Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Reverse (-)

24982214 .. 24985517

Gene Structure 3304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G267100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGATGAGTCTCCAGATGAATCATCCTTGACCTTGCCTCTTATCCTTGATGAGGAACAACATGAGCCTGCAAGCAATAAGGTAGAAGAAGTAGAGTCTAACTTTCATCATGAATCCACAGCTACAACCTCTTTTCTCAAAACCTTTTTCAATGGACTCAATGCGCTGTCAGGAGTAGGGATACTCTCAGTTCCTTATGCACTATCATCAGGAGGATGGTTAAGCTTGATACTTCTTTTCGCAATCGCCGCTTCATGCTTTTACACAGGCTTGCTAATTAAAAGATGCATGGATATGGATTCTGATATCAGAACTTATCCGGATATAGGCGAACGTGCATTTGGGAACAAGGGAAGGATATGGTTGTCAGTTGTCATGAACATAGAACTCTACTTAGTTGCAACAGGTTTCCTGATTTTGGAAGGGGACAACTTGCATAACATATTTCCAGGTGTGGAATTGGAAGTGGCTGGTTTAAGAATTGGTGGAAAACATTGCTTTATAGTTGTTGTTGCCCTTATTATTCTCCCAACAGTTTGGTTAGATAACTTGAGCCTTCTTTCTTATGTCTCTGCAAGTGGGGTTTTAGCTTCTGCAATCATCCTTGGTTCAATTCTGTGGATTGGTTCTTTCGATGGAATTGGATTTCATCAAGCGGGGTCACCAGTTAACTGGAATGGAATCCCTACAGCTGTTAGCTTATATGCCTTTTGTTATTGTGCTCATCCAGTGTTCCCTACCTTGTACACTTCAATGAAAAACAAGCATCAGTTCTCCAATGTCCTCCTCCTCTGCTTTATCCTATGCACCGTTTCTTATGCATCAATGGCAGTTTTTGGCTACCTAATGTTTGGTTCAACGGTTCAATCACAAATAACTTTAAACCTCCCAACTCGAAACATTAGCTCAAAAGTCGCCATATTCACGACCCTGGTGAATCCAATATCCAAATATGCTTTGATGGTTACTCCAATCGTGAACGCTGCCAAGAAGAAGTTTCCAAGTCACTACAGTAAAAGGTTCATTGGCCTATTAGCCAGCACTACCTTGGTAATCAGCACTGTAATAGTAGCTTTGGCTATACCCTTTTTCGCGTATCTCATGTCACTTGTTGGAGCATTTTTGAGTGTGACAGGTTCAATTGTATTCCCATGCTTTTGCTACCTGAAACTTTCAGGTAATTATCGAAGATTCGGATGTGAGGTGTTGATTATCGGGTGCATATTACTACTCAGTGCTGCAATTATTGTATTTGGCACTTACACTGCTCTAGTAGAAATAATAGGGAGCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

432

Amino Acids

46.81

Weight (kDa)

