Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

16652680 .. 16654556

Gene Structure 1877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G152900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGATGCTGCTGATGCGCTTGATCGATCATCGTTGACCTTTCCTCTAGTGTGTGATGAAAGGCAACAATATGAGGAAGTAGAGGCAATTGACCGTGATCACCAAACTAAAACAACCTCTGTTTTGAAAACTTGTTTCAATGGACTCAATGCCCTATCTGGAGTTGGGATGCTATCAGTTCCTTATGCACTCTCATCAGGAGGGTGGCTAAGCTTGATACTTCTTTTTGTAATTGCTGTTGCTGCCTTTTACTCAGGCTTGTTAATTCAAAGATGCATGGATGAAGGTTCTACTATAAGAACTTATCCTGACATTGGTGAACATGCATTTGGGAAAAAGGGAAAAATAGTTCTGTCAATTTTCATGAACACAGAACTCTACTTAGTTGCAACATCTTTCCTAATTCTGGAAGGAGATAACCTACACGACTTATTTCCAAAAATGAAATTGGAAGTGGCTGGATTAACAATTAGTGGGAAGAAGTGCTTTACAATACTTGGTGGACTTATTGTTCTGCCAACTGTGTGGTTTGATAGCCTCAGCCTTCTTTCTTATGTCTCTGCAAGTGGGGTTTTTTCATCTGTTATCATTATTGGGTCAATTTTGTGGACTGCTGTTTTTGATGGAATTGGATTTCACCAAGAGGGATCGGTACCGCTTAATTGGAGTGGAATCCCTACTGCTGTTAGCTTATATGCCTTCTGCTATTGTGCGCATCCAGTGTTCCCTACGCTCTACAAATCAATGAAAAACAAACGTCAGTTCCCGAATGTCCTCCTCGTGTGCTTTATTTTATGCACCCTTGGTTATGCATCAATGGCAGTTTTAGGGTACTTAATGTTCGGGTCAACAGTAGAATCACAGATAACTTTAAACCTCCCAACCAAAGAACTTAGCTCAAAAATCGCAATATGGACCACCCTTATCAATCCATTATCCAAATATGCTTTAATGGTTACACCAATCCTAAATACTGCCCAAAATTGGTTTCCAAGTTGCTGCAAAAAAAGTCGAAGCTTCCGCCTATTTCTCAGCACTTCCTTGGTAATCAGCAGTGTCATAGTAGCTTTGGCTATACCTTTTTTTGCTTATCTCATGTCTCTGGTTGGAGCATTTTTGAGTGTCACAGCTTCACTTATTATACCATGCCTTTGCTACCTTAAAATTTCAGGTACTTATCGAAATCTCGGATGCGAAATGTTGATTATAGGGTGTATAATTTTGATGGGAGTTGTAGTTGCCATAGTTGGTACTTACACATCTCTACAACAAATAATAGAGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

430

Amino Acids

46.86

Weight (kDa)

