Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

22868972 .. 22871057

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCGAGTCACCAGAAGTGGCAGCAAACTGATCGATCACCAAATTACTACAAACACAACTACGTCTTTTCTGAAATCATTTTTCAATGGTCTCAATGCCCTCTCAGTACTAGCTCAAGCGATCCTGTGGAGTTATAATACCCAAATTATATACACTGTTTTTAATGTGGTTTCAGGAATTGGGATACTGTCAGTTCCTTATGCGCTAGCATCAGGAGGATGGCTAAGCTTGATACTTCTTTTTGTTACTGCTGCTGCTGCATTTTACTCAGGGTTGTTAATCCAAAGATGCATGGAAGTGGATACGAGTATAAAAACTTATCCCGACATAGGGGAACAGGCATTTGGGAAAACAGGAAGAATCGTGTTGTCGATTTTCATGAACATAGAACTCTACTTAGTTGCAACAGCTTTCCTAATCATAGAGGGTGATAACTTGCACAACTTATTTCCAAACATGGATTTGCAGTTGGCTGCTTCAGGGTTCACAGTGAGTGGGAAACAATGCTTCGTTATGATCGCTGGACTTGTTGTGATGCCGACTGTGTGGTTAGATAACCTGAGTCTTCTTTCTTATGTATCGGCAACTGGGGTTTTTGCCTCTGCTATCATACTCGGCTCGATTTTTTGGGCTGGCGCTTTTGATGGAATTGGATTTCACCACGAGGGATCTGTACCACTTAATTGGAATGGAATCCCTACAGCTGTTAGCTTGTATGTCCTTTGTTATTGCGCGCATCCCGTGTTTCCTACTCTTTACACATCAATGACAAACAAACGTCAGTTTTCAAATGTCCTCCTCCTGAGCTTTATCGTATGCACTGCGAGTTACGCATCAATGGCAGTTTTAGGGTACTTAATGTTCGGGTCAGGGGTTGAGTCCCAGATAACTCTAAACCTTCCAACTCAAAAACTTAGCTCAACACTTGCAATATGCATCATCCTTGTCAATCCACTGTCCAAATACGCACTGATGGTTACACCAATTCTAAATGCAGTGAAAAAGCGGTTTCCTAGTCACTACAACAATAACATACCTTTAAGCCTATTACTGAGTACTGCCTTGGTAATCAGCAGTGTCACAGTAGCTTTGGCTTTGCCCTTTTTCGGGTATCTCATGTCACTGGTTGGAGCATTTTTTAGCGTCACGGCTTCGCTTATAATACCATGCGTTTGCTACCTAAAGATTTCAGGTATTTATCGAAAGCTCGGATGCGAGATGGTGATTGTTTGGTTTATAATTTTAGTCGGAGTTGTGGTCGTGATATTTGGTACTTACACGTCCCTATTACAAATTGTACAGCATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

437

Amino Acids

47.35

Weight (kDa)

