Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Reverse (-)

77545457 .. 77547507

Gene Structure 2051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGGAAGCTGAACCGCTAGATAAATCGTCACTGACCACTCCTCTTGTCGTGGATGAGCGGCAATATGATGAGCCAGGATGCAATACCAAGCTGGTTGAAGAAGAACTAGAGTCCAACAATTCTCATCCTCAAAGTAAAGCCACAACATCTACTCTCAAAACCTGTTTCAATGGACTCAATGCTCTCTCAGGAGTTGGGATCCTATCAGTTCCTTATGCACTGGCAACTGGAGGGTGGTCAAGCTTAGCACTTCTGTTTTTGTTCGCTGCTGCAGCCTTTTACTCAGGCTTGTTAATCAAGAGATGTATGGATATGGATTCTAGCATAAGAACTTATCCTGAAATAGGCGAACGCGCATTTGGGAAAAAGGGAAAAATATTGATGTCAATTTTCATGAACTTAGAACTCTACTTAGTCGCAACAGGTTTCCTGATTTTGGAAGGAGATAACTTACATAACATGTTTCCAACCATTGGATTTGAAGTGGAGGGTTTTAAAATTGGTGGGAAAGAATGCTTCATAGTGATTGCTGCCTTCATTGTTCTGCCAACTGTTTGGTTAGACAACTTGAGCCTTCTTTCCTATGTATCTGCTAGTGGGGTTTTGGCTTCTGCTATCATTCTGGGATCAATTTTGTGGACTGGTGCTCTTGACGGAGTTGGATTTCATCAGAAGGGGTCACCGATTAAGTGGAGTGGAATCCCTACTGCTGTCAGCTTATACGCCTTTTGTTATTGTGCTCATCCTGTGTTCCCTACCCTGTACACTTCTATGAAAAACAAAAAACAGTTCTCCAATGTTCTCCTTGTCTGCTTTATATTATGCACCATCTGTTATGCATCAATGGCAGTTTTTGGGTACTTAATGTTCGGGTCAACAGTTCAATCGCAGATAACTCTAAACCTCCCGACTAGCAAAATTAGTTCACAAGTCGCAATATACACCACCCTGGTCAATCCAATATCCAAATTTGCTTTGATGGTTACACCAATAGTGAATGCTGCAAAAAGATGGTTTCCTGGTTACCAGAATAAAAGATTCTTTAACATATTAGTCAGTACCACCCTGGTAATCAGCTGTGTTATAGTAGCTTTGGCTGTACCCTTTTTCGCATATCTCATGGCACTTGTTGGAGCGTTTTTGAGTGTCACAGCTTCAATTATAATGCCATGCTTTTGCTACCTTAAGATTTCTGGCACTTATCGAAAAATTGGATGTGAGATGTTGATCATATGGGGTATAATACTACTAGGTGCTGCAGTAGTCATTTTTGGTACTTACACATCTCTGGTAGAAATAATAGGGCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

437

Amino Acids

47.55

Weight (kDa)

8.14

Isoelectric Point (pI)

