Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

3455330 .. 3457351

Gene Structure 2022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1051600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGATGCTGATTCTTCAGAAAAGTCATCATCCTTGAGCTTGCCTCTAATCCTTGGTGAGGAGCAACATGAGCAAGCTGGAAGCAAGGTAGAAGAAAAACTAGAGTCGAGCTTTCATCACCAAACTACAGCCACAACCTCCTTCCTCAAAACCTGTTTTAATGGGCTCAATGCACTCTCAGGAGTAGGGATACTGTCAGTTCCTTATGCACTAGCATCAGGAGGATGGCTAAGCTTGATCTTCCTTTTCTTAATCGCGGCTTCAGCCTTCTACTCGGGCTTGTTAATCCAGAGATGCATGGATGTGGATTCTGATATCAGAACTTATCCGGATATAGGTGAGCGCGCATTCGGGAAGAAGGGAAGAATTCTGCTGTCGATTTTCATGAATGTAGAACTCTACTTCGTTGCAACAGGGTTCCTAATTTTAGAAGGAGATAACTTACACAACTTATTTCCCGGCGTGGAATTAGACGTGGCTGGATTAAGAATTGGCGGAGAACAGTGCTTCATAATTGTTGTTGCCCTCATTATTCTGCCAACAGGCACACCACTGAAGTGGAATGGAATCCCTACCGCTGTTAGCTTGTATGCCTTTTGTTACTGCGCACATCCGGTGTTCCCTACCCTCTACACTTCAATGAAAAACAAACGTCAGTTCTCCAATGTTCTTCTCCTATGCTTCATCTTGTGCACCATCTGTTATGCATCAATGGCAGTTTTCGGGTACCTAATGTTTGGATCTACGGTTCAATCACAGATAACATTAAATCTCCCAACTCACAAAATTAGCTCAAAAGTCGCGATATACACCACGCTGGTCAATCCGATATCCAAATATGCTTTGATGGTTACACCAGTTGTAAATGCTGCAAAGAAGAAGTTTCCGAGTCACTACAACAAAAGACTCATCGGCATGTTAGCCAGCACCACCTTGGTGATCAGCACCGTTGTAGTAGCTTTGGCTATTCCATTTTTCGCTTATCTCATGTCACTTGTCGGAGCTTTTCTGAGTGTAACAGCATCGATTATATTGCCGTGCTTTTGCTACCTTAAAATTTCAGGTATTTATCGACGCCTCGGATGTGAGATGTTGATTATAGGGCTTATATTAGTACTGAGTGCTGCAGTTGTTGTATTTGGCACTTACACATCTCTAGTAGAAATAATAGGGCACTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

394

Amino Acids

42.78

Weight (kDa)

8.41

Isoelectric Point (pI)

