Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

15655319 .. 15660126

Gene Structure 4808 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGCCGATGATGAGTCAAGAACCATCCTGTTGGAGAAGAACGAAGACTGCCCTGGCTGTATCATTGATCGAACCAAGCAACAGCAACGAGGCGTTCCTTACTTGCACCTCTCCTTCATCTGGCTCGTGTCACTCTGCACTGCTCTTCCAATATCTTCACTGTTTCCATATATTTATTTCATGATCAGAGACTTCCATATAGCAAAACAAGAAGAAGATATTGGTTTCTATGCTGGTTTTGTTGGATCATCATTCATGATTGGAAGAGCTTTGACATCTATTTTCTGGGGGAAATTAGCTGATCGTTATGGTCGCAAACCTATTATTCTCATTGGGACATTCTCAGTGATCATATTCAATACCCTCTTTGGTCTAAGCACAAGTTTCTGGCTTGCAATTTCCGTTAGATTTCTTCTTGGCTGCTTCAATTGTTTACTTGGAGTTATAAGAGCATATGCTTCAGAAGTCGTTAGCGAAGAGTATAACGCTCTTAGTCTTTCTGTCGTGAGTACATCAAGAGGTATAGGATTGATACTAGGTCCTGCTATTGGAGGTTATCTTGCTCAGCCTGCAGAAAAGTACCCAAATATATTTTCCCAGAGTTCAGTTTTTGGGAGGTTTCCATATTTTCTGCCGAGCTTAGTTATATCCGTCTATGCTACTGCGGTTCTCATCGCTTGCTGGTGGCTTCCTGAAACTCTTCATACACGTTGTAGAATTGCACAAGGGAGACTTAATCCAACAGAGCTAAACGATGATGAAAGTAGAGGAGGAGGACTTGATGAACAGAAAATAATTAATAAGCCAAGTCTCTTGAGGAATCGTCCATTGATGGCTATCATCATTGTTTATTGTGTTTTTTCCCTCCAAGAGATAGCATACAATGAGATATTCTCACTCTGGGCTGTTAGTGACCGAAGCTATGGAGGATTGAGCTTCTCATCTCAAGATGTTGGTGAAGTTTTAGCTATATCAGGACTTGGGCTTCTGGTGTTTCAACTTTTGGTATACCCGCCATTGGAGAAATCCGTGGGACTCCTTGCGGTTATACGTCTTTCTGCGGTATTGCTGATACCGCTGCTTTCGTGTTACCCCTATATAGCTTTGCTTTCTGGGGTGACTCTCCATTTGGTGATAAATTGTGCATCCATCATAAAAAACGCTTTGTCTATCTCACTTGTCACAGGACTGTTTATCATGTTGAACAAAGCTGTGCCTCAGAATCAGAGAGGTGCTGCTAATGGCATTTCTATGACCGCGATGTCTGTTTTCAAATCATTTGGCCCTGCCGGTGGAGGGGTCTTATTCTCATGGGCGCAAAAGAGACAAGACGCTACATTCCTTCCAGGTGATGAGATGGTGTTCTTGGTGTTGAATTTGGTACAGCTCGTAGGATTGATACTAACGTTCATACCTTACATTTCCCAAATCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009987 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0034220 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

478

Amino Acids

52.61

Weight (kDa)

7.97

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	40 - 429	5.9e-35	Major Facilitator Superfamily
Sugar_tr	PF00083	76 - 233	5.7e-13	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AasI	GACNNNNNNGTC	1 cut(s)	1261
AccI	GTMKAC	1 cut(s)	1008
AccII	CGCG	1 cut(s)	1259
AciI	CCGC	6 cut(s)	665, 1013, 1043, 1061, 1076, 1257
AclI	AACGTT	1 cut(s)	1406
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	1375
