pycom17g04680

vacuolar amino acid transporter

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
3228333 .. 3230235
1903 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g04680.2

Sequence Viewer

Length: 1305 bp
ATGGATGCTGATCCTTTAGAAACATCATCATCCTTGAGCTTGCCTCTTATTCTCGGTGAGGGGCAGCATGAGCAAGCTGGAAGCAAGGTAGTAGAAGAAGTAGAGTCAAGCTTTCATCACCAAACTACAGCCACAACCTCCTTCCTCAAAACCTGTTTCAATGGACTCAATGCACTCTCAGGGGTAGGGATACTGTCAGTTCCTTATGCACTAGCATCAGGAGGATGGCTAAGCTTGATCTTCCTTTTCTTAATTGCGGCTGCAGCCTTCTACTCGGGTTTGTTAATCCAGAGATGCATGGATGTGGATTCTGATATAAGAACATATCCGGACATAGGCGAACGTGCATTCGGGAAGAAGGGAAGAATACTGCTGTCGATTGTCATGAATGTAGAACTCTACTTGGTTGCAACAGGGTTCCTAATTTTGGAAGGAGATAACTTAAACAATTTATTTCCCGGCGTAGAATTAGACGTGGCCGGATTAAGAATTGGCGGAGAACAGTGCTTTATAATTGTTGTTGCCCTCATTATTCTGCCAACAGTTTGGTTAGATAACCTGAGCCTTCTTTCTTACGTATCTGCAAGTGGAGTTTTAGCCTCTGCCATCATCCTCGGTTCGATTTTGTGGACTGGTGCTTTTGAAGGAATTGGATTTCATGAAGAGGGCACACCACTGAAGTGGAATGGAATCCCTACGGCTATTAGCTTGTACGCGTTTTGTTACTGCGCGCATCCGGTGTTCCCGACCCTCTACACTTCAATGAAAAACAAACGTCAGTTCTCCAATGTTCTTCTCCTATGCTTCATCTTGTGCACCATGTGTTATGCATCAATGGCAGTTTTCGGTTACCTAATGTTTGGATCGATCGTTCAATCACAAATAACTTTAAATCTCCCAACTCACAAAATCAGCTCAAAAGTCGCGATATACACCACGCTGGTCAATCCCATATCCAAATATGCTTTGATGGTTACACCAATTGTGAATGCTGCAAAGAAGAGGTTCCCGAGTCACTACAGAAAGAGACTCATCGGCATGTTAGCCAGCACCACCTTGGTGACAAGCACCGTTATAGTAGCTTTGGCTATACCATTTTTCGCTTATCTCATGTCACTCGTCGGAGCATTTTTGAGTGTAACAGCTTCAATTATATTGCCGTGCTTCTGCTACCTTAAAATTTCAGGTATTTATCGACGCCTTGGATTTGAGATGTTGATTATAGGGCTTATATTACTACTGAGTGCTGCAGCAGTTGTATTTGGCACTTACACATCTTTAGTAGAAATAATAGGGCACTTGTAA

Protein Analysis

435

Amino Acids

47.03

Weight (kDa)