35.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	45 - 180	1.1e-22	Transmembrane amino acid transporter protein
Aa_trans	PF01490	187 - 385	9.1e-31	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	607
Acc65I	GGTACC	1 cut(s)	726
AccB1I	GGYRCC	1 cut(s)	726
AccII	CGCG	3 cut(s)	257, 345, 803
AccIII	TCCGGA	1 cut(s)	328
AciI	CCGC	3 cut(s)	257, 495, 576
AclWI	GGATC	1 cut(s)	748
AcsI	RAATTY	2 cut(s)	366, 1056
AcuI	CTGAAG	2 cut(s)	246, 575
AcyI	GRCGYC	1 cut(s)	1075
AfaI	GTAC	2 cut(s)	728, 1116
AfiI	CCNNNNNNNGG	2 cut(s)	58, 335
AgsI	TTSAA	2 cut(s)	639, 752
AjiI	CACGTC	1 cut(s)	475
AleI	CACNNNNGTG	2 cut(s)	556, 935
AloI	GAACNNNNNNTCC	2 cut(s)	732, 764
AluBI	AGCT	8 cut(s)	39, 77, 111, 234, 585, 792, 959, 1004
AluI	AGCT	8 cut(s)	39, 77, 111, 234, 585, 792, 959, 1004
Alw21I	GWGCWC	1 cut(s)	695
Alw44I	GTGCAC	1 cut(s)	691
AlwI	GGATC	1 cut(s)	748
Ama87I	CYCGRG	1 cut(s)	274
Aor13HI	TCCGGA	1 cut(s)	328
ApaLI	GTGCAC	1 cut(s)	691
ApeKI	GCWGC	2 cut(s)	869, 1124
ApoI	RAATTY	2 cut(s)	366, 1056
Asp718I	GGTACC	1 cut(s)	726
AspLEI	GCGC	3 cut(s)	345, 347, 608
AsuC2I	CCSGG	1 cut(s)	459
AsuHPI	GGTGA	4 cut(s)	68, 110, 350, 949
AvaI	CYCGRG	1 cut(s)	274
BaeGI	GKGCMC	2 cut(s)	695, 1176
BanI	GGYRCC	1 cut(s)	726
BanII	GRGCYC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	695
BbvI	GCAGC	2 cut(s)	856, 1111
BccI	CCATC	3 cut(s)	219, 704, 841
BceAI	ACGGC	1 cut(s)	1021
BcgI	CGANNNNNNTGC	2 cut(s)	1015, 1049
BciVI	GTATCC	1 cut(s)	183
BclI	TGATCA	1 cut(s)	939
BcnI	CCSGG	1 cut(s)	459
BfaI	CTAG	3 cut(s)	101, 212, 1157
BfmI	CTRYAG	2 cut(s)	126, 1125
BfuI	GTATCC	1 cut(s)	183
BisI	GCNGC	3 cut(s)	258, 870, 1125
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	3 cut(s)	259, 871, 1126
BmcAI	AGTACT	1 cut(s)	1116
Bme1390I	CCNGG	1 cut(s)	459
BmeT110I	CYCGRG	1 cut(s)	274
BmgBI	CACGTC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	419, 728
BmrFI	CCNGG	1 cut(s)	459
BmsI	GCATC	4 cut(s)	224, 284, 716, 1031
BplI	GAGNNNNNCTC	2 cut(s)	28, 60
Bpu1102I	GCTNAGC	1 cut(s)	230
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	459
Bsa29I	ATCGAT	1 cut(s)	1025
BsaHI	GRCGYC	1 cut(s)	1075
BsaJI	CCNNGG	3 cut(s)	52, 933, 1078
BsaWI	WCCGGW	2 cut(s)	328, 613
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 335
Bse1I	ACTGG	1 cut(s)	857
BseAI	TCCGGA	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	1025
BseDI	CCNNGG	3 cut(s)	52, 933, 1078
BseGI	GGATG	6 cut(s)	10, 29, 230, 307, 610, 1088
BseLI	CCNNNNNNNGG	2 cut(s)	58, 335
BseMII	CTCAG	3 cut(s)	192, 1001, 1109
BseNI	ACTGG	1 cut(s)	857
