Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Reverse (-)

10984050 .. 10987203

Gene Structure 3154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28960.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGAAGAAGATAACCAAGAAATACAACGTGACAATGTCGGATCTTCATCTTTCTTTAAAACATGTTTCAACGCACTCAATGCTCTTTCAGGAATTGGAATATTATCGGTACCATATTCACTTGCTCGTGGAGGATGGTTGAGTCTTTCACTTTTGTTACTCCTAGCCGTAACCGCCTTCTACACATCCTTACTCATTACAAAATGTATGAATGCGGACCGCAACATCAAAACATATCCCGACATAGGAGAACGCGCATTTGGTAGACCGGGAAGAATCATTGTGTCAGTCTTCATGCACCTAGAGCTCTATCTAGTCACCACGGGTTTCTTGATCCTCGAGGGCGACAATCTTCACAATCTTTTCCCGGGTTTTACCATCGAAATGATCGGATTGAGATTGAATGGCAAACAAGCTTTCATGGCGACCGTCGCCTTTGTCATTATGCCAACTCTATGGTGGGATAATCTCAGCGTCTTGTCGTATGTTTCTATGAGTGGCGTTTTAGCTACGACTGTGACGCTTGGATCAATATCTTGGATTGGCGCATTTGATGGGATTGGGTTTCATCAAAAAGGAAAGTTGATAAATTGGAGTGGGATCCCTACTGCTTTGAGCTTATATGCTTTTTGCTATGGTGCGCATCCAGTTTTGCCCACTTTGTATTCTTCTATGAAAAGCAAACATCAGTTCAACAATGTCCTACTAATATGTTTTATATTATGCACCATAGGATACACATCAATGGCAGTTTTGGGCTACTTAATGTATGGATCACAAACATTATCACAAATAACACTGAATCTTCCAATTCATAAGACGAGTTCGAAGGTGGCAATATACACAACTCTCGTAAACCCGGTAGCCAAATACGCACTGATGATCACACCAACCGTGAACACTATAAAAGATTGGTTTCCTTCACGGTACTCCAAAAAGGCATACTTACATCTCTTGATAAGCACATTTTTCATCATAAGTAGTGTCGTGATCGCCGAGACACTTCCCTTTTTTGGTTATATGATGTCGCTGGTTGGAGCATTATTGAGCGTTACGGTTTCTATACTTCTGCCTTGTTTATGTTACTTGAAGATCTTTGGAAACTACAAGAAAATTGGGTGTGAGACTATAATGTTGTTTGGAATGGTAGTGATGAGTGTTTTTGTTGGGGTAATAGGTACTTACATTGCACTTCGAGATATAATTGGTAGTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

405

Amino Acids

44.64

Weight (kDa)

