Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

16764046 .. 16765178

Gene Structure 1133 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G153500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTCCCTCACGGAAGATCACTATGAATATACTTCTTTTTGTGATTGCTGCTGCTGCATTTTACTCAGGCTTGTTAATTCAAAGATGCATGGATGAGGATTCTACTATAAGAACTTATCCTGACATTGGTGAACATGCATTTGGGAAGAAGGGAAGAATAGATAAAAAAGACTCAAAAATCGCAATATGGACCACCCTTGTCAATCCACCACCCAAATATGCTTTAATGGTTACACCAATAATATATTCAGCCAAAAATTGGTTTCCAAATCACTGCAATAACGGGCACTTCGACCTTCTCCTCAGTTCTAGCTTGGTAATCAGCAGTGTTGTAGTAGCTTTGGCGGTTCCCTTTTTCGCATATCTCGTGTCACTGGTTGGAGCATTTTTGAGTGTATCAGCTTCACTTCTATTCCCATGCTTTTGCTACCTTAAAATTTCAGCTACGTACCGAAATCTCGGATGTGAGATGTTGATTATAGGGTTCATTATTTTAATGGGAGCTGCAGTTATGATTCTTGGTACTTACACAGCTGTATCAGAAATAATAGAGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

188

Amino Acids

20.56

Weight (kDa)

