Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Reverse (-)

82752600 .. 82754720

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGCTGAACCGCTAGATAAATCGTCACTGACCACTCCTCTTATCGTGGATGAGCGGCAATATGATGAGCCAGGATGCAATACCAAGCTAGTTGAAGAAGAACTAGAGTCCAACAATTCTCATCCTCAAAGTAAAGCCACAACATCTACTCTCAAAACCTGTTTCAATGGACTCAATGCTCTCTCAGGAGTTGGGATCCTATCAGTTCCTTATGCACTGGCAACTGGAGGGTGGTCAAGCTTAGCACTTCTGTTTTTGTTCGCTGCTGCAGCCTTTTACTCAGGCTTGTTAATCAAGAGATGTATGGATATGGATTCTAGCATAAGAACTTATCCTGAAATAGGCGAACGCGCATTTGGGAAAAAGGGAAAAATATTGATGTCAATTTTCATGAACTTAGAACTCTACTTAGTCGCAACAGGTTTCCTGATTTTGGAAGGAGATAACTTACATAACATGTTTCCAACCATTGGATTTGAAGTGGAGGGTTTTAAAATTGGTGGGAAAGAATGCTTCATAGTGATTGCTGCCTTCATTGTTCTGCCAACTGTATGGTTAGACAACTTGAGCCTTCTTTCCTATGTATCTGCTAGTGGGGTTTTGGCTTCTGCTATCATTCTGGGATCAATTTTGTGGACTGGTGCTCTTGACGGAGTTGGATTTCATCAGAAGGGGTCACCGATTAAGTGGAGTGGAATCCCTACTGCTGTCAGCTTATACGCCTTTTGTTATTGTGCTCATCCTGTGTTCCCTACCCTGTACACTTCTATGAAAAACAAAAAACAGTTCTCCAATGTTCTCCTTGTCTGCTTTATATTATGCACCATCTGTTATGCATCAATGGCAGTTTTTGGGTACTTAATGTTCGGGTCAACAGTTCAATCGCAGATAACTCTAAACCTCCCGACTAGCAAAATTAGCTCACAAGTCGCAATATACACCACCCTGGTCAATCCAATATCCAAATTTGCTTTGATGGTTACACCAATAATGAATGCTGCAAAAAGATGGTTTCCTGGTTACCAGAATAAAAGAGTCTTTAACATAGTAGTCAGTACCACCCTGGTAATCAGCTGTGTTATAGTAGCTTTGGCTGTACCCTTTTTCGCATATCTCATGGCACTTGTTGGAGCGTTTTTGAGTGTCACAGCTTCAATTATAATGCCATGCTTTTGCTACCTTAAGATTTCTGGCACTTATCGAAAAATAGGATGTGAGATGTTGATCATATGGGGTATAATACTACTAGGTGCTGCAGTAGTCATTTTTGGTACTTATACATCTCTGGTAGAAATAATTGGGCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

437

Amino Acids

47.54

Weight (kDa)