AcuI	CTGAAG	1 cut(s)	444
AfaI	GTAC	3 cut(s)	511, 581, 1383
AfiI	CCNNNNNNNGG	5 cut(s)	120, 548, 1018, 1292, 1296
AflIII	ACRYGT	1 cut(s)	707
AgsI	TTSAA	6 cut(s)	358, 427, 998, 1204, 1273, 1375
AjnI	CCWGG	2 cut(s)	52, 1345
AjuI	GAANNNNNNNTTGG	4 cut(s)	204, 236, 577, 609
Alw26I	GTCTC	4 cut(s)	183, 724, 815, 1318
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	3, 1282
ApeKI	GCWGC	3 cut(s)	420, 1078, 1235
ApoI	RAATTY	1 cut(s)	1375
ArsI	GACNNNNNNTTYG	2 cut(s)	1111, 1143
AseI	ATTAAT	1 cut(s)	798
Asp700I	GAANNNNTTC	1 cut(s)	699
AspLEI	GCGC	1 cut(s)	1318
AspS9I	GGNCC	2 cut(s)	539, 1283
AsuHPI	GGTGA	4 cut(s)	968, 1129, 1144, 1361
AvaII	GGWCC	1 cut(s)	539
BaeI	ACNNNNGTAYC	2 cut(s)	1391, 1424
BauI	CACGAG	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	407, 1065, 1222
BccI	CCATC	4 cut(s)	32, 826, 1157, 1351
BciT130I	CCWGG	2 cut(s)	54, 1347
BclI	TGATCA	2 cut(s)	183, 348
BcoDI	GTCTC	4 cut(s)	183, 724, 815, 1318
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	1 cut(s)	570
BisI	GCNGC	3 cut(s)	421, 1079, 1236
BlpI	GCTNAGC	1 cut(s)	564
BlsI	GCNGC	3 cut(s)	422, 1080, 1237
Bme1390I	CCNGG	2 cut(s)	54, 1347
Bme18I	GGWCC	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	539, 1283
BmrFI	CCNGG	2 cut(s)	54, 1347
BmsI	GCATC	1 cut(s)	1154
BpiI	GAAGAC	1 cut(s)	51
BplI	GAGNNNNNCTC	2 cut(s)	878, 910
Bpu1102I	GCTNAGC	1 cut(s)	564
BpuEI	CTTGAG	2 cut(s)	835, 930
BsaBI	GATNNNNATC	1 cut(s)	836
BsaJI	CCNNGG	2 cut(s)	52, 1029
Bsc4I	CCNNNNNNNGG	5 cut(s)	120, 548, 1018, 1292, 1296
Bse118I	RCCGGY	1 cut(s)	1289
Bse1I	ACTGG	1 cut(s)	1432
Bse8I	GATNNNNATC	1 cut(s)	836
BseBI	CCWGG	2 cut(s)	54, 1347
BseDI	CCNNGG	2 cut(s)	52, 1029
BseGI	GGATG	2 cut(s)	24, 1145
BseJI	GATNNNNATC	1 cut(s)	836
BseLI	CCNNNNNNNGG	5 cut(s)	120, 548, 1018, 1292, 1296
BseMII	CTCAG	3 cut(s)	357, 578, 1232
BseNI	ACTGG	1 cut(s)	1432
BseRI	GAGGAG	2 cut(s)	783, 786
BseXI	GCAGC	3 cut(s)	407, 1065, 1222
BsgI	GTGCAG	1 cut(s)	121
Bsh1236I	CGCG	1 cut(s)	1259
BshFI	GGCC	2 cut(s)	5, 1284
BsiSI	CCGG	1 cut(s)	1290
BslFI	GGGAC	2 cut(s)	349, 1047
BslI	CCNNNNNNNGG	5 cut(s)	120, 548, 1018, 1292, 1296
BsmAI	GTCTC	4 cut(s)	183, 724, 815, 1318
BsmFI	GGGAC	2 cut(s)	349, 1047
BsnI	GGCC	2 cut(s)	5, 1284
