Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004035

Physical Location & Seq

Genomic Coordinates Forward (+)

29229029 .. 29231222

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1243600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGCTAAATTTACAACGTCAAACAGCTCTCGAAGCCCTCTCTCTCTCTCTCTCTCCAATGGATGATGATGCGCATGCGTCCTTGACCTCGCCCCTTGTGTTGAGCGGGAGGGACGACGAAAGATGCGAACCACCAGAAGAGGCAGCAAACTGCGATCACCAAATTACTACAAACACAACTACGTCTTTTCTGAAAACATTTTTCAATGGTCTCAATGCCCTCTCAGGAATTGGGATACTGTCAGTTCCTTATGCGCTAGCATCAGGAGGATGGCTAAGCTTGATACTTCTTTTTGTTACTGCTGCTGCTGCATTTTACTCAGGGTTGTTAATGCAAAGAAGCATGGACGTGGATACGAGTATAAAAACTTATCCCGACATAGGGGAACAGGCATTTGGGAAAACAGGAAGAATCGTGTTGTCGATTTTCATGAACATAGAACTCTACTTAGTTGCAACAGCTTTCCTAATCATAGAGGGTGATAACTTGCACAGCTTATTTCCAAACATGGATTTGCAGTTGGCTGCTTCAGGGTTCCCAGTGAGTGGGAAACAATGCTTTGTTATGATCGCTGGAATTGTTGTAATGCCGACTGTGTGGTTAGATAACCTGAGTCTTCTTTCTTATGTATCGGCAACTGGGGTTTTTGCCTCTGCTATCATACTCGGCTCGATTTTGTGGGCTGGCGCTTTTGATGGAATTGGATTTCACCACGAGGGATCTGTACCACTTAATTGGAATGGAATCCCTACAGCTGTTAGCTTGTATGTCCTTTGTTATTGCGCGCATCCCGTGTTTCCTACCCTCTACACATCAATGACAAACAAACGTCAGTTTTCAAATGTCCTCCTCCTGAGCTTTATCGTATGCACTGCGAGTTATGCATCAATGGCAGTTTTAGGGTACTTAATGTTCGGGTCAAGGGTTGAGTCCCAGATAACTCTAAACCTTCCAACTCAAAAACTTAGCTCAAAACTTGCAATATGCACCATTCTTCTCAATCCACTGTCCAAATATGCACTGATGGTTACACCAATTCTAAATGCAGCGAAAAATCGGTTTCCTGGTCACCACAACAATAAGATACCTTTAAGCCTATTACTGAGTACTGCCTTGGTAATCAGCAGTGTGACAGTAGCTTTGGCTTTGCCCTTTTTTGGGTATCTCATGTCACTGGTTGGAGCATTTTTTAGCGTCATGGCTTCGCTTATAATACCATGCGTTTGCTACCTAAAGATTTCGGGTACTTATCGAAAGATCGGATGCGAGATGGTGATTGTTTGGTGTATAATTTTAATCGGAGTTGTGGTCGTGATATTTGGTACTTACACGTCTCTATTACAAATTGTACAGCGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0022857 GO:0034220 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

454

Amino Acids

48.98

Weight (kDa)