6.3

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1094
AccIII	TCCGGA	1 cut(s)	319
AciI	CCGC	2 cut(s)	249, 656
AfaI	GTAC	1 cut(s)	746
AfiI	CCNNNNNNNGG	3 cut(s)	52, 326, 418
AgsI	TTSAA	6 cut(s)	151, 612, 753, 858, 866, 1140
AjnI	CCWGG	2 cut(s)	448, 930
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	8 cut(s)	122, 225, 590, 692, 699, 906, 1073, 1290
AluI	AGCT	8 cut(s)	122, 225, 590, 692, 699, 906, 1073, 1290
Alw21I	GWGCWC	1 cut(s)	724
Alw26I	GTCTC	2 cut(s)	15, 574
Aor13HI	TCCGGA	1 cut(s)	319
AoxI	GGCC	1 cut(s)	1027
ApeKI	GCWGC	2 cut(s)	983, 1238
AspLEI	GCGC	1 cut(s)	166
AsuHPI	GGTGA	2 cut(s)	654, 946
Bbv12I	GWGCWC	1 cut(s)	724
BbvI	GCAGC	2 cut(s)	970, 1225
BccI	CCATC	3 cut(s)	210, 629, 955
BciT130I	CCWGG	2 cut(s)	450, 932
BciVI	GTATCC	1 cut(s)	174
BcoDI	GTCTC	2 cut(s)	15, 574
BfaI	CTAG	1 cut(s)	1271
BfmI	CTRYAG	2 cut(s)	687, 1009
BfuI	GTATCC	1 cut(s)	174
BisI	GCNGC	3 cut(s)	249, 984, 1239
BlsI	GCNGC	3 cut(s)	250, 985, 1240
Bme1390I	CCNGG	2 cut(s)	450, 932
BmrFI	CCNGG	2 cut(s)	450, 932
BmsI	GCATC	3 cut(s)	275, 775, 830
BpuEI	CTTGAG	1 cut(s)	571
BsaJI	CCNNGG	3 cut(s)	604, 930, 1047
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 326, 418
Bse1I	ACTGG	3 cut(s)	665, 677, 728
Bse3DI	GCAATG	1 cut(s)	493
BseAI	TCCGGA	1 cut(s)	319
BseBI	CCWGG	2 cut(s)	450, 932
BseDI	CCNNGG	3 cut(s)	604, 930, 1047
BseGI	GGATG	6 cut(s)	10, 23, 221, 600, 724, 1202
BseLI	CCNNNNNNNGG	3 cut(s)	52, 326, 418
BseMI	GCAATG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	201, 1246
BseNI	ACTGG	3 cut(s)	665, 677, 728
BseRI	GAGGAG	2 cut(s)	776, 779
BseXI	GCAGC	2 cut(s)	970, 1225
Bsh1236I	CGCG	1 cut(s)	1094
BshFI	GGCC	1 cut(s)	1029
BsiHKAI	GWGCWC	1 cut(s)	724
BsiSI	CCGG	1 cut(s)	320
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	3 cut(s)	52, 326, 418
BsmAI	GTCTC	2 cut(s)	15, 574
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	1 cut(s)	1029
Bsp1286I	GDGCHC	1 cut(s)	724
Bsp13I	TCCGGA	1 cut(s)	319
Bsp1407I	TGTACA	1 cut(s)	744
BspACI	CCGC	2 cut(s)	249, 656
BspANI	GGCC	1 cut(s)	1029
BspCNI	CTCAG	2 cut(s)	200, 1245
BspEI	TCCGGA	1 cut(s)	319
BspFNI	CGCG	1 cut(s)	1094
BspHI	TCATGA	2 cut(s)	109, 375
BsrDI	GCAATG	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	744
BsrI	ACTGG	3 cut(s)	665, 677, 728
BssECI	CCNNGG	3 cut(s)	604, 930, 1047
BssT1I	CCWWGG	2 cut(s)	604, 1047
Bst2UI	CCWGG	2 cut(s)	450, 932
Bst4CI	ACNGT	5 cut(s)	535, 811, 862, 1013, 1063
BstAUI	TGTACA	1 cut(s)	744
BstC8I	GCNNGC	4 cut(s)	69, 73, 272, 1039
BstDEI	CTNAG	3 cut(s)	187, 394, 1232
BstEII	GGTNACC	1 cut(s)	660
