Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Reverse (-)

36470666 .. 36472930

Gene Structure 2265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48490.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGACGCTGAACCGCTCGATAAATCGTCACTGAGCACTCCTCTTATCGTGGATGAGCGGCAATACCATGAGCCAGGCAGCAAGATTAAGGTAGTTGAAGAAGATTTAGAGTCCAACAACTCCCATCCTCAAAGTAAAGCCACAACATCTACTCTCAAAACCTGTTTCAATGGACTCAATGCTCTCTCAGGAGTTGGGATACTATCAGTTCCTTATGCACTGGCAACTGGAGGGTGGTCAAGTTTAGCACTTCTGTTTTTGATCGCTGCTTCGGCCTTTTACACAGGCTTGTTAATCAAGAGATGTATGGATATGGATTCTAGCATAAGAACTTATCCTGACATAGGCGAACGGGCATTTGGGCAAAAGGGAAAACTTTTGATGTCAGTTTTCATGAACATAGAACTCTACTTGGTTGCTACAGGTTTCCTGATTTTGGAAGGCGATAACTTACATAACATGTTTCCCATGGGATTTGAAGTGGAGGGTCTTAAAATTGGTGGTAAAGAATGCTTCATAGTGATTGTTGGCCTCATTGTTCTGCCAACTGTTTGGTTAGACAACTTGAGCCTTCTTTCTTATGTATCTGCTAGTGGGGTTTTTGCTTCTGCTGTCATTCTGGGATCAATTTTGTGGACCGGTGCTTTTGATGGAGTTGGATTTCATCAAAAGGGGTCACCGATTAAGTGGAGTGGAATCCCTACTGCTATCAGCTTATACGCCTTCTGTTACTGTGCTCATCCTGTGTTCCCTACCCTGTACACTTCTATGAAACACAAAAAACAGTTCTCCAATGTTCTCCTCATCTGCTTCATATTATGCACCATCTGTTATGCATCAATGGCAGTTTTCGGGTACTTAATGTTCGGGTCAACAGTTCAATCACAGATAACCCTAAACCTTCCAACTAACAAGGTTAGCTCACAAGTCGCAATATACACCACCCTGGTCAATCCGATATCCAAATTTGCTTTGATGGTTACTCCAATAATGGTTGCTGTAAAAAGAAGGTTTCCTCATTACCAGAATAAAAGATTCTTTAACATATTAGTCAGTACCACCCTGGTAATCAGCTGTGTTATAGTAGCTTTGGCGGTGCCCTTTTTCGCATATCTCATGGCACTTGTTGGAGCGTTTTTGAGTGTCACAGCTTCAATAATAATGCCATGCTTGTGCTACCTGAAGATTTCTGGCACTTATCGAAGAATTGGATGTGAGATGTTGATCATATGGGGTATAATACTACTAGGTGCTGCAGTTGTCATACTTGGTACTTACACATCTCTGGAAGAAATAATAGGGCACTTGTTGGAGCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

441

Amino Acids

48.11

Weight (kDa)

8.18

Isoelectric Point (pI)