8.65

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	48 - 428	7e-59	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	56 - 262	1e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	135, 1160, 1238
AccII	CGCG	1 cut(s)	734
AciI	CCGC	1 cut(s)	1006
AclWI	GGATC	2 cut(s)	115, 676
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	6 cut(s)	108, 675, 854, 1057, 1273, 1299
AfiI	CCNNNNNNNGG	4 cut(s)	329, 330, 1106, 1107
AflIII	ACRYGT	1 cut(s)	1278
AgsI	TTSAA	2 cut(s)	85, 789
AjiI	CACGTC	1 cut(s)	1281
AjuI	GAANNNNNNNTTGG	2 cut(s)	327, 359
AluBI	AGCT	9 cut(s)	113, 228, 410, 704, 711, 807, 918, 1088, 1207
AluI	AGCT	9 cut(s)	113, 228, 410, 704, 711, 807, 918, 1088, 1207
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	2 cut(s)	115, 676
ApeKI	GCWGC	5 cut(s)	21, 251, 254, 257, 473
AspLEI	GCGC	4 cut(s)	205, 638, 734, 736
AsuHPI	GGTGA	4 cut(s)	29, 440, 650, 1234
AsuNHI	GCTAGC	1 cut(s)	205
BauI	CACGAG	1 cut(s)	662
BbsI	GAAGAC	1 cut(s)	557
BbvI	GCAGC	5 cut(s)	33, 238, 241, 244, 460
BccI	CCATC	4 cut(s)	213, 638, 967, 1213
BceAI	ACGGC	1 cut(s)	1164
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciVI	GTATCC	2 cut(s)	177, 295
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	3 cut(s)	110, 206, 1014
BfmI	CTRYAG	1 cut(s)	699
BfoI	RGCGCY	1 cut(s)	639
BfuI	GTATCC	2 cut(s)	177, 295
BisI	GCNGC	5 cut(s)	22, 252, 255, 258, 474
BlpI	GCTNAGC	1 cut(s)	224
BlsI	GCNGC	5 cut(s)	23, 253, 256, 259, 475
BmcAI	AGTACT	2 cut(s)	108, 1057
BmgBI	CACGTC	1 cut(s)	1281
BmrI	ACTGGG	1 cut(s)	597
BmsI	GCATC	7 cut(s)	218, 278, 525, 745, 842, 945, 1202
BmtI	GCTAGC	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	597
BpiI	GAAGAC	1 cut(s)	557
Bpu10I	CCTNAGC	1 cut(s)	803
Bpu1102I	GCTNAGC	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	99
Bsa29I	ATCGAT	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	1062
BsaXI	ACNNNNNCTCC	2 cut(s)	1242, 1272
Bsc4I	CCNNNNNNNGG	4 cut(s)	329, 330, 1106, 1107
Bse1I	ACTGG	2 cut(s)	592, 1128
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	1062
BseGI	GGATG	4 cut(s)	224, 736, 939, 1217
BseLI	CCNNNNNNNGG	4 cut(s)	329, 330, 1106, 1107
BseMII	CTCAG	5 cut(s)	117, 282, 551, 794, 1043
BseNI	ACTGG	2 cut(s)	592, 1128
BsePI	GCGCGC	1 cut(s)	732
BseRI	GAGGAG	1 cut(s)	788
BseXI	GCAGC	5 cut(s)	33, 238, 241, 244, 460
Bsh1236I	CGCG	1 cut(s)	734
BshVI	ATCGAT	1 cut(s)	33
BslFI	GGGAC	2 cut(s)	865, 1267
BslI	CCNNNNNNNGG	4 cut(s)	329, 330, 1106, 1107
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	2 cut(s)	865, 1267
Bso31I	GGTCTC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	1297
Bsp143I	GATC	5 cut(s)	30, 34, 120, 516, 668
Bsp1720I	GCTNAGC	1 cut(s)	224
BspACI	CCGC	1 cut(s)	1006
BspCNI	CTCAG	5 cut(s)	116, 281, 552, 795, 1044
BspDI	ATCGAT	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	734
BspHI	TCATGA	1 cut(s)	378
BspOI	GCTAGC	1 cut(s)	209
BspPI	GGATC	2 cut(s)	115, 676
BspTNI	GGTCTC	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	1297
BsrI	ACTGG	2 cut(s)	592, 1128