7.05

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 512
AccII CGCG 3 cut(s) 716, 731, 926
AccIII TCCGGA 1 cut(s) 328
AciI CCGC 2 cut(s) 257, 495
AclWI GGATC 2 cut(s) 5, 871
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 1 cut(s) 1179
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 1198
AdeI CACNNNGTG 1 cut(s) 822
AfaI GTAC 1 cut(s) 713
AfiI CCNNNNNNNGG 2 cut(s) 335, 427
AflIII ACRYGT 1 cut(s) 714
AgsI TTSAA 5 cut(s) 160, 644, 762, 875, 1149
AjiI CACGTC 1 cut(s) 475
AleI CACNNNNGTG 2 cut(s) 679, 1058
AloI GAACNNNNNNTCC 2 cut(s) 855, 887
AluBI AGCT 8 cut(s) 39, 77, 111, 234, 708, 915, 1082, 1145
AluI AGCT 8 cut(s) 39, 77, 111, 234, 708, 915, 1082, 1145
Alw21I GWGCWC 1 cut(s) 818
Alw26I GTCTC 1 cut(s) 1021
Alw44I GTGCAC 1 cut(s) 814
AlwI GGATC 2 cut(s) 5, 871
Ama87I CYCGRG 2 cut(s) 274, 1009
Aor13HI TCCGGA 1 cut(s) 328
AoxI GGCC 1 cut(s) 477
ApaLI GTGCAC 1 cut(s) 814
ApeKI GCWGC 6 cut(s) 64, 260, 263, 992, 1247, 1250
ApoI RAATTY 1 cut(s) 1179
Asp700I GAANNNNTTC 1 cut(s) 1004
AspLEI GCGC 2 cut(s) 731, 733
AsuC2I CCSGG 1 cut(s) 459
AsuHPI GGTGA 3 cut(s) 68, 110, 1072
AvaI CYCGRG 2 cut(s) 274, 1009
BaeGI GKGCMC 3 cut(s) 671, 818, 1299
Bbv12I GWGCWC 1 cut(s) 818
BbvI GCAGC 6 cut(s) 76, 247, 275, 979, 1234, 1262
BccI CCATC 3 cut(s) 219, 614, 964
BceAI ACGGC 2 cut(s) 714, 1144
BciVI GTATCC 1 cut(s) 183
BcnI CCSGG 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 1021
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 4 cut(s) 126, 261, 1018, 1248
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 7 cut(s) 65, 258, 261, 264, 993, 1248, 1251
BlpI GCTNAGC 1 cut(s) 230
BlsI GCNGC 7 cut(s) 66, 259, 262, 265, 994, 1249, 1252
Bme1390I CCNGG 1 cut(s) 459
BmeT110I CYCGRG 2 cut(s) 274, 1009
BmgBI CACGTC 1 cut(s) 475
BmiI GGNNCC 2 cut(s) 419, 1007
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 4 cut(s) 224, 284, 742, 839
BplI GAGNNNNNCTC 2 cut(s) 28, 60
Bpu10I CCTNAGC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 230
BpuEI CTTGAG 1 cut(s) 55
BpuMI CCSGG 1 cut(s) 459
Bsa29I ATCGAT 1 cut(s) 866
BsaAI YACGTR 1 cut(s) 577
BsaBI GATNNNNATC 1 cut(s) 9
BsaHI GRCGYC 1 cut(s) 1198
BsaJI CCNNGG 3 cut(s) 613, 1056, 1201
BsaWI WCCGGW 2 cut(s) 328, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 335, 427
Bse1I ACTGG 1 cut(s) 637
Bse8I GATNNNNATC 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 328
BseCI ATCGAT 1 cut(s) 866
BseDI CCNNGG 3 cut(s) 613, 1056, 1201
BseGI GGATG 6 cut(s) 10, 29, 230, 307, 609, 733
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 335, 427
BseMII CTCAG 3 cut(s) 192, 551, 1232
BseNI ACTGG 1 cut(s) 637