6.43

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	60 - 445	6.3e-60	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	76 - 279	6.5e-06	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28960 AT3G28960 AT3G28960 AT3G28960 AT3G28960
fragaria_vesca	FvH4_6g48490 FvH4_6g48490 FvH4_6g48490
malus_domestica	MD00G1130600.v1.1 MD09G1051600.v1.1 MD17G1243600.v1.1
prunus_persica	Prupe.3G152900_v2.0.a1 Prupe.3G153500_v2.0.a1 Prupe.3G157700_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1 Prupe.3G267100_v2.0.a1
pyrus_communis	pycom111g04290 pycom17g04650 pycom17g04680 pycom17g24620
rosa_chinensis	RchiOBHm_Chr2g0168381
rosa_laevigata	RLG00000021773
rosa_roxburghii	Rroxscaffold_2G00083100
rosa_rugosa	Rorug02G0533400.1 Rorug02G0533500.1 Rorug02G0533600
rosa_samantha	Rh2AG602700 Rh2BG615900
rosa_wichuraiana	Rw2G050010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1211
Acc16I	TGCGCA	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccBSI	CCGCTC	1 cut(s)	105
AccII	CGCG	1 cut(s)	785
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	1 cut(s)	727
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	513
AfaI	GTAC	6 cut(s)	726, 905, 1108, 1246, 1324, 1350
AfiI	CCNNNNNNNGG	5 cut(s)	380, 381, 545, 1157, 1158
AflIII	ACRYGT	1 cut(s)	1329
AgsI	TTSAA	2 cut(s)	205, 840
AjiI	CACGTC	2 cut(s)	349, 1332
AjnI	CCWGG	1 cut(s)	1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	378, 410
AluBI	AGCT	9 cut(s)	26, 279, 461, 495, 755, 762, 858, 969, 1139
AluI	AGCT	9 cut(s)	26, 279, 461, 495, 755, 762, 858, 969, 1139
Alw26I	GTCTC	2 cut(s)	215, 1338
AlwI	GGATC	1 cut(s)	727
ApeKI	GCWGC	6 cut(s)	143, 302, 305, 308, 524, 1046
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	1123, 1155
AspLEI	GCGC	5 cut(s)	73, 256, 689, 785, 787
AsuHPI	GGTGA	5 cut(s)	149, 491, 701, 1061, 1285
AsuNHI	GCTAGC	1 cut(s)	256
BauI	CACGAG	1 cut(s)	713
BbsI	GAAGAC	1 cut(s)	608
BbvI	GCAGC	6 cut(s)	155, 289, 292, 295, 511, 1058
BccI	CCATC	4 cut(s)	264, 689, 1018, 1264
BciT130I	CCWGG	1 cut(s)	1065
BciVI	GTATCC	2 cut(s)	228, 346
BcoDI	GTCTC	2 cut(s)	215, 1338
BfaI	CTAG	1 cut(s)	257
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	690
BfuI	GTATCC	2 cut(s)	228, 346
BisI	GCNGC	6 cut(s)	144, 303, 306, 309, 525, 1047
BlpI	GCTNAGC	1 cut(s)	275
BlsI	GCNGC	6 cut(s)	145, 304, 307, 310, 526, 1048
BmcAI	AGTACT	1 cut(s)	1108
Bme1390I	CCNGG	1 cut(s)	1065
BmgBI	CACGTC	2 cut(s)	349, 1332
BmiI	GGNNCC	1 cut(s)	536
BmrFI	CCNGG	1 cut(s)	1065
BmrI	ACTGGG	2 cut(s)	533, 648
BmsI	GCATC	6 cut(s)	58, 113, 269, 796, 893, 1253
BmtI	GCTAGC	1 cut(s)	260
BmuI	ACTGGG	2 cut(s)	533, 648
BpiI	GAAGAC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	854