BssECI	CCNNGG	1 cut(s)	1062
BssHII	GCGCGC	1 cut(s)	732
BssMI	GATC	5 cut(s)	30, 34, 120, 516, 668
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	1 cut(s)	1062
Bst2BI	CACGAG	1 cut(s)	662
Bst4CI	ACNGT	6 cut(s)	157, 189, 490, 544, 957, 1084
BstAUI	TGTACA	1 cut(s)	1297
BstC8I	GCNNGC	3 cut(s)	207, 634, 734
BstDEI	CTNAG	8 cut(s)	103, 224, 268, 397, 560, 803, 914, 1052
BstF5I	GGATG	4 cut(s)	224, 736, 939, 1217
BstFNI	CGCG	1 cut(s)	734
BstH2I	RGCGCY	1 cut(s)	639
BstHHI	GCGC	4 cut(s)	205, 638, 734, 736
BstKTI	GATC	5 cut(s)	33, 37, 123, 519, 671
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	5 cut(s)	30, 34, 120, 516, 668
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 830, 839
BstSFI	CTRYAG	1 cut(s)	699
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	5 cut(s)	33, 238, 241, 244, 460
BstV2I	GAAGAC	1 cut(s)	557
BstX2I	RGATCY	1 cut(s)	668
BstXI	CCANNNNNNTGG	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	33
BsuI	GTATCC	2 cut(s)	177, 295
BsuTUI	ATCGAT	1 cut(s)	33
BtrI	CACGTC	1 cut(s)	1281
BtsCI	GGATG	4 cut(s)	224, 736, 939, 1217
BtsI	GCAGTG	3 cut(s)	819, 1002, 1081
BtsIMutI	CAGTG	8 cut(s)	153, 495, 819, 953, 968, 1002, 1081, 1121
Cac8I	GCNNGC	3 cut(s)	207, 634, 734
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	4 cut(s)	205, 638, 734, 736
ClaI	ATCGAT	1 cut(s)	33
CseI	GACGC	1 cut(s)	1132
Csp6I	GTAC	6 cut(s)	107, 674, 853, 1056, 1272, 1298
CviAII	CATG	5 cut(s)	292, 379, 457, 1117, 1167
CviQI	GTAC	6 cut(s)	107, 674, 853, 1056, 1272, 1298
DdeI	CTNAG	8 cut(s)	103, 224, 268, 397, 560, 803, 914, 1052
DpnI	GATC	5 cut(s)	32, 36, 122, 518, 670
DpnII	GATC	5 cut(s)	30, 34, 120, 516, 668
Eco130I	CCWWGG	1 cut(s)	1062
Eco31I	GGTCTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	1062
EcoT22I	ATGCAT	2 cut(s)	293, 938
ErhI	CCWWGG	1 cut(s)	1062
FaeI	CATG	5 cut(s)	295, 382, 460, 1120, 1170
FaqI	GGGAC	2 cut(s)	865, 1267
FatI	CATG	5 cut(s)	291, 378, 456, 1116, 1166
Fnu4HI	GCNGC	5 cut(s)	22, 252, 255, 258, 474
FokI	GGATG	4 cut(s)	231, 723, 926, 1224
Fsp4HI	GCNGC	5 cut(s)	22, 252, 255, 258, 474
FspBI	CTAG	3 cut(s)	110, 206, 1014
GlaI	GCGC	4 cut(s)	204, 637, 733, 735
GluI	GCNGC	5 cut(s)	22, 252, 255, 258, 474
HaeII	RGCGCY	1 cut(s)	639
HgaI	GACGC	1 cut(s)	1132
HhaI	GCGC	4 cut(s)	205, 638, 734, 736
Hin1II	CATG	5 cut(s)	295, 382, 460, 1120, 1170
Hin6I	GCGC	4 cut(s)	203, 636, 732, 734
HinP1I	GCGC	4 cut(s)	203, 636, 732, 734
HindIII	AAGCTT	1 cut(s)	226
HinfI	GANTC	5 cut(s)	6, 360, 562, 693, 878
HphI	GGTGA	4 cut(s)	29, 440, 650, 1234
Hpy166II	GTNNAC	1 cut(s)	486
Hpy188I	TCNGA	3 cut(s)	72, 1211, 1250
Hpy188III	TCNNGA	6 cut(s)	174, 213, 323, 379, 802, 1261
Hpy8I	GTNNAC	1 cut(s)	486
HpyAV	CCTTC	1 cut(s)	908
HpyCH4III	ACNGT	6 cut(s)	157, 189, 490, 544, 957, 1084
HpyCH4IV	ACGT	3 cut(s)	62, 778, 1280
HpyCH4V	TGCA	9 cut(s)	260, 291, 404, 439, 466, 819, 929, 936, 995
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 830, 839
HpyF3I	CTNAG	8 cut(s)	103, 224, 268, 397, 560, 803, 914, 1052