37.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	19 - 385	3.6e-59	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1096
AccBSI	CCGCTC	2 cut(s)	16, 58
AciI	CCGC	3 cut(s)	14, 58, 1094
AclWI	GGATC	1 cut(s)	631
AcsI	RAATTY	1 cut(s)	965
AcuI	CTGAAG	1 cut(s)	1202
AfaI	GTAC	4 cut(s)	761, 857, 1057, 1273
AfiI	CCNNNNNNNGG	2 cut(s)	344, 436
AflIII	ACRYGT	1 cut(s)	459
AgeI	ACCGGT	1 cut(s)	638
AgsI	TTSAA	5 cut(s)	98, 169, 479, 881, 1155
AjnI	CCWGG	3 cut(s)	73, 945, 1062
AjuI	GAANNNNNNNTTGG	2 cut(s)	342, 374
AluBI	AGCT	5 cut(s)	714, 921, 1074, 1088, 1151
AluI	AGCT	5 cut(s)	714, 921, 1074, 1088, 1151
Alw21I	GWGCWC	2 cut(s)	38, 739
AlwI	GGATC	1 cut(s)	631
AoxI	GGCC	2 cut(s)	273, 529
ApeKI	GCWGC	3 cut(s)	78, 266, 1253
ApoI	RAATTY	1 cut(s)	965
AsiGI	ACCGGT	1 cut(s)	638
AspS9I	GGNCC	1 cut(s)	636
AsuHPI	GGTGA	1 cut(s)	669
AvaII	GGWCC	1 cut(s)	636
BaeGI	GKGCMC	2 cut(s)	1101, 1305
BanI	GGYRCC	1 cut(s)	1096
Bbv12I	GWGCWC	2 cut(s)	38, 739
BbvI	GCAGC	3 cut(s)	90, 253, 1240
BccI	CCATC	4 cut(s)	132, 644, 833, 970
BciT130I	CCWGG	3 cut(s)	75, 947, 1064
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	1224
BfaI	CTAG	3 cut(s)	321, 591, 1247
BfmI	CTRYAG	2 cut(s)	420, 1254
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	59, 79, 267, 1254
BlsI	GCNGC	4 cut(s)	60, 80, 268, 1255
Bme1390I	CCNGG	3 cut(s)	75, 947, 1064
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	1 cut(s)	636
BmiI	GGNNCC	1 cut(s)	1098
BmrFI	CCNGG	3 cut(s)	75, 947, 1064
BmsI	GCATC	1 cut(s)	845
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	586
BsaBI	GATNNNNATC	1 cut(s)	1223
BsaJI	CCNNGG	3 cut(s)	468, 945, 1062
BsaWI	WCCGGW	1 cut(s)	638
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 436
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	225, 232
Bse8I	GATNNNNATC	1 cut(s)	1223
BseBI	CCWGG	3 cut(s)	75, 947, 1064
BseDI	CCNNGG	3 cut(s)	468, 945, 1062
BseGI	GGATG	4 cut(s)	58, 124, 739, 1217
BseJI	GATNNNNATC	1 cut(s)	1223
BseLI	CCNNNNNNNGG	2 cut(s)	344, 436
BseMII	CTCAG	2 cut(s)	23, 201
BseNI	ACTGG	2 cut(s)	225, 232
BseRI	GAGGAG	2 cut(s)	30, 791
BseSI	GKGCMC	2 cut(s)	1101, 1305
BseXI	GCAGC	3 cut(s)	90, 253, 1240
BshFI	GGCC	2 cut(s)	275, 531
BshNI	GGYRCC	1 cut(s)	1096
BshTI	ACCGGT	1 cut(s)	638
BsiHKAI	GWGCWC	2 cut(s)	38, 739
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	344, 436
BsmI	GAATGC	1 cut(s)	515
BsnI	GGCC	2 cut(s)	275, 531
Bsp1286I	GDGCHC	4 cut(s)	38, 739, 1101, 1305
Bsp1407I	TGTACA	1 cut(s)	759
Bsp143I	GATC	3 cut(s)	261, 623, 1224
Bsp19I	CCATGG	1 cut(s)	468
BspACI	CCGC	3 cut(s)	14, 58, 1094
BspANI	GGCC	2 cut(s)	275, 531
BspCNI	CTCAG	2 cut(s)	24, 200
BspHI	TCATGA	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	1098
BspMAI	CTGCAG	1 cut(s)	1258
BspPI	GGATC	1 cut(s)	631
BspT107I	GGYRCC	1 cut(s)	1096
BsrBI	CCGCTC	2 cut(s)	16, 58
BsrFI	RCCGGY	1 cut(s)	638
BsrGI	TGTACA	1 cut(s)	759
BsrI	ACTGG	2 cut(s)	225, 232
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	468, 945, 1062
BssMI	GATC	3 cut(s)	261, 623, 1224
BssT1I	CCWWGG	1 cut(s)	468