Bsp143I	GATC	5 cut(s)	67, 183, 245, 301, 348
Bsp1720I	GCTNAGC	1 cut(s)	564
BspACI	CCGC	6 cut(s)	665, 1013, 1043, 1061, 1076, 1257
BspANI	GGCC	2 cut(s)	5, 1284
BspCNI	CTCAG	3 cut(s)	356, 577, 1231
BspFNI	CGCG	1 cut(s)	1259
BspHI	TCATGA	2 cut(s)	180, 255
BspMAI	CTGCAG	1 cut(s)	574
BspPI	GGATC	1 cut(s)	253
BspQI	GCTCTTC	2 cut(s)	150, 259
BsrFI	RCCGGY	1 cut(s)	1289
BsrI	ACTGG	1 cut(s)	1432
BssAI	RCCGGY	1 cut(s)	1289
BssECI	CCNNGG	2 cut(s)	52, 1029
BssMI	GATC	5 cut(s)	67, 183, 245, 301, 348
BssNAI	GTATAC	1 cut(s)	1009
BssSI	CACGAG	1 cut(s)	125
Bst1107I	GTATAC	1 cut(s)	1009
Bst2BI	CACGAG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	54, 1347
Bst4CI	ACNGT	2 cut(s)	162, 1191
Bst6I	CTCTTC	4 cut(s)	150, 259, 471, 705
BstC8I	GCNNGC	3 cut(s)	393, 570, 679
BstDEI	CTNAG	6 cut(s)	343, 374, 491, 564, 640, 1218
BstDSI	CCRYGG	1 cut(s)	1029
BstF5I	GGATG	2 cut(s)	24, 1145
BstFNI	CGCG	1 cut(s)	1259
BstHHI	GCGC	1 cut(s)	1318
BstKTI	GATC	5 cut(s)	70, 186, 248, 304, 351
BstMAI	GTCTC	4 cut(s)	183, 724, 815, 1318
BstMBI	GATC	5 cut(s)	67, 183, 245, 301, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	569, 1075
BstNI	CCWGG	2 cut(s)	54, 1347
BstSCI	CCNGG	2 cut(s)	52, 1345
BstSFI	CTRYAG	1 cut(s)	570
BstUI	CGCG	1 cut(s)	1259
BstV1I	GCAGC	3 cut(s)	407, 1065, 1222
BstV2I	GAAGAC	1 cut(s)	51
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstZ17I	GTATAC	1 cut(s)	1009
BsuRI	GGCC	2 cut(s)	5, 1284
BtgI	CCRYGG	1 cut(s)	1029
BtgZI	GCGATG	2 cut(s)	658, 1274
BtsCI	GGATG	2 cut(s)	24, 1145
BtsI	GCAGTG	1 cut(s)	138
BtsIMutI	CAGTG	3 cut(s)	138, 158, 351
Cac8I	GCNNGC	3 cut(s)	393, 570, 679
CciI	TCATGA	2 cut(s)	180, 255
CfoI	GCGC	1 cut(s)	1318
Cfr10I	RCCGGY	1 cut(s)	1289
Cfr13I	GGNCC	2 cut(s)	539, 1283
CseI	GACGC	1 cut(s)	1340
Csp6I	GTAC	3 cut(s)	510, 580, 1382
CviAII	CATG	4 cut(s)	181, 256, 1198, 1311
CviQI	GTAC	3 cut(s)	510, 580, 1382
DdeI	CTNAG	6 cut(s)	343, 374, 491, 564, 640, 1218
DpnI	GATC	5 cut(s)	69, 185, 247, 303, 350
DpnII	GATC	5 cut(s)	67, 183, 245, 301, 348
DrdI	GACNNNNNNGTC	1 cut(s)	1261
DseDI	GACNNNNNNGTC	1 cut(s)	1261
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	150, 259, 471, 705
EarI	CTCTTC	4 cut(s)	150, 259, 471, 705