HpySE526I	ACGT	3 cut(s)	62, 778, 1280
Hsp92II	CATG	5 cut(s)	295, 382, 460, 1120, 1170
HspAI	GCGC	4 cut(s)	203, 636, 732, 734
Kzo9I	GATC	5 cut(s)	30, 34, 120, 516, 668
LmnI	GCTCC	1 cut(s)	1130
Lsp1109I	GCAGC	5 cut(s)	33, 238, 241, 244, 460
LweI	GCATC	7 cut(s)	218, 278, 525, 745, 842, 945, 1202
MaeI	CTAG	3 cut(s)	110, 206, 1014
MaeII	ACGT	3 cut(s)	62, 778, 1280
MaeIII	GTNAC	8 cut(s)	7, 244, 827, 976, 1016, 1078, 1119, 1144
MalI	GATC	5 cut(s)	32, 36, 122, 518, 670
MboI	GATC	5 cut(s)	30, 34, 120, 516, 668
MboII	GAAGA	2 cut(s)	369, 557
MflI	RGATCY	1 cut(s)	668
MluCI	AATT	8 cut(s)	42, 144, 177, 648, 682, 984, 1239, 1293
MlyI	GAGTC	3 cut(s)	15, 571, 887
MmeI	TCCRAC	3 cut(s)	926, 1108, 1228
MnlI	CCTC	7 cut(s)	110, 209, 418, 610, 658, 806, 809
Mph1103I	ATGCAT	2 cut(s)	293, 938
MseI	TTAA	5 cut(s)	162, 278, 681, 857, 1040
MslI	CAYNNNNRTG	2 cut(s)	296, 764
MspA1I	CMGCKG	1 cut(s)	704
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	3 cut(s)	257, 830, 839
NdeII	GATC	5 cut(s)	30, 34, 120, 516, 668
NheI	GCTAGC	1 cut(s)	205
NlaIII	CATG	5 cut(s)	295, 382, 460, 1120, 1170
NmeAIII	GCCGAG	1 cut(s)	594
NmuCI	GTSAC	5 cut(s)	7, 1016, 1078, 1119, 1144
NsiI	ATGCAT	2 cut(s)	293, 938
PagI	TCATGA	1 cut(s)	378
PauI	GCGCGC	1 cut(s)	732
PfeI	GAWTC	2 cut(s)	360, 693
PkrI	GCNGC	5 cut(s)	23, 253, 256, 259, 475
PleI	GAGTC	3 cut(s)	14, 570, 886
PpsI	GAGTC	3 cut(s)	14, 570, 886
PsiI	TTATAA	3 cut(s)	135, 1160, 1238
PsrI	GAACNNNNNNTAC	2 cut(s)	845, 877
PsuI	RGATCY	1 cut(s)	668
PteI	GCGCGC	1 cut(s)	732
PvuII	CAGCTG	1 cut(s)	704
RsaI	GTAC	6 cut(s)	108, 675, 854, 1057, 1273, 1299
RsaNI	GTAC	6 cut(s)	107, 674, 853, 1056, 1272, 1298
RseI	CAYNNNNRTG	2 cut(s)	296, 764
SaqAI	TTAA	5 cut(s)	162, 278, 681, 857, 1040
SatI	GCNGC	5 cut(s)	22, 252, 255, 258, 474
Sau3AI	GATC	5 cut(s)	30, 34, 120, 516, 668
ScaI	AGTACT	2 cut(s)	108, 1057
SchI	GAGTC	3 cut(s)	15, 571, 887
SfaNI	GCATC	7 cut(s)	218, 278, 525, 745, 842, 945, 1202
SfcI	CTRYAG	1 cut(s)	699
SmiMI	CAYNNNNRTG	2 cut(s)	296, 764
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	8 cut(s)	42, 144, 177, 648, 682, 984, 1239, 1293
SsiI	CCGC	1 cut(s)	1006
SspMI	CTAG	3 cut(s)	110, 206, 1014
StyI	CCWWGG	1 cut(s)	1062
TaaI	ACNGT	6 cut(s)	157, 189, 490, 544, 957, 1084
TaiI	ACGT	3 cut(s)	65, 781, 1283
TaqI	TCGA	4 cut(s)	33, 371, 620, 1201
TasI	AATT	8 cut(s)	42, 144, 177, 648, 682, 984, 1239, 1293
TatI	WGTACW	3 cut(s)	106, 1055, 1297
TfiI	GAWTC	2 cut(s)	360, 693
Tru1I	TTAA	5 cut(s)	162, 278, 681, 857, 1040
Tru9I	TTAA	5 cut(s)	162, 278, 681, 857, 1040
TscAI	CASTG	8 cut(s)	160, 495, 826, 960, 975, 1002, 1081, 1128
TseFI	GTSAC	5 cut(s)	7, 1016, 1078, 1119, 1144
TseI	GCWGC	5 cut(s)	21, 251, 254, 257, 473
Tsp45I	GTSAC	5 cut(s)	7, 1016, 1078, 1119, 1144
TspDTI	ATGAA	2 cut(s)	367, 395
TspRI	CASTG	8 cut(s)	160, 495, 826, 960, 975, 1002, 1081, 1128
XspI	CTAG	3 cut(s)	110, 206, 1014
ZrmI	AGTACT	2 cut(s)	108, 1057
Zsp2I	ATGCAT	2 cut(s)	293, 938

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.