Bpu1102I	GCTNAGC	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	1113
BsaXI	ACNNNNNCTCC	2 cut(s)	1293, 1323
Bsc4I	CCNNNNNNNGG	5 cut(s)	380, 381, 545, 1157, 1158
Bse1I	ACTGG	3 cut(s)	539, 643, 1179
BseBI	CCWGG	1 cut(s)	1065
BseDI	CCNNGG	1 cut(s)	1113
BseGI	GGATG	4 cut(s)	67, 275, 787, 1268
BseLI	CCNNNNNNNGG	5 cut(s)	380, 381, 545, 1157, 1158
BseMII	CTCAG	5 cut(s)	237, 333, 602, 845, 1094
BseNI	ACTGG	3 cut(s)	539, 643, 1179
BsePI	GCGCGC	1 cut(s)	783
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	6 cut(s)	155, 289, 292, 295, 511, 1058
Bsh1236I	CGCG	1 cut(s)	785
BslFI	GGGAC	2 cut(s)	125, 916
BslI	CCNNNNNNNGG	5 cut(s)	380, 381, 545, 1157, 1158
BsmAI	GTCTC	2 cut(s)	215, 1338
BsmBI	CGTCTC	1 cut(s)	1338
BsmFI	GGGAC	2 cut(s)	125, 916
Bso31I	GGTCTC	1 cut(s)	215
Bsp1407I	TGTACA	1 cut(s)	1348
Bsp143I	GATC	4 cut(s)	154, 567, 719, 1257
Bsp1720I	GCTNAGC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	105
BspCNI	CTCAG	5 cut(s)	236, 332, 603, 846, 1095
BspFNI	CGCG	1 cut(s)	785
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	1 cut(s)	536
BspOI	GCTAGC	1 cut(s)	260
BspPI	GGATC	1 cut(s)	727
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	1348
BsrI	ACTGG	3 cut(s)	539, 643, 1179
BssECI	CCNNGG	1 cut(s)	1113
BssHII	GCGCGC	1 cut(s)	783
BssMI	GATC	4 cut(s)	154, 567, 719, 1257
BssSI	CACGAG	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	1113
Bst2BI	CACGAG	1 cut(s)	713
Bst2UI	CCWGG	1 cut(s)	1065
Bst4CI	ACNGT	4 cut(s)	240, 595, 1008, 1135
Bst6I	CTCTTC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	1348
BstC8I	GCNNGC	4 cut(s)	75, 258, 685, 785
BstDEI	CTNAG	8 cut(s)	223, 275, 319, 448, 611, 854, 965, 1103
BstEII	GGTNACC	1 cut(s)	1067
BstF5I	GGATG	4 cut(s)	67, 275, 787, 1268
BstFNI	CGCG	1 cut(s)	785
BstH2I	RGCGCY	1 cut(s)	690
BstHHI	GCGC	5 cut(s)	73, 256, 689, 785, 787
BstKTI	GATC	4 cut(s)	157, 570, 722, 1260
BstMAI	GTCTC	2 cut(s)	215, 1338
BstMBI	GATC	4 cut(s)	154, 567, 719, 1257
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 308, 881, 890
BstNI	CCWGG	1 cut(s)	1065
BstNSI	RCATGY	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	1067
BstSCI	CCNGG	1 cut(s)	1063
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	1 cut(s)	785
BstV1I	GCAGC	6 cut(s)	155, 289, 292, 295, 511, 1058
BstV2I	GAAGAC	1 cut(s)	608
BstX2I	RGATCY	1 cut(s)	719
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	719
BsuI	GTATCC	2 cut(s)	228, 346
BtrI	CACGTC	2 cut(s)	349, 1332
BtsCI	GGATG	4 cut(s)	67, 275, 787, 1268
BtsI	GCAGTG	2 cut(s)	870, 1132
BtsIMutI	CAGTG	6 cut(s)	546, 870, 1004, 1019, 1132, 1172
Cac8I	GCNNGC	4 cut(s)	75, 258, 685, 785
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	5 cut(s)	73, 256, 689, 785, 787