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	6 cut(s)	10, 23, 221, 600, 724, 1202
BstFNI	CGCG	1 cut(s)	1094
BstHHI	GCGC	1 cut(s)	166
BstMAI	GTCTC	2 cut(s)	15, 574
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 827
BstNI	CCWGG	2 cut(s)	450, 932
BstPI	GGTNACC	1 cut(s)	660
BstSCI	CCNGG	2 cut(s)	448, 930
BstSFI	CTRYAG	2 cut(s)	687, 1009
BstUI	CGCG	1 cut(s)	1094
BstV1I	GCAGC	2 cut(s)	970, 1225
BstXI	CCANNNNNNTGG	2 cut(s)	537, 672
BsuI	GTATCC	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	1029
BtsCI	GGATG	6 cut(s)	10, 23, 221, 600, 724, 1202
BtsI	GCAGTG	1 cut(s)	1263
BtsIMutI	CAGTG	4 cut(s)	735, 1059, 1240, 1263
Cac8I	GCNNGC	4 cut(s)	69, 73, 272, 1039
CciI	TCATGA	2 cut(s)	109, 375
CfoI	GCGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	745
CviAII	CATG	7 cut(s)	62, 110, 255, 289, 376, 1102, 1152
CviQI	GTAC	1 cut(s)	745
DdeI	CTNAG	3 cut(s)	187, 394, 1232
DraI	TTTAAA	1 cut(s)	882
Eco130I	CCWWGG	2 cut(s)	604, 1047
Eco32I	GATATC	1 cut(s)	307
Eco91I	GGTNACC	1 cut(s)	660
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoO65I	GGTNACC	1 cut(s)	660
EcoRII	CCWGG	2 cut(s)	448, 930
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	2 cut(s)	604, 1047
EcoT22I	ATGCAT	2 cut(s)	290, 823
ErhI	CCWWGG	2 cut(s)	604, 1047
FaeI	CATG	7 cut(s)	65, 113, 258, 292, 379, 1105, 1155
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	7 cut(s)	61, 109, 254, 288, 375, 1101, 1151
FauI	CCCGC	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	249, 984, 1239
FokI	GGATG	6 cut(s)	10, 17, 228, 587, 711, 1209
Fsp4HI	GCNGC	3 cut(s)	249, 984, 1239
FspBI	CTAG	1 cut(s)	1271
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	3 cut(s)	249, 984, 1239
HaeIII	GGCC	1 cut(s)	1029
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	7 cut(s)	65, 113, 258, 292, 379, 1105, 1155
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	223
HinfI	GANTC	9 cut(s)	8, 20, 95, 113, 156, 299, 681, 937, 1191
HpaI	GTTAAC	1 cut(s)	670
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	654, 946
Hpy166II	GTNNAC	3 cut(s)	670, 747, 979
Hpy188I	TCNGA	3 cut(s)	304, 311, 1196
Hpy188III	TCNNGA	9 cut(s)	14, 110, 171, 210, 320, 376, 412, 925, 976
Hpy8I	GTNNAC	3 cut(s)	670, 747, 979
HpyAV	CCTTC	3 cut(s)	348, 416, 566
HpyCH4III	ACNGT	5 cut(s)	535, 811, 862, 1013, 1063
HpyCH4IV	ACGT	1 cut(s)	334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 827
HpyF3I	CTNAG	3 cut(s)	187, 394, 1232
HpySE526I	ACGT	1 cut(s)	334
Hsp92II	CATG	7 cut(s)	65, 113, 258, 292, 379, 1105, 1155
HspAI	GCGC	1 cut(s)	164
Kpn2I	TCCGGA	1 cut(s)	319
KspAI	GTTAAC	1 cut(s)	670
LmnI	GCTCC	2 cut(s)	1115, 1287