8.14

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	48 - 429	9.7e-61	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1163
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	14, 58
AclWI	GGATC	3 cut(s)	193, 206, 634
AcsI	RAATTY	1 cut(s)	968
AfaI	GTAC	5 cut(s)	764, 860, 1060, 1101, 1276
AfiI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
AflII	CTTAAG	1 cut(s)	1184
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	5 cut(s)	98, 169, 482, 884, 1158
AjnI	CCWGG	4 cut(s)	73, 948, 1018, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	8 cut(s)	8, 91, 243, 717, 924, 1077, 1091, 1154
AluI	AGCT	8 cut(s)	8, 91, 243, 717, 924, 1077, 1091, 1154
Alw21I	GWGCWC	2 cut(s)	649, 742
AlwI	GGATC	3 cut(s)	193, 206, 634
ApeKI	GCWGC	6 cut(s)	266, 269, 272, 530, 1001, 1256
ApoI	RAATTY	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	672
BamHI	GGATCC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	649, 742
BbvI	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
BccI	CCATC	3 cut(s)	836, 973, 1005
BciT130I	CCWGG	4 cut(s)	75, 950, 1020, 1067
BclI	TGATCA	1 cut(s)	1227
BfaI	CTAG	7 cut(s)	17, 92, 107, 321, 594, 912, 1250
BfmI	CTRYAG	3 cut(s)	270, 1257, 1310
BfrI	CTTAAG	1 cut(s)	1184
BisI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	7 cut(s)	60, 268, 271, 274, 532, 1003, 1258
Bme1390I	CCNGG	4 cut(s)	75, 950, 1020, 1067
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	4 cut(s)	75, 950, 1020, 1067
BmsI	GCATC	2 cut(s)	68, 848
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	1226
BsaJI	CCNNGG	2 cut(s)	948, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 436, 473
Bse1I	ACTGG	3 cut(s)	225, 232, 646
Bse8I	GATNNNNATC	1 cut(s)	1226
BseBI	CCWGG	4 cut(s)	75, 950, 1020, 1067
BseDI	CCNNGG	2 cut(s)	948, 1065
BseGI	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BseJI	GATNNNNATC	1 cut(s)	1226
BseLI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
BseMII	CTCAG	2 cut(s)	201, 297
BseNI	ACTGG	3 cut(s)	225, 232, 646
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
Bsh1236I	CGCG	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	649, 742
BslI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
BsmI	GAATGC	2 cut(s)	518, 1003
Bsp1286I	GDGCHC	2 cut(s)	649, 742
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	3 cut(s)	198, 626, 1227
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	14, 58
BspCNI	CTCAG	2 cut(s)	200, 296
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	2 cut(s)	274, 1261
BspPI	GGATC	3 cut(s)	193, 206, 634
BspTI	CTTAAG	1 cut(s)	1184
BsrBI	CCGCTC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	3 cut(s)	225, 232, 646
BssECI	CCNNGG	2 cut(s)	948, 1065
BssMI	GATC	3 cut(s)	198, 626, 1227
Bst2UI	CCWGG	4 cut(s)	75, 950, 1020, 1067
Bst4CI	ACNGT	3 cut(s)	553, 789, 880
BstAFI	CTTAAG	1 cut(s)	1184
BstAUI	TGTACA	1 cut(s)	762
BstDEI	CTNAG	5 cut(s)	187, 244, 283, 400, 412
BstEII	GGTNACC	2 cut(s)	678, 1022
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	201, 629, 1230
BstMBI	GATC	3 cut(s)	198, 626, 1227
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 845, 921
BstNI	CCWGG	4 cut(s)	75, 950, 1020, 1067
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	2 cut(s)	678, 1022
BstSCI	CCNGG	4 cut(s)	73, 948, 1018, 1065
BstSFI	CTRYAG	3 cut(s)	270, 1257, 1310
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BtsIMutI	CAGTG	2 cut(s)	29, 218
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
CviAII	CATG	4 cut(s)	394, 460, 1120, 1170
CviQI	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
DdeI	CTNAG	5 cut(s)	187, 244, 283, 400, 412
DpnI	GATC	3 cut(s)	200, 628, 1229
DpnII	GATC	3 cut(s)	198, 626, 1227
DraI	TTTAAA	1 cut(s)	496
Eco91I	GGTNACC	2 cut(s)	678, 1022
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO65I	GGTNACC	2 cut(s)	678, 1022
EcoRII	CCWGG	4 cut(s)	73, 948, 1018, 1065
EcoT22I	ATGCAT	1 cut(s)	841
FaeI	CATG	4 cut(s)	397, 463, 1123, 1173
FatI	CATG	4 cut(s)	393, 459, 1119, 1169
FauNDI	CATATG	1 cut(s)	1232
FbaI	TGATCA	1 cut(s)	1227
Fnu4HI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
FokI	GGATG	5 cut(s)	65, 90, 111, 729, 1227
Fsp4HI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
FspBI	CTAG	7 cut(s)	17, 92, 107, 321, 594, 912, 1250