CseI	GACGC	2 cut(s)	66, 1183
Csp6I	GTAC	6 cut(s)	725, 904, 1107, 1245, 1323, 1349
CviAII	CATG	7 cut(s)	74, 343, 430, 508, 1168, 1198, 1218
CviQI	GTAC	6 cut(s)	725, 904, 1107, 1245, 1323, 1349
DdeI	CTNAG	8 cut(s)	223, 275, 319, 448, 611, 854, 965, 1103
DpnI	GATC	4 cut(s)	156, 569, 721, 1259
DpnII	GATC	4 cut(s)	154, 567, 719, 1257
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	1113
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	513
Eco91I	GGTNACC	1 cut(s)	1067
EcoO65I	GGTNACC	1 cut(s)	1067
EcoRII	CCWGG	1 cut(s)	1063
EcoT14I	CCWWGG	1 cut(s)	1113
EcoT22I	ATGCAT	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	1113
Esp3I	CGTCTC	1 cut(s)	1338
FaeI	CATG	7 cut(s)	77, 346, 433, 511, 1171, 1201, 1221
FaqI	GGGAC	2 cut(s)	125, 916
FatI	CATG	7 cut(s)	73, 342, 429, 507, 1167, 1197, 1217
FauI	CCCGC	1 cut(s)	98
Fnu4HI	GCNGC	6 cut(s)	144, 303, 306, 309, 525, 1047
FokI	GGATG	4 cut(s)	74, 282, 774, 1275
Fsp4HI	GCNGC	6 cut(s)	144, 303, 306, 309, 525, 1047
FspAI	RTGCGCAY	1 cut(s)	72
FspBI	CTAG	1 cut(s)	257
FspI	TGCGCA	1 cut(s)	72
GlaI	GCGC	5 cut(s)	72, 255, 688, 784, 786
GluI	GCNGC	6 cut(s)	144, 303, 306, 309, 525, 1047
HaeII	RGCGCY	1 cut(s)	690
HgaI	GACGC	2 cut(s)	66, 1183
HhaI	GCGC	5 cut(s)	73, 256, 689, 785, 787
Hin1II	CATG	7 cut(s)	77, 346, 433, 511, 1171, 1201, 1221
Hin6I	GCGC	5 cut(s)	71, 254, 687, 783, 785
HinP1I	GCGC	5 cut(s)	71, 254, 687, 783, 785
HindIII	AAGCTT	1 cut(s)	277
HinfI	GANTC	4 cut(s)	411, 613, 744, 929
HphI	GGTGA	5 cut(s)	149, 491, 701, 1061, 1285
Hpy188I	TCNGA	3 cut(s)	192, 1262, 1301
Hpy188III	TCNNGA	7 cut(s)	29, 225, 264, 374, 430, 853, 1312
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	959
HpyCH4III	ACNGT	4 cut(s)	240, 595, 1008, 1135
HpyCH4IV	ACGT	5 cut(s)	16, 182, 348, 829, 1331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 308, 881, 890
HpyF3I	CTNAG	8 cut(s)	223, 275, 319, 448, 611, 854, 965, 1103
HpySE526I	ACGT	5 cut(s)	16, 182, 348, 829, 1331
Hsp92II	CATG	7 cut(s)	77, 346, 433, 511, 1171, 1201, 1221
HspAI	GCGC	5 cut(s)	71, 254, 687, 783, 785
Kzo9I	GATC	4 cut(s)	154, 567, 719, 1257
LmnI	GCTCC	1 cut(s)	1181
Lsp1109I	GCAGC	6 cut(s)	155, 289, 292, 295, 511, 1058
LweI	GCATC	6 cut(s)	58, 113, 269, 796, 893, 1253
MaeI	CTAG	1 cut(s)	257
MaeII	ACGT	5 cut(s)	16, 182, 348, 829, 1331
MaeIII	GTNAC	5 cut(s)	295, 1027, 1067, 1129, 1170
MalI	GATC	4 cut(s)	156, 569, 721, 1259
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	4 cut(s)	154, 567, 719, 1257
MboII	GAAGA	4 cut(s)	149, 420, 608, 986
MflI	RGATCY	1 cut(s)	719
MluCI	AATT	9 cut(s)	7, 162, 228, 576, 699, 733, 1035, 1290, 1344
MlyI	GAGTC	2 cut(s)	622, 938