BsePI	GCGCGC	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	2 cut(s)	695, 1176
BseXI	GCAGC	2 cut(s)	856, 1111
Bsh1236I	CGCG	3 cut(s)	257, 345, 803
BshNI	GGYRCC	1 cut(s)	726
BshVI	ATCGAT	1 cut(s)	1025
BsiHKAI	GWGCWC	1 cut(s)	695
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	3 cut(s)	329, 459, 614
BslI	CCNNNNNNNGG	2 cut(s)	58, 335
BsmI	GAATGC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	3 cut(s)	168, 695, 1176
Bsp13I	TCCGGA	1 cut(s)	328
Bsp143I	GATC	3 cut(s)	237, 740, 939
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp68I	TCGCGA	1 cut(s)	803
BspACI	CCGC	3 cut(s)	257, 495, 576
BspCNI	CTCAG	3 cut(s)	191, 1002, 1110
BspDI	ATCGAT	1 cut(s)	1025
BspEI	TCCGGA	1 cut(s)	328
BspFNI	CGCG	3 cut(s)	257, 345, 803
BspHI	TCATGA	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	419, 728
BspMAI	CTGCAG	1 cut(s)	1129
BspPI	GGATC	1 cut(s)	748
BspT107I	GGYRCC	1 cut(s)	726
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	3 cut(s)	52, 933, 1078
BssHII	GCGCGC	1 cut(s)	343
BssMI	GATC	3 cut(s)	237, 740, 939
BssNI	GRCGYC	1 cut(s)	1075
BssT1I	CCWWGG	2 cut(s)	52, 933
Bst4CI	ACNGT	4 cut(s)	195, 504, 748, 949
BstACI	GRCGYC	1 cut(s)	1075
BstC8I	GCNNGC	4 cut(s)	41, 75, 345, 925
BstDEI	CTNAG	4 cut(s)	178, 230, 1010, 1118
BstENI	CCTNNNNNAGG	1 cut(s)	56
BstF5I	GGATG	6 cut(s)	10, 29, 230, 307, 610, 1088
BstFNI	CGCG	3 cut(s)	257, 345, 803
BstHHI	GCGC	3 cut(s)	345, 347, 608
BstKTI	GATC	3 cut(s)	240, 743, 942
BstMBI	GATC	3 cut(s)	237, 740, 939
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 263, 713
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	457
BstSFI	CTRYAG	2 cut(s)	126, 1125
BstSLI	GKGCMC	2 cut(s)	695, 1176
BstUI	CGCG	3 cut(s)	257, 345, 803
BstV1I	GCAGC	2 cut(s)	856, 1111
BstX2I	RGATCY	1 cut(s)	740
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	740
Bsu15I	ATCGAT	1 cut(s)	1025
BsuI	GTATCC	1 cut(s)	183
BsuTUI	ATCGAT	1 cut(s)	1025
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	6 cut(s)	10, 29, 230, 307, 610, 1088
BtsIMutI	CAGTG	2 cut(s)	509, 551
BtuMI	TCGCGA	1 cut(s)	803
Cac8I	GCNNGC	4 cut(s)	41, 75, 345, 925
CciI	TCATGA	1 cut(s)	384
CfoI	GCGC	3 cut(s)	345, 347, 608
ClaI	ATCGAT	1 cut(s)	1025
CseI	GACGC	1 cut(s)	1083
Csp6I	GTAC	2 cut(s)	727, 1115
CviAII	CATG	5 cut(s)	68, 298, 385, 916, 988
CviQI	GTAC	2 cut(s)	727, 1115
DdeI	CTNAG	4 cut(s)	178, 230, 1010, 1118
DpnI	GATC	3 cut(s)	239, 742, 941
DpnII	GATC	3 cut(s)	237, 740, 939
EciI	GGCGGA	1 cut(s)	510
Eco130I	CCWWGG	2 cut(s)	52, 933
Eco24I	GRGCYC	1 cut(s)	168