BsePI GCGCGC 1 cut(s) 729
BseSI GKGCMC 3 cut(s) 671, 818, 1299
BseXI GCAGC 6 cut(s) 76, 247, 275, 979, 1234, 1262
Bsh1236I CGCG 3 cut(s) 716, 731, 926
Bsh1285I CGRYCG 1 cut(s) 870
BshFI GGCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 866
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 818
BsiHKCI CYCGRG 2 cut(s) 274, 1009
BsiSI CCGG 4 cut(s) 329, 459, 480, 737
BslI CCNNNNNNNGG 2 cut(s) 335, 427
BsmAI GTCTC 1 cut(s) 1021
BsmI GAATGC 2 cut(s) 347, 994
BsnI GGCC 1 cut(s) 479
BsoBI CYCGRG 2 cut(s) 274, 1009
Bsp1286I GDGCHC 3 cut(s) 671, 818, 1299
Bsp13I TCCGGA 1 cut(s) 328
Bsp143I GATC 4 cut(s) 10, 237, 863, 867
Bsp1720I GCTNAGC 1 cut(s) 230
Bsp68I TCGCGA 1 cut(s) 926
BspACI CCGC 2 cut(s) 257, 495
BspANI GGCC 1 cut(s) 479
BspCNI CTCAG 3 cut(s) 191, 552, 1233
BspDI ATCGAT 1 cut(s) 866
BspEI TCCGGA 1 cut(s) 328
BspFNI CGCG 3 cut(s) 716, 731, 926
BspHI TCATGA 2 cut(s) 384, 658
BspLI GGNNCC 2 cut(s) 419, 1007
BspMAI CTGCAG 2 cut(s) 265, 1252
BspPI GGATC 2 cut(s) 5, 871
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 3 cut(s) 613, 1056, 1201
BssHII GCGCGC 1 cut(s) 729
BssMI GATC 4 cut(s) 10, 237, 863, 867
BssNI GRCGYC 1 cut(s) 1198
BssT1I CCWWGG 2 cut(s) 1056, 1201
Bst4CI ACNGT 4 cut(s) 195, 504, 544, 1072
Bst6I CTCTTC 2 cut(s) 657, 995
BstACI GRCGYC 1 cut(s) 1198
BstBAI YACGTR 1 cut(s) 577
BstC8I GCNNGC 4 cut(s) 41, 75, 731, 1048
BstDEI CTNAG 4 cut(s) 178, 230, 560, 1241
BstEII GGTNACC 1 cut(s) 848
BstF5I GGATG 6 cut(s) 10, 29, 230, 307, 609, 733
BstFNI CGCG 3 cut(s) 716, 731, 926
BstHHI GCGC 2 cut(s) 731, 733
BstKTI GATC 4 cut(s) 13, 240, 866, 870
BstMAI GTCTC 1 cut(s) 1021
BstMBI GATC 4 cut(s) 10, 237, 863, 867
BstMCI CGRYCG 1 cut(s) 870
BstMWI GCNNNNNNNGC 3 cut(s) 70, 263, 836
BstNSI RCATGY 1 cut(s) 1042
BstPI GGTNACC 1 cut(s) 848
BstSCI CCNGG 1 cut(s) 457
BstSFI CTRYAG 4 cut(s) 126, 261, 1018, 1248
BstSLI GKGCMC 3 cut(s) 671, 818, 1299
BstSNI TACGTA 1 cut(s) 577
BstUI CGCG 3 cut(s) 716, 731, 926
BstV1I GCAGC 6 cut(s) 76, 247, 275, 979, 1234, 1262
BstXI CCANNNNNNTGG 2 cut(s) 546, 681
Bsu15I ATCGAT 1 cut(s) 866
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 479
BsuTUI ATCGAT 1 cut(s) 866
BtrI CACGTC 1 cut(s) 475
BtsCI GGATG 6 cut(s) 10, 29, 230, 307, 609, 733
BtsIMutI CAGTG 2 cut(s) 509, 674
BtuMI TCGCGA 1 cut(s) 926
Cac8I GCNNGC 4 cut(s) 41, 75, 731, 1048
CciI TCATGA 2 cut(s) 384, 658
CfoI GCGC 2 cut(s) 731, 733
ClaI ATCGAT 1 cut(s) 866
CseI GACGC 1 cut(s) 1206
Csp6I GTAC 1 cut(s) 712
CviAII CATG 7 cut(s) 68, 298, 385, 659, 820, 1039, 1111
CviQI GTAC 1 cut(s) 712
DdeI CTNAG 4 cut(s) 178, 230, 560, 1241
DpnI GATC 4 cut(s) 12, 239, 865, 869