Lsp1109I	GCAGC	2 cut(s)	970, 1225
LweI	GCATC	3 cut(s)	275, 775, 830
MaeI	CTAG	1 cut(s)	1271
MaeII	ACGT	1 cut(s)	334
MaeIII	GTNAC	5 cut(s)	660, 964, 1004, 1104, 1129
MboII	GAAGA	3 cut(s)	98, 1003, 1200
MfeI	CAATTG	1 cut(s)	1140
MhlI	GDGCHC	1 cut(s)	724
MluCI	AATT	8 cut(s)	276, 458, 480, 612, 639, 1140, 1180, 1242
MlyI	GAGTC	3 cut(s)	17, 104, 150
MmeI	TCCRAC	1 cut(s)	1093
MnlI	CCTC	9 cut(s)	46, 48, 139, 206, 794, 797, 800, 896, 1195
Mph1103I	ATGCAT	2 cut(s)	290, 823
MroI	TCCGGA	1 cut(s)	319
MseI	TTAA	5 cut(s)	221, 279, 476, 669, 881
MslI	CAYNNNNRTG	2 cut(s)	293, 752
MspA1I	CMGCKG	1 cut(s)	692
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	450, 932
MunI	CAATTG	1 cut(s)	1140
MvaI	CCWGG	2 cut(s)	450, 932
MvnI	CGCG	1 cut(s)	1094
MwoI	GCNNNNNNNGC	2 cut(s)	248, 827
NlaIII	CATG	7 cut(s)	65, 113, 258, 292, 379, 1105, 1155
NmuCI	GTSAC	4 cut(s)	660, 1004, 1104, 1129
NsiI	ATGCAT	2 cut(s)	290, 823
PagI	TCATGA	2 cut(s)	109, 375
PfeI	GAWTC	6 cut(s)	20, 113, 299, 681, 937, 1191
PkrI	GCNGC	3 cut(s)	250, 985, 1240
PleI	GAGTC	3 cut(s)	16, 103, 150
PpsI	GAGTC	3 cut(s)	16, 103, 150
Psp6I	CCWGG	2 cut(s)	448, 930
PspEI	GGTNACC	1 cut(s)	660
PspGI	CCWGG	2 cut(s)	448, 930
PvuII	CAGCTG	1 cut(s)	692
RsaI	GTAC	1 cut(s)	746
RsaNI	GTAC	1 cut(s)	745
RseI	CAYNNNNRTG	2 cut(s)	293, 752
SaqAI	TTAA	5 cut(s)	221, 279, 476, 669, 881
SatI	GCNGC	3 cut(s)	249, 984, 1239
SchI	GAGTC	3 cut(s)	17, 104, 150
ScrFI	CCNGG	2 cut(s)	450, 932
SduI	GDGCHC	1 cut(s)	724
SfaNI	GCATC	3 cut(s)	275, 775, 830
SfcI	CTRYAG	2 cut(s)	687, 1009
SmiMI	CAYNNNNRTG	2 cut(s)	293, 752
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	8 cut(s)	276, 458, 480, 612, 639, 1140, 1180, 1242
SsiI	CCGC	2 cut(s)	249, 656
SspMI	CTAG	1 cut(s)	1271
StyD4I	CCNGG	2 cut(s)	448, 930
StyI	CCWWGG	2 cut(s)	604, 1047
TaaI	ACNGT	5 cut(s)	535, 811, 862, 1013, 1063
TaiI	ACGT	1 cut(s)	337
TaqI	TCGA	3 cut(s)	633, 895, 1186
TasI	AATT	8 cut(s)	276, 458, 480, 612, 639, 1140, 1180, 1242
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	251
TfiI	GAWTC	6 cut(s)	20, 113, 299, 681, 937, 1191
Tru1I	TTAA	5 cut(s)	221, 279, 476, 669, 881
Tru9I	TTAA	5 cut(s)	221, 279, 476, 669, 881
TscAI	CASTG	4 cut(s)	735, 1066, 1240, 1270
TseFI	GTSAC	4 cut(s)	660, 1004, 1104, 1129
TseI	GCWGC	2 cut(s)	983, 1238
Tsp45I	GTSAC	4 cut(s)	660, 1004, 1104, 1129
TspDTI	ATGAA	8 cut(s)	33, 95, 126, 243, 392, 638, 770, 1012
TspRI	CASTG	4 cut(s)	735, 1066, 1240, 1270
XagI	CCTNNNNNAGG	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1045
XspI	CTAG	1 cut(s)	1271
Zsp2I	ATGCAT	2 cut(s)	290, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.