Bst2UI	CCWGG	3 cut(s)	75, 947, 1064
Bst4CI	ACNGT	4 cut(s)	550, 734, 786, 877
BstAUI	TGTACA	1 cut(s)	759
BstDEI	CTNAG	2 cut(s)	32, 187
BstDSI	CCRYGG	1 cut(s)	468
BstEII	GGTNACC	1 cut(s)	675
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstF5I	GGATG	4 cut(s)	58, 124, 739, 1217
BstKTI	GATC	3 cut(s)	264, 626, 1227
BstMBI	GATC	3 cut(s)	261, 623, 1224
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 842
BstNI	CCWGG	3 cut(s)	75, 947, 1064
BstNSI	RCATGY	1 cut(s)	463
BstPI	GGTNACC	1 cut(s)	675
BstSCI	CCNGG	3 cut(s)	73, 945, 1062
BstSFI	CTRYAG	2 cut(s)	420, 1254
BstSLI	GKGCMC	2 cut(s)	1101, 1305
BstV1I	GCAGC	3 cut(s)	90, 253, 1240
BstXI	CCANNNNNNTGG	1 cut(s)	552
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	275, 531
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	4 cut(s)	58, 124, 739, 1217
BtsIMutI	CAGTG	2 cut(s)	29, 218
CciI	TCATGA	1 cut(s)	393
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	1 cut(s)	636
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	4 cut(s)	760, 856, 1056, 1272
CspAI	ACCGGT	1 cut(s)	638
CviAII	CATG	6 cut(s)	68, 394, 460, 469, 1117, 1167
CviQI	GTAC	4 cut(s)	760, 856, 1056, 1272
DdeI	CTNAG	2 cut(s)	32, 187
DpnI	GATC	3 cut(s)	263, 625, 1226
DpnII	GATC	3 cut(s)	261, 623, 1224
Eco130I	CCWWGG	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	960
Eco47I	GGWCC	1 cut(s)	636
Eco57I	CTGAAG	1 cut(s)	1202
Eco91I	GGTNACC	1 cut(s)	675
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoO65I	GGTNACC	1 cut(s)	675
EcoRII	CCWGG	3 cut(s)	73, 945, 1062
EcoRV	GATATC	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	468
EcoT22I	ATGCAT	1 cut(s)	838
ErhI	CCWWGG	1 cut(s)	468
FaeI	CATG	6 cut(s)	71, 397, 463, 472, 1120, 1170
FatI	CATG	6 cut(s)	67, 393, 459, 468, 1116, 1166
FauNDI	CATATG	1 cut(s)	1229
FbaI	TGATCA	1 cut(s)	1224
Fnu4HI	GCNGC	4 cut(s)	59, 79, 267, 1254
FokI	GGATG	4 cut(s)	65, 111, 726, 1224
Fsp4HI	GCNGC	4 cut(s)	59, 79, 267, 1254
FspBI	CTAG	3 cut(s)	321, 591, 1247
GluI	GCNGC	4 cut(s)	59, 79, 267, 1254
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	275, 531
HapII	CCGG	1 cut(s)	639
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	6 cut(s)	71, 397, 463, 472, 1120, 1170
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HinfI	GANTC	5 cut(s)	110, 174, 317, 696, 1035
HpaII	CCGG	1 cut(s)	639
HphI	GGTGA	1 cut(s)	669
Hpy166II	GTNNAC	3 cut(s)	636, 762, 873
Hpy188I	TCNGA	1 cut(s)	957
Hpy188III	TCNNGA	6 cut(s)	189, 298, 338, 394, 430, 1286
Hpy8I	GTNNAC	3 cut(s)	636, 762, 873
HpyAV	CCTTC	5 cut(s)	434, 581, 733, 911, 1002
HpyCH4III	ACNGT	4 cut(s)	550, 734, 786, 877
HpyCH4V	TGCA	4 cut(s)	218, 822, 836, 1256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 842
HpyF3I	CTNAG	2 cut(s)	32, 187
Hsp92II	CATG	6 cut(s)	71, 397, 463, 472, 1120, 1170
Ksp22I	TGATCA	1 cut(s)	1224
Kzo9I	GATC	3 cut(s)	261, 623, 1224
LmnI	GCTCC	2 cut(s)	1130, 1312
Lsp1109I	GCAGC	3 cut(s)	90, 253, 1240
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	3 cut(s)	321, 591, 1247