DpnII GATC 4 cut(s) 10, 237, 863, 867
DraI TTTAAA 1 cut(s) 891
DraIII CACNNNGTG 1 cut(s) 822
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 2 cut(s) 657, 995
EarI CTCTTC 2 cut(s) 657, 995
EciI GGCGGA 1 cut(s) 510
Eco105I TACGTA 1 cut(s) 577
Eco130I CCWWGG 2 cut(s) 1056, 1201
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 2 cut(s) 274, 1009
Eco91I GGTNACC 1 cut(s) 848
EcoO65I GGTNACC 1 cut(s) 848
EcoT14I CCWWGG 2 cut(s) 1056, 1201
EcoT22I ATGCAT 2 cut(s) 299, 832
ErhI CCWWGG 2 cut(s) 1056, 1201
FaeI CATG 7 cut(s) 71, 301, 388, 662, 823, 1042, 1114
FatI CATG 7 cut(s) 67, 297, 384, 658, 819, 1038, 1110
Fnu4HI GCNGC 7 cut(s) 65, 258, 261, 264, 993, 1248, 1251
FokI GGATG 6 cut(s) 16, 17, 237, 314, 596, 720
Fsp4HI GCNGC 7 cut(s) 65, 258, 261, 264, 993, 1248, 1251
FspBI CTAG 1 cut(s) 212
GlaI GCGC 2 cut(s) 730, 732
GluI GCNGC 7 cut(s) 65, 258, 261, 264, 993, 1248, 1251
HaeIII GGCC 1 cut(s) 479
HapII CCGG 4 cut(s) 329, 459, 480, 737
HgaI GACGC 1 cut(s) 1206
HhaI GCGC 2 cut(s) 731, 733
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 7 cut(s) 71, 301, 388, 662, 823, 1042, 1114
Hin6I GCGC 2 cut(s) 729, 731
HinP1I GCGC 2 cut(s) 729, 731
HindIII AAGCTT 2 cut(s) 109, 232
HinfI GANTC 6 cut(s) 104, 165, 308, 690, 1012, 1029
HpaII CCGG 4 cut(s) 329, 459, 480, 737
HphI GGTGA 3 cut(s) 68, 110, 1072
Hpy166II GTNNAC 2 cut(s) 630, 816
Hpy188I TCNGA 2 cut(s) 313, 1124
Hpy188III TCNNGA 9 cut(s) 219, 289, 329, 352, 385, 659, 745, 925, 1009
Hpy8I GTNNAC 2 cut(s) 630, 816
Hpy99I CGWCG 2 cut(s) 1124, 1200
HpyAV CCTTC 6 cut(s) 151, 277, 352, 425, 575, 638
HpyCH4III ACNGT 4 cut(s) 195, 504, 544, 1072
HpyCH4IV ACGT 4 cut(s) 343, 474, 576, 775
HpyF10VI GCNNNNNNNGC 3 cut(s) 70, 263, 836
HpyF3I CTNAG 4 cut(s) 178, 230, 560, 1241
HpySE526I ACGT 4 cut(s) 343, 474, 576, 775
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 7 cut(s) 71, 301, 388, 662, 823, 1042, 1114
HspAI GCGC 2 cut(s) 729, 731
Kpn2I TCCGGA 1 cut(s) 328
Kzo9I GATC 4 cut(s) 10, 237, 863, 867
LmnI GCTCC 1 cut(s) 1124
Lsp1109I GCAGC 6 cut(s) 76, 247, 275, 979, 1234, 1262
LweI GCATC 4 cut(s) 224, 284, 742, 839
MaeI CTAG 1 cut(s) 212
MaeII ACGT 4 cut(s) 343, 474, 576, 775
MaeIII GTNAC 7 cut(s) 722, 848, 973, 1013, 1060, 1113, 1138
MalI GATC 4 cut(s) 12, 239, 865, 869
MboI GATC 4 cut(s) 10, 237, 863, 867
MboII GAAGA 7 cut(s) 107, 232, 367, 375, 674, 785, 1012
MfeI CAATTG 1 cut(s) 981
MhlI GDGCHC 3 cut(s) 671, 818, 1299
MluI ACGCGT 1 cut(s) 714
MlyI GAGTC 4 cut(s) 113, 159, 1021, 1023
MmeI TCCRAC 1 cut(s) 1102
Mph1103I ATGCAT 2 cut(s) 299, 832
MroI TCCGGA 1 cut(s) 328
MroXI GAANNNNTTC 1 cut(s) 1004