34.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	48 - 429	9.1e-61	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1163
AccB7I	CCANNNNNTGG	1 cut(s)	473
AccBSI	CCGCTC	1 cut(s)	58
AccII	CGCG	1 cut(s)	354
AciI	CCGC	2 cut(s)	14, 58
AclWI	GGATC	3 cut(s)	193, 206, 634
AcsI	RAATTY	1 cut(s)	968
AfaI	GTAC	5 cut(s)	764, 860, 1060, 1101, 1276
AfiI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
AflII	CTTAAG	1 cut(s)	1184
AflIII	ACRYGT	1 cut(s)	459
AgsI	TTSAA	5 cut(s)	98, 169, 482, 884, 1158
AjnI	CCWGG	4 cut(s)	73, 948, 1018, 1065
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	7 cut(s)	8, 91, 243, 717, 1077, 1091, 1154
AluI	AGCT	7 cut(s)	8, 91, 243, 717, 1077, 1091, 1154
Alw21I	GWGCWC	2 cut(s)	649, 742
AlwI	GGATC	3 cut(s)	193, 206, 634
ApeKI	GCWGC	6 cut(s)	266, 269, 272, 530, 1001, 1256
ApoI	RAATTY	1 cut(s)	968
AspLEI	GCGC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	672
BamHI	GGATCC	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	649, 742
BbvI	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
BccI	CCATC	3 cut(s)	836, 973, 1005
BciT130I	CCWGG	4 cut(s)	75, 950, 1020, 1067
BclI	TGATCA	1 cut(s)	1227
BfaI	CTAG	6 cut(s)	17, 107, 321, 594, 912, 1250
BfmI	CTRYAG	3 cut(s)	270, 1257, 1310
BfrI	CTTAAG	1 cut(s)	1184
BisI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
BlpI	GCTNAGC	1 cut(s)	244
BlsI	GCNGC	7 cut(s)	60, 268, 271, 274, 532, 1003, 1258
Bme1390I	CCNGG	4 cut(s)	75, 950, 1020, 1067
BmiI	GGNNCC	1 cut(s)	200
BmrFI	CCNGG	4 cut(s)	75, 950, 1020, 1067
BmsI	GCATC	2 cut(s)	68, 848
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	1226
BsaJI	CCNNGG	2 cut(s)	948, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	344, 436, 473
Bse1I	ACTGG	3 cut(s)	225, 232, 646
Bse8I	GATNNNNATC	1 cut(s)	1226
BseBI	CCWGG	4 cut(s)	75, 950, 1020, 1067
BseDI	CCNNGG	2 cut(s)	948, 1065
BseGI	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BseJI	GATNNNNATC	1 cut(s)	1226
BseLI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
BseMII	CTCAG	2 cut(s)	201, 297
BseNI	ACTGG	3 cut(s)	225, 232, 646
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
Bsh1236I	CGCG	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	649, 742
BslI	CCNNNNNNNGG	3 cut(s)	344, 436, 473
BsmI	GAATGC	2 cut(s)	518, 1003
Bsp1286I	GDGCHC	2 cut(s)	649, 742
Bsp1407I	TGTACA	1 cut(s)	762
Bsp143I	GATC	3 cut(s)	198, 626, 1227
Bsp1720I	GCTNAGC	1 cut(s)	244
BspACI	CCGC	2 cut(s)	14, 58
BspCNI	CTCAG	2 cut(s)	200, 296
BspFNI	CGCG	1 cut(s)	354
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	200
BspMAI	CTGCAG	2 cut(s)	274, 1261
BspPI	GGATC	3 cut(s)	193, 206, 634
BspTI	CTTAAG	1 cut(s)	1184
BsrBI	CCGCTC	1 cut(s)	58
BsrGI	TGTACA	1 cut(s)	762
BsrI	ACTGG	3 cut(s)	225, 232, 646
BssECI	CCNNGG	2 cut(s)	948, 1065
BssMI	GATC	3 cut(s)	198, 626, 1227
Bst2UI	CCWGG	4 cut(s)	75, 950, 1020, 1067
Bst4CI	ACNGT	3 cut(s)	553, 789, 880
BstAFI	CTTAAG	1 cut(s)	1184
BstAUI	TGTACA	1 cut(s)	762
BstDEI	CTNAG	5 cut(s)	187, 244, 283, 400, 412
