_persica	Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1 Prupe.3G293100_v2.0.a1
pyrus_communis	pycom111g01980 pycom17g02000
rosa_chinensis	RchiOBHm_Chr2g0173171
rosa_laevigata	RLG00000022168
rosa_multiflora	Rmu_co8261987.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079140
rosa_rugosa	Rorug02G0566000 Rorug02G0566000
rosa_samantha	Rh2AG646300 Rh2BG657000 Rh2CG622100 Rh2DG670400 Rh5BG464800 Rh5CG486800 Rh6BG252800
rosa_wichuraiana	Rw2G053080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	2 cut(s)	189, 202
AclWI	GGATC	2 cut(s)	104, 117
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	228, 250
AfiI	CCNNNNNNNGG	2 cut(s)	70, 99
AflIII	ACRYGT	1 cut(s)	342
AhlI	ACTAGT	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AloI	GAACNNNNNNTCC	2 cut(s)	177, 209
AluBI	AGCT	1 cut(s)	29
AluI	AGCT	1 cut(s)	29
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	2 cut(s)	104, 117
AoxI	GGCC	2 cut(s)	47, 122
ApeKI	GCWGC	4 cut(s)	17, 26, 29, 266
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	123
AsuC2I	CCSGG	1 cut(s)	246
AsuHPI	GGTGA	1 cut(s)	168
BamHI	GGATCC	1 cut(s)	109
BbsI	GAAGAC	1 cut(s)	66
BbvI	GCAGC	4 cut(s)	16, 29, 38, 253
BccI	CCATC	2 cut(s)	187, 256
BcnI	CCSGG	1 cut(s)	246
BcoDI	GTCTC	1 cut(s)	246
BcuI	ACTAGT	1 cut(s)	251
BfaI	CTAG	1 cut(s)	252
BfuAI	ACCTGC	1 cut(s)	72
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	4 cut(s)	18, 27, 30, 267
BlsI	GCNGC	4 cut(s)	19, 28, 31, 268
Bme1390I	CCNGG	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	123
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	1 cut(s)	246
BmsI	GCATC	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	66
BpuMI	CCSGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 99
BseLI	CCNNNNNNNGG	2 cut(s)	70, 99
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	4 cut(s)	16, 29, 38, 253
BseYI	CCCAGC	1 cut(s)	198
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	2 cut(s)	49, 124
BsiSI	CCGG	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	70, 99
BsmAI	GTCTC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	49, 124
Bsp143I	GATC	3 cut(s)	109, 118, 212
BspACI	CCGC	2 cut(s)	189, 202
BspANI	GGCC	2 cut(s)	49, 124
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	104, 117
BssMI	GATC	3 cut(s)	109, 118, 212
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	237
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	112, 121, 215
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	3 cut(s)	109, 118, 212
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 26
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	1 cut(s)	244
BstV1I	GCAGC	4 cut(s)	16, 29, 38, 253
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	2 cut(s)	109, 212
BstYI	RGATCY	2 cut(s)	109, 212
BsuRI	GGCC	2 cut(s)	49, 124
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	123
Csp6I	GTAC	2 cut(s)	227, 249
CviAII	CATG	3 cut(s)	96, 304, 343
CviJI	RGCY	7 cut(s)	29, 49, 80, 124, 135, 266, 316
CviKI_1	RGCY	7 cut(s)	29, 49, 80, 124, 135, 266, 316
CviQI	GTAC	2 cut(s)	227, 249
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	3 cut(s)	111, 120, 214
DpnII	GATC	3 cut(s)	109, 118, 212
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
Eco57I	CTGAAG	1 cut(s)	78
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	159
FaeI	CATG	3 cut(s)	99, 307, 346
FaiI	YATR	7 cut(s)	22, 24, 97, 143, 155, 305, 344
FatI	CATG	3 cut(s)	95, 303, 342
FauI	CCCGC	1 cut(s)	196
FauNDI	CATATG	1 cut(s)	22
Fnu4HI	GCNGC	4 cut(s)	18, 27, 30, 267
Fsp4HI	GCNGC	4 cut(s)	18, 27, 30, 267
FspBI	CTAG	1 cut(s)	252
GluI	GCNGC	4 cut(s)	18, 27, 30, 267
GsaI	CCCAGC	1 cut(s)	202
HaeIII	GGCC	2 cut(s)	49, 124
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	99, 307, 346
HinfI	GANTC	2 cut(s)	239, 278
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	168
Hpy188I	TCNGA	3 cut(s)	184, 212, 217
Hpy188III	TCNNGA	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	13, 26, 157, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 26
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	99, 307, 346
Kzo9I	GATC	3 cut(s)	109, 118, 212
LpnPI	CCDG	5 cut(s)	77, 81, 212, 249, 259
Lsp1109I	GCAGC	4 cut(s)	16, 29, 38, 253
LweI	GCATC	1 cut(s)	138
MaeI	CTAG	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	111, 120, 214
MboI	GATC	3 cut(s)	109, 118, 212
MboII	GAAGA	3 cut(s)	71, 320, 322
MflI	RGATCY	2 cut(s)	109, 212
MluCI	AATT	2 cut(s)	7, 138
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	5 cut(s)	39, 64, 100, 103, 243
Mph1103I	ATGCAT	1 cut(s)	159
MseI	TTAA	2 cut(s)	36, 339
MspA1I	CMGCKG	2 cut(s)	29, 202
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	23, 26
NciI	CCSGG	1 cut(s)	246
NdeI	CATATG	1 cut(s)	22
NdeII	GATC	3 cut(s)	109, 118, 212
NlaIII	CATG	3 cut(s)	99, 307, 346
NlaIV	GGNNCC	1 cut(s)	111
NsiI	ATGCAT	1 cut(s)	159
NspI	RCATGY	1 cut(s)	346
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	4 cut(s)	19, 28, 31, 268
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
PscI	ACATGT	1 cut(s)	342
PspFI	CCCAGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	1 cut(s)	123
PsuI	RGATCY	2 cut(s)	109, 212
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	228, 250
RsaNI	GTAC	2 cut(s)	227, 249
SaqAI	TTAA	2 cut(s)	36, 339
SatI	GCNGC	4 cut(s)	18, 27, 30, 267
Sau3AI	GATC	3 cut(s)	109, 118, 212
Sau96I	GGNCC	1 cut(s)	123
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	246
SetI	ASST	4 cut(s)	31, 66, 95, 325
SfaNI	GCATC	1 cut(s)	138
SpeI	ACTAGT	1 cut(s)	251
Sse9I	AATT	2 cut(s)	7, 138
SsiI	CCGC	2 cut(s)	189, 202
SspMI	CTAG	1 cut(s)	252
StyD4I	CCNGG	1 cut(s)	244
TasI	AATT	2 cut(s)	7, 138
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	2 cut(s)	36, 339
Tru9I	TTAA	2 cut(s)	36, 339
TseI	GCWGC	4 cut(s)	17, 26, 29, 266
TspDTI	ATGAA	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	346
XspI	CTAG	1 cut(s)	252
Zsp2I	ATGCAT	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.