Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

17637871 .. 17640071

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G157700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1365 bp

ATGCTACACCTTCAAGCAGAGACATTAATATCCATATCATCTAAGAATATTGAACCTGCATCTCTCTCTCTCTCTCAAATGAAGGACAAAACATCCTTGACCTTGCCACTTGTGTTTGAGAAGAGGCAACATGAAAGGTGCAGGCCAGATGAAGTAGGGGCAACTAACAGTGATCATCAAACTACCAACACAACCTCTTTTTTGAAAACTTGTTTCAATGGACTTAATGCCCTGTCAGGAGTTGGGATATTGTCAGTTCCTTATGCACTATCATCAGGAGGATGGCTAAGCTTGATACTTCTTTTTGTAATAGCTGCTGCTGCATTTTACTCGGGCTTGTTAATTCAAAGATGCATGGATGAGGATTCTACTATAAGAACTTATCCTGACATTGGTGAACATGCATTTGGGAAGAAGGGAAGAATAGTTTTGTCAATTTTCATGAACACAGAACTCTACTTAGTTTCAACAGCTTTCCTAATTCTAGAAGGGGATAACCTACACAACTTATTTCCAAACATTGAACTGCAAGTGTCTGGTTTCATAATTGGAGGAAAAGAATGTTTTATAATAATTGCTGCACTTATTGTGCTGCCAACTGTGTGGTTAGATAACTTGAGCCTTCTTTCTTATGTCTCTGCAAGTGGGGTTTTTGCCTCTGCTGTCATCCTTGGGTCAATTTTGTGGACTGGTGCTTTTGATGGAATTGGATTTCACCAAGAGGTATCAGTTCCACTTAATTGGAATGGAATCCCTACTTCTGTTAGCTTGTATGCCTTCTGCTATTGTGCGCATCCAGTGTTCCCTACACTCTACACATCAATGAAAAACAAATGCCAGTTCTCGAATGTCCTCCTCCTGTGCTTTATCTTATGCACCATTGGATATGCATCAATGGCAGTTTTAGGGTACTTCATGTTTGGGTCAACAGTTCAATCACAAATAACTTTAAACCTCCCAACCGAAAAACTTAGCTCAAAAATCGCAATATGGACCACCCTTATCAATCCACTATCCAAATATGCTTTAATGGTTACACCAATAATAAATTCAGCCAAAAATTGGTTTCCAAATCACTGCAATAAAAGACCCTTCGACCTTCTCCTCAGTACTAGCTTGGTAATCAGCAGTGTTGTAGTAGCTTTGGCGGTTCCTTTTTTCGCATATCTCGTGTCACTGGTTGGAGCATTTTTGAGTGTATCAGCTTCACTTCTATTTCCATGCTTTTGCTACCTTAAAATTTCAGCTACGTACAGAAATCTCGGATGTGAGATGTTGATTATAGGGTTCATAATTTTAATGGGAGCTGCAGTTATGATTCTTGGTACTTACACAGCTGTATCAGAAATAATAGAGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

455

Amino Acids

49.59

Weight (kDa)