BstEII	GGTNACC	2 cut(s)	678, 1022
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BstFNI	CGCG	1 cut(s)	354
BstHHI	GCGC	1 cut(s)	356
BstKTI	GATC	3 cut(s)	201, 629, 1230
BstMBI	GATC	3 cut(s)	198, 626, 1227
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 845
BstNI	CCWGG	4 cut(s)	75, 950, 1020, 1067
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	2 cut(s)	678, 1022
BstSCI	CCNGG	4 cut(s)	73, 948, 1018, 1065
BstSFI	CTRYAG	3 cut(s)	270, 1257, 1310
BstUI	CGCG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
BstX2I	RGATCY	1 cut(s)	198
BstXI	CCANNNNNNTGG	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	198
BtsCI	GGATG	5 cut(s)	58, 83, 124, 742, 1220
BtsIMutI	CAGTG	2 cut(s)	29, 218
CciI	TCATGA	1 cut(s)	393
CfoI	GCGC	1 cut(s)	356
Csp6I	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	4 cut(s)	394, 460, 1120, 1170
CviQI	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
DdeI	CTNAG	5 cut(s)	187, 244, 283, 400, 412
DpnI	GATC	3 cut(s)	200, 628, 1229
DpnII	GATC	3 cut(s)	198, 626, 1227
DraI	TTTAAA	1 cut(s)	496
Eco91I	GGTNACC	2 cut(s)	678, 1022
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO65I	GGTNACC	2 cut(s)	678, 1022
EcoRII	CCWGG	4 cut(s)	73, 948, 1018, 1065
EcoT22I	ATGCAT	1 cut(s)	841
FaeI	CATG	4 cut(s)	397, 463, 1123, 1173
FatI	CATG	4 cut(s)	393, 459, 1119, 1169
FauNDI	CATATG	1 cut(s)	1232
FbaI	TGATCA	1 cut(s)	1227
Fnu4HI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
FokI	GGATG	5 cut(s)	65, 90, 111, 729, 1227
Fsp4HI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
FspBI	CTAG	6 cut(s)	17, 107, 321, 594, 912, 1250
GlaI	GCGC	1 cut(s)	355
GluI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
GsuI	CTGGAG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	356
Hin1II	CATG	4 cut(s)	397, 463, 1123, 1173
Hin6I	GCGC	1 cut(s)	354
HinP1I	GCGC	1 cut(s)	354
HincII	GTYRAC	1 cut(s)	876
HindII	GTYRAC	1 cut(s)	876
HindIII	AAGCTT	1 cut(s)	241
HinfI	GANTC	5 cut(s)	110, 174, 317, 699, 1038
HphI	GGTGA	1 cut(s)	672
Hpy166II	GTNNAC	4 cut(s)	639, 765, 876, 926
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	7 cut(s)	189, 298, 338, 394, 430, 650, 907
Hpy8I	GTNNAC	4 cut(s)	639, 765, 876, 926
HpyAV	CCTTC	4 cut(s)	434, 544, 584, 667
HpyCH4III	ACNGT	3 cut(s)	553, 789, 880
HpyCH4V	TGCA	7 cut(s)	81, 218, 272, 825, 839, 1004, 1259
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 845
HpyF3I	CTNAG	5 cut(s)	187, 244, 283, 400, 412
Hsp92II	CATG	4 cut(s)	397, 463, 1123, 1173
HspAI	GCGC	1 cut(s)	354
Ksp22I	TGATCA	1 cut(s)	1227
Kzo9I	GATC	3 cut(s)	198, 626, 1227
LmnI	GCTCC	1 cut(s)	1133
Lsp1109I	GCAGC	6 cut(s)	253, 256, 284, 517, 988, 1243
LweI	GCATC	2 cut(s)	68, 848
MaeI	CTAG	6 cut(s)	17, 107, 321, 594, 912, 1250
MaeIII	GTNAC	5 cut(s)	27, 678, 982, 1022, 1147
MalI	GATC	3 cut(s)	200, 628, 1229
MbiI	CCGCTC	1 cut(s)	58
MboI	GATC	3 cut(s)	198, 626, 1227
MboII	GAAGA	2 cut(s)	110, 113
MflI	RGATCY	1 cut(s)	198
MhlI	GDGCHC	2 cut(s)	649, 742