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	1 cut(s)	444
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRII	CCWGG	2 cut(s)	52, 1345
FaeI	CATG	4 cut(s)	184, 259, 1201, 1314
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FaqI	GGGAC	2 cut(s)	349, 1047
FatI	CATG	4 cut(s)	180, 255, 1197, 1310
FauI	CCCGC	1 cut(s)	1020
FauNDI	CATATG	1 cut(s)	454
FbaI	TGATCA	2 cut(s)	183, 348
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	3 cut(s)	421, 1079, 1236
FokI	GGATG	2 cut(s)	11, 1132
Fsp4HI	GCNGC	3 cut(s)	421, 1079, 1236
FspBI	CTAG	1 cut(s)	536
GlaI	GCGC	1 cut(s)	1317
GluI	GCNGC	3 cut(s)	421, 1079, 1236
HaeIII	GGCC	2 cut(s)	5, 1284
HapII	CCGG	1 cut(s)	1290
HgaI	GACGC	1 cut(s)	1340
HhaI	GCGC	1 cut(s)	1318
Hin1II	CATG	4 cut(s)	184, 259, 1201, 1314
Hin6I	GCGC	1 cut(s)	1316
HinP1I	GCGC	1 cut(s)	1316
HinfI	GANTC	5 cut(s)	14, 820, 1035, 1120, 1222
HpaII	CCGG	1 cut(s)	1290
HphI	GGTGA	4 cut(s)	968, 1129, 1144, 1361
Hpy166II	GTNNAC	2 cut(s)	434, 1009
Hpy188I	TCNGA	4 cut(s)	188, 463, 1221, 1227
Hpy188III	TCNNGA	9 cut(s)	18, 181, 256, 505, 516, 692, 814, 947, 975
Hpy8I	GTNNAC	2 cut(s)	434, 1009
HpyAV	CCTTC	2 cut(s)	124, 1352
HpyCH4III	ACNGT	2 cut(s)	162, 1191
HpyCH4IV	ACGT	3 cut(s)	709, 1051, 1406
HpyCH4V	TGCA	6 cut(s)	106, 138, 395, 572, 722, 1145
HpyF10VI	GCNNNNNNNGC	2 cut(s)	569, 1075
HpyF3I	CTNAG	6 cut(s)	343, 374, 491, 564, 640, 1218
HpySE526I	ACGT	3 cut(s)	709, 1051, 1406
Hsp92II	CATG	4 cut(s)	184, 259, 1201, 1314
HspAI	GCGC	1 cut(s)	1316
Ksp22I	TGATCA	2 cut(s)	183, 348
Kzo9I	GATC	5 cut(s)	67, 183, 245, 301, 348
LguI	GCTCTTC	2 cut(s)	150, 259
Lsp1109I	GCAGC	3 cut(s)	407, 1065, 1222
LweI	GCATC	1 cut(s)	1154
MaeI	CTAG	1 cut(s)	536
MaeII	ACGT	3 cut(s)	709, 1051, 1406
MaeIII	GTNAC	5 cut(s)	129, 911, 1088, 1117, 1180
MalI	GATC	5 cut(s)	69, 185, 247, 303, 350
MboI	GATC	5 cut(s)	67, 183, 245, 301, 348
MfeI	CAATTG	1 cut(s)	427
MluCI	AATT	7 cut(s)	293, 396, 427, 717, 795, 1138, 1375
MlyI	GAGTC	3 cut(s)	23, 1029, 1114
MmeI	TCCRAC	3 cut(s)	12, 223, 764
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	2 cut(s)	735, 798
MslI	CAYNNNNRTG	1 cut(s)	1250
MspA1I	CMGCKG	1 cut(s)	1078
MspI	CCGG	1 cut(s)	1290
MspR9I	CCNGG	2 cut(s)	54, 1347
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	54, 1347