Eco32I	GATATC	2 cut(s)	316, 831
Eco57I	CTGAAG	2 cut(s)	246, 575
Eco88I	CYCGRG	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	56
EcoRI	GAATTC	1 cut(s)	366
EcoRV	GATATC	2 cut(s)	316, 831
EcoT14I	CCWWGG	2 cut(s)	52, 933
EcoT22I	ATGCAT	2 cut(s)	299, 709
EcoT38I	GRGCYC	1 cut(s)	168
ErhI	CCWWGG	2 cut(s)	52, 933
FaeI	CATG	5 cut(s)	71, 301, 388, 919, 991
FatI	CATG	5 cut(s)	67, 297, 384, 915, 987
FbaI	TGATCA	1 cut(s)	939
Fnu4HI	GCNGC	3 cut(s)	258, 870, 1125
FokI	GGATG	6 cut(s)	16, 17, 237, 314, 597, 1095
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	3 cut(s)	258, 870, 1125
FspBI	CTAG	3 cut(s)	101, 212, 1157
FspI	TGCGCA	1 cut(s)	607
GlaI	GCGC	3 cut(s)	344, 346, 607
GluI	GCNGC	3 cut(s)	258, 870, 1125
HapII	CCGG	3 cut(s)	329, 459, 614
HgaI	GACGC	1 cut(s)	1083
HhaI	GCGC	3 cut(s)	345, 347, 608
Hin1I	GRCGYC	1 cut(s)	1075
Hin1II	CATG	5 cut(s)	71, 301, 388, 919, 991
Hin6I	GCGC	3 cut(s)	343, 345, 606
HinP1I	GCGC	3 cut(s)	343, 345, 606
HindIII	AAGCTT	1 cut(s)	232
HinfI	GANTC	6 cut(s)	11, 104, 308, 567, 889, 906
HpaII	CCGG	3 cut(s)	329, 459, 614
HphI	GGTGA	4 cut(s)	68, 110, 350, 949
Hpy166II	GTNNAC	1 cut(s)	693
Hpy188I	TCNGA	8 cut(s)	19, 313, 320, 828, 888, 1001, 1011, 1082
Hpy188III	TCNNGA	7 cut(s)	180, 219, 289, 329, 352, 385, 802
Hpy8I	GTNNAC	1 cut(s)	693
Hpy99I	CGWCG	1 cut(s)	1077
HpyAV	CCTTC	4 cut(s)	151, 277, 352, 425
HpyCH4III	ACNGT	4 cut(s)	195, 504, 748, 949
HpyCH4IV	ACGT	2 cut(s)	474, 652
HpyCH4V	TGCA	8 cut(s)	173, 209, 297, 410, 693, 707, 872, 1127
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 263, 713
HpyF3I	CTNAG	4 cut(s)	178, 230, 1010, 1118
HpySE526I	ACGT	2 cut(s)	474, 652
Hsp92I	GRCGYC	1 cut(s)	1075
Hsp92II	CATG	5 cut(s)	71, 301, 388, 919, 991
HspAI	GCGC	3 cut(s)	343, 345, 606
Kpn2I	TCCGGA	1 cut(s)	328
KpnI	GGTACC	1 cut(s)	730
Ksp22I	TGATCA	1 cut(s)	939
Kzo9I	GATC	3 cut(s)	237, 740, 939
LmnI	GCTCC	2 cut(s)	61, 1001
Lsp1109I	GCAGC	2 cut(s)	856, 1111
LweI	GCATC	4 cut(s)	224, 284, 716, 1031
MaeI	CTAG	3 cut(s)	101, 212, 1157
MaeII	ACGT	2 cut(s)	474, 652
MaeIII	GTNAC	5 cut(s)	599, 850, 890, 990, 1015
MalI	GATC	3 cut(s)	239, 742, 941
MboI	GATC	3 cut(s)	237, 740, 939
MboII	GAAGA	7 cut(s)	6, 104, 232, 367, 375, 662, 889
MflI	RGATCY	1 cut(s)	740
MhlI	GDGCHC	3 cut(s)	168, 695, 1176
MluCI	AATT	7 cut(s)	366, 423, 467, 489, 513, 786, 1056
MlyI	GAGTC	3 cut(s)	113, 898, 900
MmeI	TCCRAC	1 cut(s)	979
MnlI	CCTC	8 cut(s)	52, 54, 148, 155, 215, 536, 638, 1088
Mph1103I	ATGCAT	2 cut(s)	299, 709
MroI	TCCGGA	1 cut(s)	328
MseI	TTAA	6 cut(s)	159, 251, 284, 485, 767, 1053