6.49

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
Acc16I	TGCGCA	1 cut(s)	792
Acc36I	ACCTGC	1 cut(s)	64
AccB7I	CCANNNNNTGG	1 cut(s)	1062
AciI	CCGC	1 cut(s)	1148
AcsI	RAATTY	2 cut(s)	1048, 1239
AfaI	GTAC	4 cut(s)	911, 1111, 1253, 1327
AfiI	CCNNNNNNNGG	2 cut(s)	392, 1062
AgsI	TTSAA	8 cut(s)	14, 53, 205, 217, 347, 468, 524, 935
AjuI	GAANNNNNNNTTGG	4 cut(s)	390, 422, 1033, 1065
Alw26I	GTCTC	2 cut(s)	14, 640
Ama87I	CYCGRG	1 cut(s)	331
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	6 cut(s)	314, 317, 320, 578, 592, 1307
ApoI	RAATTY	2 cut(s)	1048, 1239
AseI	ATTAAT	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	993
AsuHPI	GGTGA	2 cut(s)	407, 707
AvaI	CYCGRG	1 cut(s)	331
AvaII	GGWCC	1 cut(s)	993
BaeI	ACNNNNGTAYC	2 cut(s)	1323, 1356
BauI	CACGAG	1 cut(s)	1169
BbvI	GCAGC	6 cut(s)	301, 304, 307, 565, 579, 1294
BccI	CCATC	2 cut(s)	276, 695
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BclI	TGATCA	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	14, 640
BfaI	CTAG	2 cut(s)	485, 1113
BfmI	CTRYAG	1 cut(s)	1308
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	6 cut(s)	315, 318, 321, 579, 593, 1308
BlpI	GCTNAGC	1 cut(s)	287
BlsI	GCNGC	6 cut(s)	316, 319, 322, 580, 594, 1309
BmcAI	AGTACT	1 cut(s)	1111
Bme18I	GGWCC	1 cut(s)	993
BmeT110I	CYCGRG	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	993
BmiI	GGNNCC	1 cut(s)	1152
BmsI	GCATC	4 cut(s)	68, 341, 802, 899
Bpu1102I	GCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	637
BsaAI	YACGTR	1 cut(s)	1251
BsaBI	GATNNNNATC	1 cut(s)	889
BsaJI	CCNNGG	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	1296, 1326
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 1062
Bse1I	ACTGG	4 cut(s)	694, 797, 838, 1182
Bse8I	GATNNNNATC	1 cut(s)	889
BseDI	CCNNGG	1 cut(s)	670
BseGI	GGATG	6 cut(s)	92, 287, 364, 666, 793, 1271
BseJI	GATNNNNATC	1 cut(s)	889
BseLI	CCNNNNNNNGG	2 cut(s)	392, 1062
BseMII	CTCAG	1 cut(s)	1120
BseNI	ACTGG	4 cut(s)	694, 797, 838, 1182
BseRI	GAGGAG	2 cut(s)	845, 1094
BseXI	GCAGC	6 cut(s)	301, 304, 307, 565, 579, 1294
BsgI	GTGCAG	2 cut(s)	160, 564
BshFI	GGCC	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	392, 1062
BsmAI	GTCTC	2 cut(s)	14, 640
BsnI	GGCC	1 cut(s)	145
BsoBI	CYCGRG	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	172
Bsp1720I	GCTNAGC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	1148
BspANI	GGCC	1 cut(s)	145
BspCNI	CTCAG	1 cut(s)	1119
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	1152
BspMAI	CTGCAG	1 cut(s)	1312
BspMI	ACCTGC	1 cut(s)	64
BsrI	ACTGG	4 cut(s)	694, 797, 838, 1182
BssECI	CCNNGG	1 cut(s)	670
BssMI	GATC	1 cut(s)	172
BssSI	CACGAG	1 cut(s)	1169