MaeIII	GTNAC	5 cut(s)	27, 675, 728, 979, 1144
MalI	GATC	3 cut(s)	263, 625, 1226
MbiI	CCGCTC	2 cut(s)	16, 58
MboI	GATC	3 cut(s)	261, 623, 1224
MboII	GAAGA	5 cut(s)	110, 113, 1195, 1215, 1301
MhlI	GDGCHC	4 cut(s)	38, 739, 1101, 1305
MluCI	AATT	4 cut(s)	495, 627, 965, 1206
MlyI	GAGTC	2 cut(s)	119, 168
MmeI	TCCRAC	5 cut(s)	138, 637, 929, 1108, 1290
MnlI	CCTC	7 cut(s)	51, 138, 224, 478, 542, 812, 1026
Mph1103I	ATGCAT	1 cut(s)	838
MseI	TTAA	6 cut(s)	87, 293, 492, 684, 860, 1041
MslI	CAYNNNNRTG	2 cut(s)	767, 1171
MspA1I	CMGCKG	1 cut(s)	1074
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	3 cut(s)	75, 947, 1064
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	3 cut(s)	75, 947, 1064
MwoI	GCNNNNNNNGC	2 cut(s)	272, 842
NcoI	CCATGG	1 cut(s)	468
NdeI	CATATG	1 cut(s)	1229
NdeII	GATC	3 cut(s)	261, 623, 1224
NlaIII	CATG	6 cut(s)	71, 397, 463, 472, 1120, 1170
NlaIV	GGNNCC	1 cut(s)	1098
NmuCI	GTSAC	3 cut(s)	27, 675, 1144
NsiI	ATGCAT	1 cut(s)	838
NspI	RCATGY	1 cut(s)	463
PagI	TCATGA	1 cut(s)	393
PciI	ACATGT	1 cut(s)	459
PctI	GAATGC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	317, 696, 1035
PinAI	ACCGGT	1 cut(s)	638
PkrI	GCNGC	4 cut(s)	60, 80, 268, 1255
PleI	GAGTC	2 cut(s)	118, 168
PpsI	GAGTC	2 cut(s)	118, 168
PscI	ACATGT	1 cut(s)	459
Psp6I	CCWGG	3 cut(s)	73, 945, 1062
PspEI	GGTNACC	1 cut(s)	675
PspGI	CCWGG	3 cut(s)	73, 945, 1062
PspN4I	GGNNCC	1 cut(s)	1098
PspPI	GGNCC	1 cut(s)	636
PsrI	GAACNNNNNNTAC	2 cut(s)	848, 880
PstI	CTGCAG	1 cut(s)	1258
PvuII	CAGCTG	1 cut(s)	1074
RsaI	GTAC	4 cut(s)	761, 857, 1057, 1273
RsaNI	GTAC	4 cut(s)	760, 856, 1056, 1272
RseI	CAYNNNNRTG	2 cut(s)	767, 1171
SaqAI	TTAA	6 cut(s)	87, 293, 492, 684, 860, 1041
SatI	GCNGC	4 cut(s)	59, 79, 267, 1254
Sau3AI	GATC	3 cut(s)	261, 623, 1224
Sau96I	GGNCC	1 cut(s)	636
SchI	GAGTC	2 cut(s)	119, 168
ScrFI	CCNGG	3 cut(s)	75, 947, 1064
SduI	GDGCHC	4 cut(s)	38, 739, 1101, 1305
SfaNI	GCATC	1 cut(s)	845
SfcI	CTRYAG	2 cut(s)	420, 1254
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	2 cut(s)	767, 1171
SmlI	CTYRAG	1 cut(s)	565
SmoI	CTYRAG	1 cut(s)	565
Sse9I	AATT	4 cut(s)	495, 627, 965, 1206
SsiI	CCGC	3 cut(s)	14, 58, 1094
SspMI	CTAG	3 cut(s)	321, 591, 1247
StyD4I	CCNGG	3 cut(s)	73, 945, 1062
StyI	CCWWGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	550, 734, 786, 877
TaqI	TCGA	2 cut(s)	18, 1201
TasI	AATT	4 cut(s)	495, 627, 965, 1206
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	317, 696, 1035
Tru1I	TTAA	6 cut(s)	87, 293, 492, 684, 860, 1041
Tru9I	TTAA	6 cut(s)	87, 293, 492, 684, 860, 1041
TscAI	CASTG	2 cut(s)	36, 225
TseFI	GTSAC	3 cut(s)	27, 675, 1144
TseI	GCWGC	3 cut(s)	78, 266, 1253
Tsp45I	GTSAC	3 cut(s)	27, 675, 1144
TspDTI	ATGAA	6 cut(s)	382, 410, 505, 653, 785, 802
TspRI	CASTG	2 cut(s)	36, 225
VpaK11BI	GGWCC	1 cut(s)	636
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	1 cut(s)	965
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	3 cut(s)	321, 591, 1247
Zsp2I	ATGCAT	1 cut(s)	838

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.