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
GsuI	CTGGAG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	4 cut(s)	397, 463, 1123, 1173
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	5 cut(s)	110, 174, 317, 699, 1038
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	3 cut(s)	639, 765, 876
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	7 cut(s)	189, 298, 338, 394, 430, 650, 907
Hpy8I	GTNNAC	3 cut(s)	639, 765, 876
HpyAV	CCTTC	4 cut(s)	434, 544, 584, 667
HpyCH4III	ACNGT	3 cut(s)	553, 789, 880
HpyCH4V	TGCA	7 cut(s)	81, 218, 272, 825, 839, 1004, 1259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 845, 921
HpyF3I	CTNAG	5 cut(s)	187, 244, 283, 400, 412
Hsp92II	CATG	4 cut(s)	397, 463, 1123, 1173
HspAI	GCGC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	1227
Kzo9I	GATC	3 cut(s)	198, 626, 1227
LmnI	GCTCC	1 cut(s)	1133
Lsp1109I	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
LweI	GCATC	2 cut(s)	68, 848
MaeI	CTAG	7 cut(s)	17, 92, 107, 321, 594, 912, 1250
MaeIII	GTNAC	5 cut(s)	27, 678, 982, 1022, 1147
MalI	GATC	3 cut(s)	200, 628, 1229
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	198, 626, 1227
MboII	GAAGA	2 cut(s)	110, 113
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	649, 742
MluCI	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1299
MlyI	GAGTC	3 cut(s)	119, 168, 1047
MmeI	TCCRAC	4 cut(s)	138, 491, 640, 1111
MnlI	CCTC	5 cut(s)	51, 138, 224, 481, 914
Mph1103I	ATGCAT	1 cut(s)	841
MseI	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
MslI	CAYNNNNRTG	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	1077
MspCI	CTTAAG	1 cut(s)	1184
MspR9I	CCNGG	4 cut(s)	75, 950, 1020, 1067
Mva1269I	GAATGC	2 cut(s)	518, 1003
MvaI	CCWGG	4 cut(s)	75, 950, 1020, 1067
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	3 cut(s)	272, 845, 921
NdeI	CATATG	1 cut(s)	1232
NdeII	GATC	3 cut(s)	198, 626, 1227
NlaIII	CATG	4 cut(s)	397, 463, 1123, 1173
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	27, 678, 1147
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	2 cut(s)	518, 1003
PfeI	GAWTC	2 cut(s)	317, 699
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	7 cut(s)	60, 268, 271, 274, 532, 1003, 1258
PleI	GAGTC	3 cut(s)	118, 168, 1046
PpsI	GAGTC	3 cut(s)	118, 168, 1046
PscI	ACATGT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	1163
Psp6I	CCWGG	4 cut(s)	73, 948, 1018, 1065
PspEI	GGTNACC	2 cut(s)	678, 1022
PspGI	CCWGG	4 cut(s)	73, 948, 1018, 1065
PspN4I	GGNNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	851, 883
PstI	CTGCAG	2 cut(s)	274, 1261
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	1077
RsaI	GTAC	5 cut(s)	764, 860, 1060, 1101, 1276
RsaNI	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
SatI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
Sau3AI	GATC	3 cut(s)	198, 626, 1227
SchI	GAGTC	3 cut(s)	119, 168, 1047
ScrFI	CCNGG	4 cut(s)	75, 950, 1020, 1067
SduI	GDGCHC	2 cut(s)	649, 742
SfaNI	GCATC	2 cut(s)	68, 848
SfcI	CTRYAG	3 cut(s)	270, 1257, 1310
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	568, 1184
SmoI	CTYRAG	2 cut(s)	568, 1184
Sse9I	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1299
SsiI	CCGC	2 cut(s)	14, 58
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	7 cut(s)	17, 92, 107, 321, 594, 912, 1250
StyD4I	CCNGG	4 cut(s)	73, 948, 1018, 1065
TaaI	ACNGT	3 cut(s)	553, 789, 880
TaqI	TCGA	1 cut(s)	1204
TasI	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1299
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	317, 699
Tru1I	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
Tru9I	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
TscAI	CASTG	2 cut(s)	36, 225
TseFI	GTSAC	3 cut(s)	27, 678, 1147
TseI	GCWGC	6 cut(s)	266, 269, 272, 530, 1001, 1256
Tsp45I	GTSAC	3 cut(s)	27, 678, 1147
TspDTI	ATGAA	7 cut(s)	382, 410, 508, 526, 656, 788, 1010
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	36, 225
Van91I	CCANNNNNTGG	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	1184
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	968
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	7 cut(s)	17, 92, 107, 321, 594, 912, 1250
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.