MslI	CAYNNNNRTG	5 cut(s)	302, 556, 638, 914, 935
MspA1I	CMGCKG	1 cut(s)	578
MspI	CCGG	3 cut(s)	329, 459, 614
MspR9I	CCNGG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	347
MvnI	CGCG	3 cut(s)	257, 345, 803
MwoI	GCNNNNNNNGC	3 cut(s)	70, 263, 713
NciI	CCSGG	1 cut(s)	459
NdeII	GATC	3 cut(s)	237, 740, 939
NlaIII	CATG	5 cut(s)	71, 301, 388, 919, 991
NlaIV	GGNNCC	2 cut(s)	419, 728
NmuCI	GTSAC	2 cut(s)	890, 990
NruI	TCGCGA	1 cut(s)	803
NsbI	TGCGCA	1 cut(s)	607
NsiI	ATGCAT	2 cut(s)	299, 709
NspI	RCATGY	1 cut(s)	919
OliI	CACNNNNGTG	2 cut(s)	556, 935
PagI	TCATGA	1 cut(s)	384
PauI	GCGCGC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	347
PfeI	GAWTC	3 cut(s)	11, 308, 567
PkrI	GCNGC	3 cut(s)	259, 871, 1126
PleI	GAGTC	3 cut(s)	112, 897, 900
PpsI	GAGTC	3 cut(s)	112, 897, 900
PspN4I	GGNNCC	2 cut(s)	419, 728
PstI	CTGCAG	1 cut(s)	1129
PsuI	RGATCY	1 cut(s)	740
PteI	GCGCGC	1 cut(s)	343
RruI	TCGCGA	1 cut(s)	803
RsaI	GTAC	2 cut(s)	728, 1116
RsaNI	GTAC	2 cut(s)	727, 1115
RseI	CAYNNNNRTG	5 cut(s)	302, 556, 638, 914, 935
SaqAI	TTAA	6 cut(s)	159, 251, 284, 485, 767, 1053
SatI	GCNGC	3 cut(s)	258, 870, 1125
Sau3AI	GATC	3 cut(s)	237, 740, 939
ScaI	AGTACT	1 cut(s)	1116
SchI	GAGTC	3 cut(s)	113, 898, 900
ScrFI	CCNGG	1 cut(s)	459
SduI	GDGCHC	3 cut(s)	168, 695, 1176
SfaNI	GCATC	4 cut(s)	224, 284, 716, 1031
SfcI	CTRYAG	2 cut(s)	126, 1125
SmiMI	CAYNNNNRTG	5 cut(s)	302, 556, 638, 914, 935
SmlI	CTYRAG	1 cut(s)	34
SmoI	CTYRAG	1 cut(s)	34
Sse9I	AATT	7 cut(s)	366, 423, 467, 489, 513, 786, 1056
SsiI	CCGC	3 cut(s)	257, 495, 576
SspMI	CTAG	3 cut(s)	101, 212, 1157
StyD4I	CCNGG	1 cut(s)	457
StyI	CCWWGG	2 cut(s)	52, 933
TaaI	ACNGT	4 cut(s)	195, 504, 748, 949
TaiI	ACGT	2 cut(s)	477, 655
TaqI	TCGA	4 cut(s)	107, 377, 1025, 1072
TasI	AATT	7 cut(s)	366, 423, 467, 489, 513, 786, 1056
TatI	WGTACW	1 cut(s)	1114
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	3 cut(s)	11, 308, 567
Tru1I	TTAA	6 cut(s)	159, 251, 284, 485, 767, 1053
Tru9I	TTAA	6 cut(s)	159, 251, 284, 485, 767, 1053
TscAI	CASTG	2 cut(s)	509, 558
TseFI	GTSAC	2 cut(s)	890, 990
TseI	GCWGC	2 cut(s)	869, 1124
Tsp45I	GTSAC	2 cut(s)	890, 990
TspDTI	ATGAA	6 cut(s)	104, 373, 401, 499, 656, 673
TspRI	CASTG	2 cut(s)	509, 558
VneI	GTGCAC	1 cut(s)	691
XagI	CCTNNNNNAGG	1 cut(s)	56
XapI	RAATTY	2 cut(s)	366, 1056
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	931
XspI	CTAG	3 cut(s)	101, 212, 1157
ZrmI	AGTACT	1 cut(s)	1116
Zsp2I	ATGCAT	2 cut(s)	299, 709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.