BssT1I	CCWWGG	1 cut(s)	670
Bst2BI	CACGAG	1 cut(s)	1169
Bst4CI	ACNGT	3 cut(s)	170, 601, 931
Bst6I	CTCTTC	1 cut(s)	116
BstBAI	YACGTR	1 cut(s)	1251
BstC8I	GCNNGC	1 cut(s)	143
BstDEI	CTNAG	5 cut(s)	42, 287, 460, 971, 1106
BstF5I	GGATG	6 cut(s)	92, 287, 364, 666, 793, 1271
BstHHI	GCGC	1 cut(s)	793
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	2 cut(s)	14, 640
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 896
BstNSI	RCATGY	1 cut(s)	404
BstSFI	CTRYAG	1 cut(s)	1308
BstSNI	TACGTA	1 cut(s)	1251
BstV1I	GCAGC	6 cut(s)	301, 304, 307, 565, 579, 1294
BstXI	CCANNNNNNTGG	2 cut(s)	603, 741
BsuRI	GGCC	1 cut(s)	145
BtsCI	GGATG	6 cut(s)	92, 287, 364, 666, 793, 1271
BtsI	GCAGTG	2 cut(s)	1075, 1135
BtsIMutI	CAGTG	5 cut(s)	175, 804, 1075, 1135, 1175
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	1 cut(s)	793
Cfr13I	GGNCC	1 cut(s)	993
Csp6I	GTAC	4 cut(s)	910, 1110, 1252, 1326
CviAII	CATG	6 cut(s)	131, 355, 401, 442, 916, 1221
CviQI	GTAC	4 cut(s)	910, 1110, 1252, 1326
DdeI	CTNAG	5 cut(s)	42, 287, 460, 971, 1106
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraI	TTTAAA	1 cut(s)	951
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco105I	TACGTA	1 cut(s)	1251
Eco130I	CCWWGG	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	993
Eco88I	CYCGRG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	670
EcoT22I	ATGCAT	3 cut(s)	356, 406, 892
ErhI	CCWWGG	1 cut(s)	670
FaeI	CATG	6 cut(s)	134, 358, 404, 445, 919, 1224
FatI	CATG	6 cut(s)	130, 354, 400, 441, 915, 1220
FbaI	TGATCA	1 cut(s)	172
Fnu4HI	GCNGC	6 cut(s)	315, 318, 321, 579, 593, 1308
FokI	GGATG	6 cut(s)	79, 294, 371, 653, 780, 1278
Fsp4HI	GCNGC	6 cut(s)	315, 318, 321, 579, 593, 1308
FspAI	RTGCGCAY	1 cut(s)	792
FspBI	CTAG	2 cut(s)	485, 1113
FspI	TGCGCA	1 cut(s)	792
GlaI	GCGC	1 cut(s)	792
GluI	GCNGC	6 cut(s)	315, 318, 321, 579, 593, 1308
HaeIII	GGCC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	793
Hin1II	CATG	6 cut(s)	134, 358, 404, 445, 919, 1224
Hin6I	GCGC	1 cut(s)	791
HinP1I	GCGC	1 cut(s)	791
HincII	GTYRAC	1 cut(s)	927
HindII	GTYRAC	1 cut(s)	927
HindIII	AAGCTT	1 cut(s)	289
HinfI	GANTC	3 cut(s)	365, 750, 1318
HphI	GGTGA	2 cut(s)	407, 707
Hpy166II	GTNNAC	3 cut(s)	398, 687, 927
Hpy188I	TCNGA	2 cut(s)	1265, 1345
Hpy188III	TCNNGA	6 cut(s)	237, 276, 386, 442, 485, 844
Hpy8I	GTNNAC	3 cut(s)	398, 687, 927
HpyAV	CCTTC	8 cut(s)	20, 76, 409, 482, 632, 787, 1102, 1109
HpyCH4III	ACNGT	3 cut(s)	170, 601, 931
HpyCH4IV	ACGT	1 cut(s)	1250
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 896
HpyF3I	CTNAG	5 cut(s)	42, 287, 460, 971, 1106
HpySE526I	ACGT	1 cut(s)	1250
Hsp92II	CATG	6 cut(s)	134, 358, 404, 445, 919, 1224