8.59

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	261
AciI	CCGC	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	438
AfaI	GTAC	2 cut(s)	452, 526
AfiI	CCNNNNNNNGG	2 cut(s)	128, 261
AgsI	TTSAA	1 cut(s)	83
AjuI	GAANNNNNNNTTGG	4 cut(s)	126, 158, 232, 264
AluBI	AGCT	6 cut(s)	315, 341, 404, 446, 506, 536
AluI	AGCT	6 cut(s)	315, 341, 404, 446, 506, 536
ApeKI	GCWGC	4 cut(s)	50, 53, 56, 506
ApoI	RAATTY	1 cut(s)	438
AspS9I	GGNCC	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	291
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BauI	CACGAG	1 cut(s)	368
BbvI	GCAGC	4 cut(s)	37, 40, 43, 493
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	4 cut(s)	51, 54, 57, 507
BlsI	GCNGC	4 cut(s)	52, 55, 58, 508
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	6, 351
BmsI	GCATC	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	450
BsaXI	ACNNNNNCTCC	2 cut(s)	495, 525
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 261
Bse1I	ACTGG	1 cut(s)	381
BseGI	GGATG	2 cut(s)	100, 470
BseLI	CCNNNNNNNGG	2 cut(s)	128, 261
BseMII	CTCAG	2 cut(s)	81, 319
BseNI	ACTGG	1 cut(s)	381
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	291
BseXI	GCAGC	4 cut(s)	37, 40, 43, 493
BslI	CCNNNNNNNGG	2 cut(s)	128, 261
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	1 cut(s)	347
BspCNI	CTCAG	2 cut(s)	80, 318
BspLI	GGNNCC	2 cut(s)	6, 351
BspMAI	CTGCAG	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	18
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
BstBAI	YACGTR	1 cut(s)	450
BstDEI	CTNAG	2 cut(s)	67, 305
BstF5I	GGATG	2 cut(s)	100, 470
BstKTI	GATC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	140
BstSFI	CTRYAG	1 cut(s)	507
BstSLI	GKGCMC	1 cut(s)	291
BstSNI	TACGTA	1 cut(s)	450
BstV1I	GCAGC	4 cut(s)	37, 40, 43, 493
BtsCI	GGATG	2 cut(s)	100, 470
BtsI	GCAGTG	2 cut(s)	274, 334
BtsIMutI	CAGTG	3 cut(s)	274, 334, 374
Cfr13I	GGNCC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	451, 525
CviAII	CATG	3 cut(s)	91, 137, 420
CviJI	RGCY	9 cut(s)	5, 72, 254, 315, 341, 404, 446, 506, 536
CviKI_1	RGCY	9 cut(s)	5, 72, 254, 315, 341, 404, 446, 506, 536
CviQI	GTAC	2 cut(s)	451, 525
DdeI	CTNAG	2 cut(s)	67, 305
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
Eco105I	TACGTA	1 cut(s)	450
Eco47I	GGWCC	1 cut(s)	192
EcoT22I	ATGCAT	2 cut(s)	92, 142
FaeI	CATG	3 cut(s)	94, 140, 423
FatI	CATG	3 cut(s)	90, 136, 419
Fnu4HI	GCNGC	4 cut(s)	51, 54, 57, 507
FokI	GGATG	2 cut(s)	107, 477
Fsp4HI	GCNGC	4 cut(s)	51, 54, 57, 507
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	4 cut(s)	51, 54, 57, 507
Hin1II	CATG	3 cut(s)	94, 140, 423
HinfI	GANTC	3 cut(s)	101, 173, 517
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188I	TCNGA	2 cut(s)	464, 544
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	145, 308
HpyCH4IV	ACGT	1 cut(s)	449
HpyCH4V	TGCA	5 cut(s)	59, 90, 140, 279, 509
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	67, 305
HpySE526I	ACGT	1 cut(s)	449
Hsp92II	CATG	3 cut(s)	94, 140, 423
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	3 cut(s)	10, 383, 503
LpnPI	CCDG	3 cut(s)	54, 135, 362
Lsp1109I	GCAGC	4 cut(s)	37, 40, 43, 493
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	449
MaeIII	GTNAC	2 cut(s)	232, 372
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	3 cut(s)	28, 160, 168
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	78, 259, 438
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	19, 91, 314
Mph1103I	ATGCAT	2 cut(s)	92, 142
MseI	TTAA	4 cut(s)	77, 227, 435, 497
MspA1I	CMGCKG	1 cut(s)	536
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	3 cut(s)	94, 140, 423
NlaIV	GGNNCC	2 cut(s)	6, 351
NmuCI	GTSAC	1 cut(s)	372
NsiI	ATGCAT	2 cut(s)	92, 142
NspI	RCATGY	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	2 cut(s)	291, 366
PfeI	GAWTC	2 cut(s)	101, 517
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	4 cut(s)	52, 55, 58, 508
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
Ppu21I	YACGTR	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	6, 351
PspPI	GGNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	2 cut(s)	452, 526
RsaNI	GTAC	2 cut(s)	451, 525
SaqAI	TTAA	4 cut(s)	77, 227, 435, 497
SatI	GCNGC	4 cut(s)	51, 54, 57, 507
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	1 cut(s)	192
SchI	GAGTC	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	9 cut(s)	300, 317, 343, 406, 435, 448, 452, 508, 538
SfaNI	GCATC	1 cut(s)	77
SfcI	CTRYAG	1 cut(s)	507
SinI	GGWCC	1 cut(s)	192
SnaBI	TACGTA	1 cut(s)	450
Sse9I	AATT	3 cut(s)	78, 259, 438
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	1 cut(s)	312
TaiI	ACGT	1 cut(s)	452
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	78, 259, 438
TfiI	GAWTC	2 cut(s)	101, 517
Tru1I	TTAA	4 cut(s)	77, 227, 435, 497
Tru9I	TTAA	4 cut(s)	77, 227, 435, 497
TscAI	CASTG	3 cut(s)	281, 334, 381
TseFI	GTSAC	1 cut(s)	372
TseI	GCWGC	4 cut(s)	50, 53, 56, 506
Tsp45I	GTSAC	1 cut(s)	372
TspDTI	ATGAA	2 cut(s)	41, 478
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	3 cut(s)	281, 334, 381
Van91I	CCANNNNNTGG	1 cut(s)	261
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	438
XceI	RCATGY	1 cut(s)	140
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	2 cut(s)	92, 142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.