MseI TTAA 6 cut(s) 251, 284, 443, 485, 890, 1176
MslI CAYNNNNRTG 5 cut(s) 302, 679, 761, 1037, 1058
MspI CCGG 4 cut(s) 329, 459, 480, 737
MspR9I CCNGG 1 cut(s) 459
MunI CAATTG 1 cut(s) 981
Mva1269I GAATGC 2 cut(s) 347, 994
MvnI CGCG 3 cut(s) 716, 731, 926
MwoI GCNNNNNNNGC 3 cut(s) 70, 263, 836
NciI CCSGG 1 cut(s) 459
NdeII GATC 4 cut(s) 10, 237, 863, 867
NlaIII CATG 7 cut(s) 71, 301, 388, 662, 823, 1042, 1114
NlaIV GGNNCC 2 cut(s) 419, 1007
NmuCI GTSAC 3 cut(s) 1013, 1060, 1113
NruI TCGCGA 1 cut(s) 926
NsiI ATGCAT 2 cut(s) 299, 832
NspI RCATGY 1 cut(s) 1042
OliI CACNNNNGTG 2 cut(s) 679, 1058
PagI TCATGA 2 cut(s) 384, 658
PauI GCGCGC 1 cut(s) 729
PctI GAATGC 2 cut(s) 347, 994
PdmI GAANNNNTTC 1 cut(s) 1004
PfeI GAWTC 2 cut(s) 308, 690
PkrI GCNGC 7 cut(s) 66, 259, 262, 265, 994, 1249, 1252
Ple19I CGATCG 1 cut(s) 870
PleI GAGTC 4 cut(s) 112, 159, 1020, 1023
PpsI GAGTC 4 cut(s) 112, 159, 1020, 1023
Ppu21I YACGTR 1 cut(s) 577
PsiI TTATAA 1 cut(s) 512
PspEI GGTNACC 1 cut(s) 848
PspN4I GGNNCC 2 cut(s) 419, 1007
PstI CTGCAG 2 cut(s) 265, 1252
PteI GCGCGC 1 cut(s) 729
PvuI CGATCG 1 cut(s) 870
RruI TCGCGA 1 cut(s) 926
RsaI GTAC 1 cut(s) 713
RsaNI GTAC 1 cut(s) 712
RseI CAYNNNNRTG 5 cut(s) 302, 679, 761, 1037, 1058
SaqAI TTAA 6 cut(s) 251, 284, 443, 485, 890, 1176
SatI GCNGC 7 cut(s) 65, 258, 261, 264, 993, 1248, 1251
Sau3AI GATC 4 cut(s) 10, 237, 863, 867
SchI GAGTC 4 cut(s) 113, 159, 1021, 1023
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 3 cut(s) 671, 818, 1299
SfaNI GCATC 4 cut(s) 224, 284, 742, 839
SfcI CTRYAG 4 cut(s) 126, 261, 1018, 1248
SmiMI CAYNNNNRTG 5 cut(s) 302, 679, 761, 1037, 1058
SmlI CTYRAG 1 cut(s) 34
SmoI CTYRAG 1 cut(s) 34
SnaBI TACGTA 1 cut(s) 577
SsiI CCGC 2 cut(s) 257, 495
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 457
StyI CCWWGG 2 cut(s) 1056, 1201
TaaI ACNGT 4 cut(s) 195, 504, 544, 1072
TaiI ACGT 4 cut(s) 346, 477, 579, 778
TaqI TCGA 4 cut(s) 377, 620, 866, 1195
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 2 cut(s) 308, 690
Tru1I TTAA 6 cut(s) 251, 284, 443, 485, 890, 1176
Tru9I TTAA 6 cut(s) 251, 284, 443, 485, 890, 1176
TscAI CASTG 2 cut(s) 509, 681
TseFI GTSAC 3 cut(s) 1013, 1060, 1113
TseI GCWGC 6 cut(s) 64, 260, 263, 992, 1247, 1250
Tsp45I GTSAC 3 cut(s) 1013, 1060, 1113
TspDTI ATGAA 6 cut(s) 104, 401, 647, 675, 779, 796
TspRI CASTG 2 cut(s) 509, 681
VneI GTGCAC 1 cut(s) 814
XapI RAATTY 1 cut(s) 1179
XceI RCATGY 1 cut(s) 1042
XcmI CCANNNNNNNNNTGG 1 cut(s) 1054
XmnI GAANNNNTTC 1 cut(s) 1004
XspI CTAG 1 cut(s) 212
Zsp2I ATGCAT 2 cut(s) 299, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.