7.45

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	714
Acc65I	GGTACC	1 cut(s)	652
AccB1I	GGYRCC	1 cut(s)	652
AciI	CCGC	2 cut(s)	656, 1021
AclWI	GGATC	1 cut(s)	655
AcsI	RAATTY	1 cut(s)	1164
AfaI	GTAC	4 cut(s)	654, 833, 1174, 1252
AfiI	CCNNNNNNNGG	3 cut(s)	314, 406, 984
AgsI	TTSAA	3 cut(s)	127, 139, 269
AjuI	GAANNNNNNNTTGG	4 cut(s)	312, 344, 972, 1004
AloI	GAACNNNNNNTCC	4 cut(s)	333, 365, 495, 527
AluBI	AGCT	6 cut(s)	213, 690, 897, 1017, 1067, 1130
AluI	AGCT	6 cut(s)	213, 690, 897, 1017, 1067, 1130
Alw26I	GTCTC	2 cut(s)	562, 1104
AlwI	GGATC	1 cut(s)	655
ApeKI	GCWGC	3 cut(s)	8, 242, 999
ApoI	RAATTY	1 cut(s)	1164
Asp718I	GGTACC	1 cut(s)	652
AspLEI	GCGC	2 cut(s)	19, 715
AspS9I	GGNCC	1 cut(s)	915
AsuHPI	GGTGA	3 cut(s)	92, 329, 629
AvaII	GGWCC	1 cut(s)	915
BanI	GGYRCC	1 cut(s)	652
BauI	CACGAG	1 cut(s)	779
BbvCI	CCTCAGC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	229, 986
BccI	CCATC	2 cut(s)	617, 1219
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	562, 1104
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	3 cut(s)	9, 243, 1000
BlpI	GCTNAGC	1 cut(s)	209
BlsI	GCNGC	3 cut(s)	10, 244, 1001
Bme18I	GGWCC	1 cut(s)	915
BmgT120I	GGNCC	1 cut(s)	915
BmiI	GGNNCC	1 cut(s)	654
BmsI	GCATC	6 cut(s)	4, 159, 263, 724, 821, 1181
BpmI	CTGGAG	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	539
Bpu1102I	GCTNAGC	1 cut(s)	209
Bsa29I	ATCGAT	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	802, 1041
BsaXI	ACNNNNNCTCC	2 cut(s)	1221, 1251
Bsc4I	CCNNNNNNNGG	3 cut(s)	314, 406, 984
Bse1I	ACTGG	1 cut(s)	719
BseCI	ATCGAT	1 cut(s)	25
BseDI	CCNNGG	2 cut(s)	802, 1041
BseGI	GGATG	5 cut(s)	10, 174, 286, 715, 1196
BseLI	CCNNNNNNNGG	3 cut(s)	314, 406, 984
BseMII	CTCAG	3 cut(s)	267, 553, 1045
BseNI	ACTGG	1 cut(s)	719
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	2 cut(s)	229, 986
BshNI	GGYRCC	1 cut(s)	652
BshVI	ATCGAT	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	314, 406, 984
BsmAI	GTCTC	2 cut(s)	562, 1104
Bsp143I	GATC	4 cut(s)	22, 26, 97, 647
Bsp1720I	GCTNAGC	1 cut(s)	209
BspACI	CCGC	2 cut(s)	656, 1021
BspCNI	CTCAG	3 cut(s)	266, 552, 1044
BspDI	ATCGAT	1 cut(s)	25
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	654
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	652
BsrI	ACTGG	1 cut(s)	719
BssECI	CCNNGG	2 cut(s)	802, 1041
BssMI	GATC	4 cut(s)	22, 26, 97, 647
BssSI	CACGAG	1 cut(s)	779
BssT1I	CCWWGG	2 cut(s)	802, 1041
Bst2BI	CACGAG	1 cut(s)	779
Bst4CI	ACNGT	3 cut(s)	95, 523, 853
BstDEI	CTNAG	6 cut(s)	209, 253, 382, 539, 893, 1031
BstF5I	GGATG	5 cut(s)	10, 174, 286, 715, 1196
BstHHI	GCGC	2 cut(s)	19, 715
BstKTI	GATC	4 cut(s)	25, 29, 100, 650
BstMAI	GTCTC	2 cut(s)	562, 1104
BstMBI	GATC	4 cut(s)	22, 26, 97, 647
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 242, 818
BstNSI	RCATGY	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	229, 986
BstXI	CCANNNNNNTGG	1 cut(s)	525
Bsu15I	ATCGAT	1 cut(s)	25
BsuTUI	ATCGAT	1 cut(s)	25
BtsCI	GGATG	5 cut(s)	10, 174, 286, 715, 1196
BtsI	GCAGTG	1 cut(s)	1060
BtsIMutI	CAGTG	2 cut(s)	726, 1060
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	2 cut(s)	19, 715
Cfr13I	GGNCC	1 cut(s)	915
ClaI	ATCGAT	1 cut(s)	25
Csp6I	GTAC	4 cut(s)	653, 832, 1173, 1251
CviAII	CATG	5 cut(s)	277, 323, 364, 1096, 1146
CviQI	GTAC	4 cut(s)	653, 832, 1173, 1251
DdeI	CTNAG	6 cut(s)	209, 253, 382, 539, 893, 1031
DpnI	GATC	4 cut(s)	24, 28, 99, 649
DpnII	GATC	4 cut(s)	22, 26, 97, 647
DraI	TTTAAA	1 cut(s)	873
EciI	GGCGGA	1 cut(s)	1010
Eco130I	CCWWGG	2 cut(s)	802, 1041
Eco47I	GGWCC	1 cut(s)	915
EcoT14I	CCWWGG	2 cut(s)	802, 1041
EcoT22I	ATGCAT	3 cut(s)	278, 328, 814