MmeI	TCCRAC	2 cut(s)	977, 1159
Mph1103I	ATGCAT	1 cut(s)	886
MseI	TTAA	5 cut(s)	329, 732, 908, 1091, 1295
MslI	CAYNNNNRTG	2 cut(s)	347, 815
MspA1I	CMGCKG	1 cut(s)	755
MspR9I	CCNGG	1 cut(s)	1065
MvaI	CCWGG	1 cut(s)	1065
MvnI	CGCG	1 cut(s)	785
MwoI	GCNNNNNNNGC	4 cut(s)	32, 308, 881, 890
NdeII	GATC	4 cut(s)	154, 567, 719, 1257
NheI	GCTAGC	1 cut(s)	256
NlaIII	CATG	7 cut(s)	77, 346, 433, 511, 1171, 1201, 1221
NlaIV	GGNNCC	1 cut(s)	536
NmeAIII	GCCGAG	1 cut(s)	645
NmuCI	GTSAC	3 cut(s)	1067, 1129, 1170
NsbI	TGCGCA	1 cut(s)	72
NsiI	ATGCAT	1 cut(s)	886
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PagI	TCATGA	1 cut(s)	429
PauI	GCGCGC	1 cut(s)	783
PcsI	WCGNNNNNNNCGW	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	411, 744
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	6 cut(s)	145, 304, 307, 310, 526, 1048
PleI	GAGTC	2 cut(s)	621, 937
PpsI	GAGTC	2 cut(s)	621, 937
PsiI	TTATAA	1 cut(s)	1211
Psp6I	CCWGG	1 cut(s)	1063
PspEI	GGTNACC	1 cut(s)	1067
PspGI	CCWGG	1 cut(s)	1063
PspN4I	GGNNCC	1 cut(s)	536
PsrI	GAACNNNNNNTAC	2 cut(s)	896, 928
PsuI	RGATCY	1 cut(s)	719
PteI	GCGCGC	1 cut(s)	783
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	6 cut(s)	726, 905, 1108, 1246, 1324, 1350
RsaNI	GTAC	6 cut(s)	725, 904, 1107, 1245, 1323, 1349
RseI	CAYNNNNRTG	2 cut(s)	347, 815
SaqAI	TTAA	5 cut(s)	329, 732, 908, 1091, 1295
SatI	GCNGC	6 cut(s)	144, 303, 306, 309, 525, 1047
Sau3AI	GATC	4 cut(s)	154, 567, 719, 1257
ScaI	AGTACT	1 cut(s)	1108
SchI	GAGTC	2 cut(s)	622, 938
ScrFI	CCNGG	1 cut(s)	1065
SfaNI	GCATC	6 cut(s)	58, 113, 269, 796, 893, 1253
SfcI	CTRYAG	1 cut(s)	750
SmiMI	CAYNNNNRTG	2 cut(s)	347, 815
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	9 cut(s)	7, 162, 228, 576, 699, 733, 1035, 1290, 1344
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	257
StyD4I	CCNGG	1 cut(s)	1063
StyI	CCWWGG	1 cut(s)	1113
TaaI	ACNGT	4 cut(s)	240, 595, 1008, 1135
TaiI	ACGT	5 cut(s)	19, 185, 351, 832, 1334
TaqI	TCGA	4 cut(s)	30, 422, 671, 1252
TasI	AATT	9 cut(s)	7, 162, 228, 576, 699, 733, 1035, 1290, 1344
TatI	WGTACW	2 cut(s)	1106, 1348
TfiI	GAWTC	2 cut(s)	411, 744
Tru1I	TTAA	5 cut(s)	329, 732, 908, 1091, 1295
Tru9I	TTAA	5 cut(s)	329, 732, 908, 1091, 1295
TscAI	CASTG	6 cut(s)	546, 877, 1011, 1026, 1132, 1179
TseFI	GTSAC	3 cut(s)	1067, 1129, 1170
TseI	GCWGC	6 cut(s)	143, 302, 305, 308, 524, 1046
Tsp45I	GTSAC	3 cut(s)	1067, 1129, 1170
TspDTI	ATGAA	2 cut(s)	418, 446
TspRI	CASTG	6 cut(s)	546, 877, 1011, 1026, 1132, 1179
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	1 cut(s)	77
XspI	CTAG	1 cut(s)	257
ZrmI	AGTACT	1 cut(s)	1108
Zsp2I	ATGCAT	1 cut(s)	886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.