HspAI	GCGC	1 cut(s)	791
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	2 cut(s)	1184, 1304
Lsp1109I	GCAGC	6 cut(s)	301, 304, 307, 565, 579, 1294
LweI	GCATC	4 cut(s)	68, 341, 802, 899
MaeI	CTAG	2 cut(s)	485, 1113
MaeII	ACGT	1 cut(s)	1250
MaeIII	GTNAC	2 cut(s)	1033, 1173
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	3 cut(s)	133, 424, 432
MmeI	TCCRAC	1 cut(s)	1162
Mph1103I	ATGCAT	3 cut(s)	356, 406, 892
MseI	TTAA	8 cut(s)	26, 225, 341, 738, 950, 1028, 1236, 1298
MslI	CAYNNNNRTG	1 cut(s)	821
MspA1I	CMGCKG	1 cut(s)	1337
MwoI	GCNNNNNNNGC	2 cut(s)	320, 896
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	6 cut(s)	134, 358, 404, 445, 919, 1224
NlaIV	GGNNCC	1 cut(s)	1152
NmuCI	GTSAC	1 cut(s)	1173
NsbI	TGCGCA	1 cut(s)	792
NsiI	ATGCAT	3 cut(s)	356, 406, 892
NspI	RCATGY	1 cut(s)	404
PagI	TCATGA	1 cut(s)	441
PcsI	WCGNNNNNNNCGW	1 cut(s)	1167
PfeI	GAWTC	3 cut(s)	365, 750, 1318
PflMI	CCANNNNNTGG	1 cut(s)	1062
PkrI	GCNGC	6 cut(s)	316, 319, 322, 580, 594, 1309
Ppu21I	YACGTR	1 cut(s)	1251
PshBI	ATTAAT	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	1152
PspPI	GGNCC	1 cut(s)	993
PstI	CTGCAG	1 cut(s)	1312
PvuII	CAGCTG	1 cut(s)	1337
RsaI	GTAC	4 cut(s)	911, 1111, 1253, 1327
RsaNI	GTAC	4 cut(s)	910, 1110, 1252, 1326
RseI	CAYNNNNRTG	1 cut(s)	821
SaqAI	TTAA	8 cut(s)	26, 225, 341, 738, 950, 1028, 1236, 1298
SatI	GCNGC	6 cut(s)	315, 318, 321, 579, 593, 1308
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	993
ScaI	AGTACT	1 cut(s)	1111
SfaNI	GCATC	4 cut(s)	68, 341, 802, 899
SfcI	CTRYAG	1 cut(s)	1308
SinI	GGWCC	1 cut(s)	993
SmiMI	CAYNNNNRTG	1 cut(s)	821
SmlI	CTYRAG	1 cut(s)	616
SmoI	CTYRAG	1 cut(s)	616
SnaBI	TACGTA	1 cut(s)	1251
SsiI	CCGC	1 cut(s)	1148
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	2 cut(s)	485, 1113
StyI	CCWWGG	1 cut(s)	670
TaaI	ACNGT	3 cut(s)	170, 601, 931
TaiI	ACGT	1 cut(s)	1253
TaqI	TCGA	2 cut(s)	845, 1095
TatI	WGTACW	1 cut(s)	1109
TfiI	GAWTC	3 cut(s)	365, 750, 1318
Tru1I	TTAA	8 cut(s)	26, 225, 341, 738, 950, 1028, 1236, 1298
Tru9I	TTAA	8 cut(s)	26, 225, 341, 738, 950, 1028, 1236, 1298
TscAI	CASTG	5 cut(s)	175, 804, 1082, 1135, 1182
TseFI	GTSAC	1 cut(s)	1173
TseI	GCWGC	6 cut(s)	314, 317, 320, 578, 592, 1307
Tsp45I	GTSAC	1 cut(s)	1173
TspDTI	ATGAA	9 cut(s)	95, 147, 165, 430, 458, 532, 839, 904, 1279
TspRI	CASTG	5 cut(s)	175, 804, 1082, 1135, 1182
Van91I	CCANNNNNTGG	1 cut(s)	1062
VpaK11BI	GGWCC	1 cut(s)	993
VspI	ATTAAT	1 cut(s)	26
XapI	RAATTY	2 cut(s)	1048, 1239
XbaI	TCTAGA	1 cut(s)	484
XceI	RCATGY	1 cut(s)	404
XspI	CTAG	2 cut(s)	485, 1113
ZrmI	AGTACT	1 cut(s)	1111
Zsp2I	ATGCAT	3 cut(s)	356, 406, 892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.