8.98

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	15 - 397	4.4e-63	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	338
Acc16I	TGCGCA	1 cut(s)	642
Acc65I	GGTACC	1 cut(s)	109
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	1 cut(s)	255
AciI	CCGC	3 cut(s)	174, 215, 220
AclWI	GGATC	6 cut(s)	49, 328, 535, 595, 608, 781
AfaI	GTAC	3 cut(s)	111, 929, 1180
AfiI	CCNNNNNNNGG	2 cut(s)	245, 1013
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	70, 403, 694, 1090
AjuI	GAANNNNNNNTTGG	2 cut(s)	243, 275
AluBI	AGCT	4 cut(s)	307, 416, 509, 618
AluI	AGCT	4 cut(s)	307, 416, 509, 618
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	2 cut(s)	992, 1118
AlwI	GGATC	6 cut(s)	49, 328, 535, 595, 608, 781
Ama87I	CYCGRG	2 cut(s)	338, 367
Asp718I	GGTACC	1 cut(s)	109
AspLEI	GCGC	3 cut(s)	257, 548, 643
AspS9I	GGNCC	1 cut(s)	217
AsuC2I	CCSGG	4 cut(s)	270, 368, 369, 860
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	827
AvaI	CYCGRG	2 cut(s)	338, 367
AvaII	GGWCC	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	600
BanI	GGYRCC	1 cut(s)	109
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	283
Bbv12I	GWGCWC	1 cut(s)	309
BccI	CCATC	3 cut(s)	129, 386, 548
BceAI	ACGGC	1 cut(s)	152
BciVI	GTATCC	1 cut(s)	728
BclI	TGATCA	1 cut(s)	882
BcnI	CCSGG	4 cut(s)	270, 368, 369, 860
BcoDI	GTCTC	2 cut(s)	992, 1118
BfaI	CTAG	3 cut(s)	164, 302, 314
BfuI	GTATCC	1 cut(s)	728
BglII	AGATCT	1 cut(s)	1092
Bme1390I	CCNGG	4 cut(s)	270, 368, 369, 860
Bme18I	GGWCC	1 cut(s)	217
BmeT110I	CYCGRG	2 cut(s)	338, 367
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	2 cut(s)	111, 602
BmrFI	CCNGG	4 cut(s)	270, 368, 369, 860
BmsI	GCATC	1 cut(s)	652
BpiI	GAAGAC	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	827
BpuMI	CCSGG	4 cut(s)	270, 368, 369, 860
BsaBI	GATNNNNATC	3 cut(s)	46, 532, 739
BsaJI	CCNNGG	2 cut(s)	321, 367
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 1013
Bse1I	ACTGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	1185
Bse8I	GATNNNNATC	3 cut(s)	46, 532, 739
BseDI	CCNNGG	2 cut(s)	321, 367
BseGI	GGATG	3 cut(s)	140, 185, 643
BseJI	GATNNNNATC	3 cut(s)	46, 532, 739
BseLI	CCNNNNNNNGG	2 cut(s)	245, 1013
BseMI	GCAATG	1 cut(s)	1185
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	255
Bsh1285I	CGRYCG	1 cut(s)	429
BshNI	GGYRCC	1 cut(s)	109
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	2 cut(s)	338, 367
BsiSI	CCGG	3 cut(s)	269, 368, 860
BslI	CCNNNNNNNGG	2 cut(s)	245, 1013
BsmAI	GTCTC	2 cut(s)	992, 1118
BsmI	GAATGC	1 cut(s)	217
BsoBI	CYCGRG	2 cut(s)	338, 367
Bsp119I	TTCGAA	1 cut(s)	827
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
BspACI	CCGC	3 cut(s)	174, 215, 220
BspCNI	CTCAG	1 cut(s)	483
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	111, 602
BspPI	GGATC	6 cut(s)	49, 328, 535, 595, 608, 781
BspT104I	TTCGAA	1 cut(s)	827
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	1 cut(s)	1185
BsrI	ACTGG	1 cut(s)	647
BssECI	CCNNGG	2 cut(s)	321, 367
BssMI	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
BssSI	CACGAG	1 cut(s)	126
Bst2BI	CACGAG	1 cut(s)	126
Bst4CI	ACNGT	5 cut(s)	430, 517, 895, 927, 1057
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	827
BstDEI	CTNAG	1 cut(s)	470
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	140, 185, 643
BstFNI	CGCG	1 cut(s)	255
BstHHI	GCGC	3 cut(s)	257, 548, 643
BstKTI	GATC	9 cut(s)	44, 336, 390, 530, 603, 776, 885, 993, 1095
BstMAI	GTCTC	2 cut(s)	992, 1118
BstMBI	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	6 cut(s)	80, 173, 304, 422, 431, 872
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	4 cut(s)	268, 366, 367, 858
BstUI	CGCG	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	283
BstX2I	RGATCY	3 cut(s)	41, 600, 1092
BstXI	CCANNNNNNTGG	1 cut(s)	456
BstYI	RGATCY	3 cut(s)	41, 600, 1092
BsuI	GTATCC	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	140, 185, 643
BtsIMutI	CAGTG	2 cut(s)	797, 875
CfoI	GCGC	3 cut(s)	257, 548, 643
Cfr13I	GGNCC	1 cut(s)	217
Cfr9I	CCCGGG	1 cut(s)	367
CpoI	CGGWCCG	1 cut(s)	217
CseI	GACGC	2 cut(s)	463, 529
Csp6I	GTAC	3 cut(s)	110, 928, 1179
CspI	CGGWCCG	1 cut(s)	217
CviAII	CATG	3 cut(s)	63, 295, 421
CviJI	RGCY	7 cut(s)	167, 307, 416, 509, 618, 759, 866
CviKI_1	RGCY	7 cut(s)	167, 307, 416, 509, 618, 759, 866
CviQI	GTAC	3 cut(s)	110, 928, 1179
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	9 cut(s)	43, 335, 389, 529, 602, 775, 884, 992, 1094
DpnII	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
DraI	TTTAAA	1 cut(s)	58
Ecl136II	GAGCTC	1 cut(s)	307
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	307
Eco88I	CYCGRG	2 cut(s)	338, 367
EcoICRI	GAGCTC	1 cut(s)	307
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	3 cut(s)	66, 298, 424