ErhI	CCWWGG	2 cut(s)	802, 1041
FaeI	CATG	5 cut(s)	280, 326, 367, 1099, 1149
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FatI	CATG	5 cut(s)	276, 322, 363, 1095, 1145
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	3 cut(s)	9, 243, 1000
FokI	GGATG	5 cut(s)	17, 181, 293, 702, 1203
Fsp4HI	GCNGC	3 cut(s)	9, 243, 1000
FspAI	RTGCGCAY	1 cut(s)	714
FspBI	CTAG	1 cut(s)	47
FspI	TGCGCA	1 cut(s)	714
GlaI	GCGC	2 cut(s)	18, 714
GluI	GCNGC	3 cut(s)	9, 243, 1000
GsuI	CTGGAG	1 cut(s)	180
HhaI	GCGC	2 cut(s)	19, 715
Hin1II	CATG	5 cut(s)	280, 326, 367, 1099, 1149
Hin6I	GCGC	2 cut(s)	17, 713
HinP1I	GCGC	2 cut(s)	17, 713
HincII	GTYRAC	2 cut(s)	36, 849
HindII	GTYRAC	2 cut(s)	36, 849
HindIII	AAGCTT	2 cut(s)	211, 1015
HinfI	GANTC	3 cut(s)	144, 672, 857
HphI	GGTGA	3 cut(s)	92, 329, 629
Hpy166II	GTNNAC	5 cut(s)	36, 320, 503, 609, 849
Hpy188I	TCNGA	1 cut(s)	1190
Hpy188III	TCNNGA	6 cut(s)	159, 198, 308, 364, 407, 766
Hpy8I	GTNNAC	5 cut(s)	36, 320, 503, 609, 849
HpyAV	CCTTC	4 cut(s)	278, 404, 554, 709
HpyCH4III	ACNGT	3 cut(s)	95, 523, 853
HpyCH4IV	ACGT	1 cut(s)	757
HpyCH4V	TGCA	8 cut(s)	188, 276, 326, 389, 563, 798, 812, 1002
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 242, 818
HpyF3I	CTNAG	6 cut(s)	209, 253, 382, 539, 893, 1031
HpySE526I	ACGT	1 cut(s)	757
Hsp92II	CATG	5 cut(s)	280, 326, 367, 1099, 1149
HspAI	GCGC	2 cut(s)	17, 713
KpnI	GGTACC	1 cut(s)	656
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	22, 26, 97, 647
LmnI	GCTCC	1 cut(s)	1109
LpnPI	CCDG	9 cut(s)	144, 183, 240, 321, 392, 444, 732, 1088, 1155
Lsp1109I	GCAGC	2 cut(s)	229, 986
LweI	GCATC	6 cut(s)	4, 159, 263, 724, 821, 1181
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	757
MaeIII	GTNAC	2 cut(s)	955, 1123
MalI	GATC	4 cut(s)	24, 28, 99, 649
MboI	GATC	4 cut(s)	22, 26, 97, 647
MboII	GAAGA	1 cut(s)	490
MfeI	CAATTG	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	138
MmeI	TCCRAC	1 cut(s)	1087
Mph1103I	ATGCAT	3 cut(s)	278, 328, 814
MseI	TTAA	7 cut(s)	263, 464, 660, 836, 872, 950, 1161
MunI	CAATTG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	14, 242, 818
NdeII	GATC	4 cut(s)	22, 26, 97, 647
NlaIII	CATG	5 cut(s)	280, 326, 367, 1099, 1149
NlaIV	GGNNCC	1 cut(s)	654
NmuCI	GTSAC	1 cut(s)	1123
NsbI	TGCGCA	1 cut(s)	714
NsiI	ATGCAT	3 cut(s)	278, 328, 814
NspI	RCATGY	1 cut(s)	326
PagI	TCATGA	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	672, 857
PkrI	GCNGC	3 cut(s)	10, 244, 1001
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	654
PspPI	GGNCC	1 cut(s)	915
PsrI	GAACNNNNNNTAC	2 cut(s)	824, 856
RsaI	GTAC	4 cut(s)	654, 833, 1174, 1252
RsaNI	GTAC	4 cut(s)	653, 832, 1173, 1251
SaqAI	TTAA	7 cut(s)	263, 464, 660, 836, 872, 950, 1161
SatI	GCNGC	3 cut(s)	9, 243, 1000
Sau3AI	GATC	4 cut(s)	22, 26, 97, 647
Sau96I	GGNCC	1 cut(s)	915
SchI	GAGTC	1 cut(s)	138
SfaNI	GCATC	6 cut(s)	4, 159, 263, 724, 821, 1181
SinI	GGWCC	1 cut(s)	915
SsiI	CCGC	2 cut(s)	656, 1021
SspMI	CTAG	1 cut(s)	47
StyI	CCWWGG	2 cut(s)	802, 1041
TaaI	ACNGT	3 cut(s)	95, 523, 853
TaiI	ACGT	1 cut(s)	760
TaqI	TCGA	3 cut(s)	25, 1012, 1180
TfiI	GAWTC	2 cut(s)	672, 857
Tru1I	TTAA	7 cut(s)	263, 464, 660, 836, 872, 950, 1161
Tru9I	TTAA	7 cut(s)	263, 464, 660, 836, 872, 950, 1161
TscAI	CASTG	2 cut(s)	726, 1060
TseFI	GTSAC	1 cut(s)	1123
TseI	GCWGC	3 cut(s)	8, 242, 999
Tsp45I	GTSAC	1 cut(s)	1123
TspDTI	ATGAA	7 cut(s)	72, 297, 352, 380, 458, 567, 761
TspRI	CASTG	2 cut(s)	726, 1060
VpaK11BI	GGWCC	1 cut(s)	915
XapI	RAATTY	1 cut(s)	1164
XceI	RCATGY	1 cut(s)	326
XspI	CTAG	1 cut(s)	47
Zsp2I	ATGCAT	3 cut(s)	278, 328, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.