MvnI	CGCG	1 cut(s)	1259
MwoI	GCNNNNNNNGC	2 cut(s)	569, 1075
NdeI	CATATG	1 cut(s)	454
NdeII	GATC	5 cut(s)	67, 183, 245, 301, 348
NlaIII	CATG	4 cut(s)	184, 259, 1201, 1314
NmeAIII	GCCGAG	1 cut(s)	660
NmuCI	GTSAC	4 cut(s)	129, 911, 1117, 1180
PagI	TCATGA	2 cut(s)	180, 255
PciSI	GCTCTTC	2 cut(s)	150, 259
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	820, 1222
PkrI	GCNGC	3 cut(s)	422, 1080, 1237
PleI	GAGTC	3 cut(s)	22, 1029, 1114
PpsI	GAGTC	3 cut(s)	22, 1029, 1114
PpuMI	RGGWCCY	1 cut(s)	539
PshBI	ATTAAT	1 cut(s)	798
PsiI	TTATAA	1 cut(s)	446
Psp1406I	AACGTT	1 cut(s)	1406
Psp5II	RGGWCCY	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	52, 1345
PspGI	CCWGG	2 cut(s)	52, 1345
PspPI	GGNCC	2 cut(s)	539, 1283
PspPPI	RGGWCCY	1 cut(s)	539
PstI	CTGCAG	1 cut(s)	574
RsaI	GTAC	3 cut(s)	511, 581, 1383
RsaNI	GTAC	3 cut(s)	510, 580, 1382
RseI	CAYNNNNRTG	1 cut(s)	1250
SapI	GCTCTTC	2 cut(s)	150, 259
SaqAI	TTAA	2 cut(s)	735, 798
SatI	GCNGC	3 cut(s)	421, 1079, 1236
Sau3AI	GATC	5 cut(s)	67, 183, 245, 301, 348
Sau96I	GGNCC	2 cut(s)	539, 1283
SchI	GAGTC	3 cut(s)	23, 1029, 1114
ScrFI	CCNGG	2 cut(s)	54, 1347
SfaNI	GCATC	1 cut(s)	1154
SfcI	CTRYAG	1 cut(s)	570
SinI	GGWCC	1 cut(s)	539
SmiMI	CAYNNNNRTG	1 cut(s)	1250
SmlI	CTYRAG	2 cut(s)	814, 945
SmoI	CTYRAG	2 cut(s)	814, 945
Sse9I	AATT	7 cut(s)	293, 396, 427, 717, 795, 1138, 1375
SsiI	CCGC	6 cut(s)	665, 1013, 1043, 1061, 1076, 1257
SspMI	CTAG	1 cut(s)	536
StyD4I	CCNGG	2 cut(s)	52, 1345
TaaI	ACNGT	2 cut(s)	162, 1191
TaiI	ACGT	3 cut(s)	712, 1054, 1409
TaqI	TCGA	1 cut(s)	70
TaqII	GACCGA	1 cut(s)	930
TasI	AATT	7 cut(s)	293, 396, 427, 717, 795, 1138, 1375
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	820, 1222
Tru1I	TTAA	2 cut(s)	735, 798
Tru9I	TTAA	2 cut(s)	735, 798
TscAI	CASTG	3 cut(s)	145, 165, 351
TseFI	GTSAC	4 cut(s)	129, 911, 1117, 1180
TseI	GCWGC	3 cut(s)	420, 1078, 1235
Tsp45I	GTSAC	4 cut(s)	129, 911, 1117, 1180
TspDTI	ATGAA	7 cut(s)	106, 169, 244, 692, 774, 798, 1399
TspGWI	ACGGA	3 cut(s)	391, 640, 1018
TspRI	CASTG	3 cut(s)	145, 165, 351
VpaK11BI	GGWCC	1 cut(s)	539
VspI	ATTAAT	1 cut(s)	798
XapI	RAATTY	1 cut(s)	1375
XmiI	GTMKAC	1 cut(s)	1008
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.