FalI	AAGNNNNNCTT	2 cut(s)	929, 961
FatI	CATG	3 cut(s)	62, 294, 420
FbaI	TGATCA	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	265
FokI	GGATG	3 cut(s)	147, 172, 630
FriOI	GRGCYC	1 cut(s)	309
FspAI	RTGCGCAY	1 cut(s)	642
FspBI	CTAG	3 cut(s)	164, 302, 314
FspI	TGCGCA	1 cut(s)	642
GlaI	GCGC	3 cut(s)	256, 547, 642
HapII	CCGG	3 cut(s)	269, 368, 860
HgaI	GACGC	2 cut(s)	463, 529
HhaI	GCGC	3 cut(s)	257, 548, 643
Hin1II	CATG	3 cut(s)	66, 298, 424
Hin6I	GCGC	3 cut(s)	255, 546, 641
HinP1I	GCGC	3 cut(s)	255, 546, 641
HindIII	AAGCTT	1 cut(s)	414
HinfI	GANTC	3 cut(s)	142, 276, 802
HpaII	CCGG	3 cut(s)	269, 368, 860
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	3 cut(s)	266, 856, 898
Hpy188I	TCNGA	2 cut(s)	41, 392
Hpy188III	TCNNGA	6 cut(s)	90, 239, 331, 955, 988, 1196
Hpy8I	GTNNAC	3 cut(s)	266, 856, 898
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	3 cut(s)	187, 823, 930
HpyCH4III	ACNGT	5 cut(s)	430, 517, 895, 927, 1057
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	298, 726, 1190
HpyF10VI	GCNNNNNNNGC	6 cut(s)	80, 173, 304, 422, 431, 872
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	66, 298, 424
HspAI	GCGC	3 cut(s)	255, 546, 641
KpnI	GGTACC	1 cut(s)	113
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
LmnI	GCTCC	1 cut(s)	1037
LpnPI	CCDG	6 cut(s)	75, 282, 381, 660, 873, 1016
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	3 cut(s)	164, 302, 314
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	7 cut(s)	29, 156, 169, 316, 517, 1051, 1082
MalI	GATC	9 cut(s)	43, 335, 389, 529, 602, 775, 884, 992, 1094
MboI	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
MboII	GAAGA	9 cut(s)	17, 20, 36, 283, 285, 344, 660, 797, 1102
MflI	RGATCY	3 cut(s)	41, 600, 1092
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	5 cut(s)	93, 589, 810, 1113, 1203
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	19, 1015
MnlI	CCTC	3 cut(s)	125, 334, 347
MseI	TTAA	2 cut(s)	57, 764
MslI	CAYNNNNRTG	2 cut(s)	383, 743
MspI	CCGG	3 cut(s)	269, 368, 860
MspR9I	CCNGG	4 cut(s)	270, 368, 369, 860
Mva1269I	GAATGC	1 cut(s)	217
MvnI	CGCG	1 cut(s)	255
MwoI	GCNNNNNNNGC	6 cut(s)	80, 173, 304, 422, 431, 872
NciI	CCSGG	4 cut(s)	270, 368, 369, 860
NdeII	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
NlaIII	CATG	3 cut(s)	66, 298, 424
NlaIV	GGNNCC	2 cut(s)	111, 602
NmeAIII	GCCGAG	1 cut(s)	1021
NmuCI	GTSAC	3 cut(s)	29, 316, 517
NsbI	TGCGCA	1 cut(s)	642
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	1 cut(s)	827
PaeR7I	CTCGAG	1 cut(s)	338
PciI	ACATGT	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	1 cut(s)	993
PctI	GAATGC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	276, 802
PflFI	GACNNNGTC	1 cut(s)	35
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PscI	ACATGT	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	309
PspN4I	GGNNCC	2 cut(s)	111, 602
PspPI	GGNCC	1 cut(s)	217
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	3 cut(s)	41, 600, 1092
PsyI	GACNNNGTC	1 cut(s)	35
RsaI	GTAC	3 cut(s)	111, 929, 1180
RsaNI	GTAC	3 cut(s)	110, 928, 1179
RseI	CAYNNNNRTG	2 cut(s)	383, 743
Rsr2I	CGGWCCG	1 cut(s)	217
RsrII	CGGWCCG	1 cut(s)	217
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	57, 764
Sau3AI	GATC	9 cut(s)	41, 333, 387, 527, 600, 773, 882, 990, 1092
Sau96I	GGNCC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	4 cut(s)	270, 368, 369, 860
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	8 cut(s)	31, 303, 309, 418, 511, 620, 834, 1180
SfaNI	GCATC	1 cut(s)	652
Sfr274I	CTCGAG	1 cut(s)	338
SfuI	TTCGAA	1 cut(s)	827
SinI	GGWCC	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	338
SmaI	CCCGGG	1 cut(s)	369
SmiMI	CAYNNNNRTG	2 cut(s)	383, 743
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	5 cut(s)	93, 589, 810, 1113, 1203
SsiI	CCGC	3 cut(s)	174, 215, 220
SspI	AATATT	1 cut(s)	102
SspMI	CTAG	3 cut(s)	164, 302, 314
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	4 cut(s)	268, 366, 367, 858
TaaI	ACNGT	5 cut(s)	430, 517, 895, 927, 1057
TaiI	ACGT	1 cut(s)	31
TaqI	TCGA	4 cut(s)	339, 381, 827, 1195
TasI	AATT	5 cut(s)	93, 589, 810, 1113, 1203
TfiI	GAWTC	2 cut(s)	276, 802
Tru1I	TTAA	2 cut(s)	57, 764
Tru9I	TTAA	2 cut(s)	57, 764
TscAI	CASTG	2 cut(s)	804, 882
TseFI	GTSAC	3 cut(s)	29, 316, 517
Tsp45I	GTSAC	3 cut(s)	29, 316, 517
TspDTI	ATGAA	8 cut(s)	36, 224, 283, 409, 557, 689, 803, 961
TspMI	CCCGGG	1 cut(s)	367
TspRI	CASTG	2 cut(s)	804, 882
Tth111I	GACNNNGTC	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	217
XceI	RCATGY	1 cut(s)	66
XcmI	CCANNNNNNNNNTGG	1 cut(s)	456
XhoI	CTCGAG	1 cut(s)	338
XmaI	CCCGGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	3 cut(s)	164, 302, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.