MluCI	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1209
MlyI	GAGTC	2 cut(s)	119, 168
MmeI	TCCRAC	4 cut(s)	138, 491, 640, 1111
MnlI	CCTC	5 cut(s)	51, 138, 224, 481, 914
Mph1103I	ATGCAT	1 cut(s)	841
MseI	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
MslI	CAYNNNNRTG	1 cut(s)	770
MspA1I	CMGCKG	1 cut(s)	1077
MspCI	CTTAAG	1 cut(s)	1184
MspR9I	CCNGG	4 cut(s)	75, 950, 1020, 1067
Mva1269I	GAATGC	2 cut(s)	518, 1003
MvaI	CCWGG	4 cut(s)	75, 950, 1020, 1067
MvnI	CGCG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	272, 845
NdeI	CATATG	1 cut(s)	1232
NdeII	GATC	3 cut(s)	198, 626, 1227
NlaIII	CATG	4 cut(s)	397, 463, 1123, 1173
NlaIV	GGNNCC	1 cut(s)	200
NmuCI	GTSAC	3 cut(s)	27, 678, 1147
NsiI	ATGCAT	1 cut(s)	841
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	2 cut(s)	518, 1003
PfeI	GAWTC	3 cut(s)	317, 699, 1038
PflMI	CCANNNNNTGG	1 cut(s)	473
PkrI	GCNGC	7 cut(s)	60, 268, 271, 274, 532, 1003, 1258
PleI	GAGTC	2 cut(s)	118, 168
PpsI	GAGTC	2 cut(s)	118, 168
PscI	ACATGT	1 cut(s)	459
PsiI	TTATAA	1 cut(s)	1163
Psp6I	CCWGG	4 cut(s)	73, 948, 1018, 1065
PspEI	GGTNACC	2 cut(s)	678, 1022
PspGI	CCWGG	4 cut(s)	73, 948, 1018, 1065
PspN4I	GGNNCC	1 cut(s)	200
PsrI	GAACNNNNNNTAC	2 cut(s)	851, 883
PstI	CTGCAG	2 cut(s)	274, 1261
PsuI	RGATCY	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	1077
RsaI	GTAC	5 cut(s)	764, 860, 1060, 1101, 1276
RsaNI	GTAC	5 cut(s)	763, 859, 1059, 1100, 1275
RseI	CAYNNNNRTG	1 cut(s)	770
SaqAI	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
SatI	GCNGC	7 cut(s)	59, 267, 270, 273, 531, 1002, 1257
Sau3AI	GATC	3 cut(s)	198, 626, 1227
SchI	GAGTC	2 cut(s)	119, 168
ScrFI	CCNGG	4 cut(s)	75, 950, 1020, 1067
SduI	GDGCHC	2 cut(s)	649, 742
SfaNI	GCATC	2 cut(s)	68, 848
SfcI	CTRYAG	3 cut(s)	270, 1257, 1310
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	2 cut(s)	568, 1184
SmoI	CTYRAG	2 cut(s)	568, 1184
Sse9I	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1209
SsiI	CCGC	2 cut(s)	14, 58
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	6 cut(s)	17, 107, 321, 594, 912, 1250
StyD4I	CCNGG	4 cut(s)	73, 948, 1018, 1065
TaaI	ACNGT	3 cut(s)	553, 789, 880
TaqI	TCGA	1 cut(s)	1204
TasI	AATT	8 cut(s)	118, 387, 498, 630, 918, 968, 1158, 1209
TatI	WGTACW	1 cut(s)	762
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	317, 699, 1038
Tru1I	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
Tru9I	TTAA	6 cut(s)	293, 495, 687, 863, 1044, 1185
TscAI	CASTG	2 cut(s)	36, 225
TseFI	GTSAC	3 cut(s)	27, 678, 1147
TseI	GCWGC	6 cut(s)	266, 269, 272, 530, 1001, 1256
Tsp45I	GTSAC	3 cut(s)	27, 678, 1147
TspDTI	ATGAA	6 cut(s)	382, 410, 508, 526, 656, 788
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	2 cut(s)	36, 225
Van91I	CCANNNNNTGG	1 cut(s)	473
Vha464I	CTTAAG	1 cut(s)	1184
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	968
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	6 cut(s)	17, 107, 321, 594, 912, 1250
Zsp2I	ATGCAT	1 cut(s)	841

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.