Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

48216054 .. 48226112

Gene Structure 10059 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00319980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGGGTATCGGATTGATCATTGGCCCAGCTTTGGGGGATTCTTTGCCCAGCCAGCAGAGAAATATCCCACTATATTTTCTGCAGACTCTGTATTTGGGAGGTTTCCATACTTCTTACCTTGCCTTTGTATATCGCTTTTTGCACTTGGAATAACCGTTGCATGTTTCTGGCTTCCGGAAACTTTACACAATCACAATGAAAATGCCAGATTACATGATGATTCCTTTGAAGCATTGGAAACAGCATCATGTGGGTCAGATGCAAATGAAATAAAACAAAAAACTGAAGAACAAATACCTAAACAAAGCCTCATGAAGAATTGGCCGTTAATGTCATCAATCATTGTTTATTGTGTTTTCTCACTCCATGACATGGCTTATACAGAGATATTTTCATTATGGGCTGAGAGTCCTCGAAAGTTAGGGGGTTTGAGCTATTCAACTGAGGATGTTGGTGAAGTTCTTGCAATTTCAGGTTTTGGTCTTTTTGTCTTTCAAATTACTCTGTACCCATATGTGGAAAAGATGCTGGGTCCTGTAAGAATTGCTCGCATTGGAGGGGTTTTGAGTATACCTCTTTTGTCAAGCTACCCCTTTATAGCATTGTTATCCGGGTTCTCCCTCTCCATGCTGTTAAATATTGCATCTCTGCTGAAAAATGTCATGTCTATCACGATCGTCACTGGCCTGTTCATTCTCCAAAACAGAGCTGTGGACCAACATCAAAGAGGTGCTGCCAATGGAATTGCTATGACTGCAATGTCTCTGTTCAAGGCAGTTGGTCCAGCTGGTGGTGGTGCAGTGTTTTCTTGGGCACAAAAACGCCTGGATGCTTCCATTCTACCTGGTATCCAGATGGTTTTCTTCATCTTGAATATCGTGGAATTAATTGCAGTTCTCATGACATTTAAACCATTTCTTACTGTACGTGATGATAGACAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

315

Amino Acids

34.82

Weight (kDa)

6.07

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	43 - 262	3.2e-08	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	760
AccB7I	CCANNNNNTGG	2 cut(s)	373, 791
AccI	GTMKAC	1 cut(s)	571
AccIII	TCCGGA	1 cut(s)	175
AcoI	YGGCCR	1 cut(s)	323
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	509, 927
AfiI	CCNNNNNNNGG	5 cut(s)	32, 33, 373, 517, 791
AgsI	TTSAA	5 cut(s)	230, 441, 497, 772, 874
AjnI	CCWGG	2 cut(s)	825, 844
AluBI	AGCT	5 cut(s)	30, 435, 588, 710, 788
AluI	AGCT	5 cut(s)	30, 435, 588, 710, 788
Alw26I	GTCTC	1 cut(s)	768
AlwNI	CAGNNNCTG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	175
AoxI	GGCC	3 cut(s)	23, 323, 685
ApeKI	GCWGC	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	77, 109
AseI	ATTAAT	1 cut(s)	887
AspS9I	GGNCC	4 cut(s)	24, 533, 715, 782
AsuC2I	CCSGG	1 cut(s)	613
AsuHPI	GGTGA	1 cut(s)	467
AvaII	GGWCC	3 cut(s)	533, 715, 782
BaeGI	GKGCMC	1 cut(s)	817
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	1 cut(s)	850
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	2 cut(s)	827, 846
BciVI	GTATCC	1 cut(s)	860
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	613
BcoDI	GTCTC	1 cut(s)	768
BfmI	CTRYAG	1 cut(s)	81
BfuI	GTATCC	1 cut(s)	860
BisI	GCNGC	1 cut(s)	735
BlsI	GCNGC	1 cut(s)	736
Bme1390I	CCNGG	3 cut(s)	613, 827, 846
Bme18I	GGWCC	3 cut(s)	533, 715, 782
BmgT120I	GGNCC	4 cut(s)	24, 533, 715, 782
BmiI	GGNNCC	1 cut(s)	534
BmrFI	CCNGG	3 cut(s)	613, 827, 846
BmsI	GCATC	5 cut(s)	250, 254, 516, 653, 820
BplI	GAGNNNNNCTC	2 cut(s)	559, 591
BpuMI	CCSGG	1 cut(s)	613
BsaAI	YACGTR	1 cut(s)	929
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	5 cut(s)	32, 33, 373, 517, 791
Bse1I	ACTGG	1 cut(s)	688
Bse3DI	GCAATG	1 cut(s)	765
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	2 cut(s)	827, 846
BseGI	GGATG	2 cut(s)	454, 835
BseLI	CCNNNNNNNGG	5 cut(s)	32, 33, 373, 517, 791
BseMI	GCAATG	1 cut(s)	765
BseMII	CTCAG	2 cut(s)	396, 435
BseNI	ACTGG	1 cut(s)	688
BseSI	GKGCMC	1 cut(s)	817
BseXI	GCAGC	1 cut(s)	721
BseYI	CCCAGC	3 cut(s)	26, 48, 529
BsgI	GTGCAG	1 cut(s)	819
Bsh1285I	CGRYCG	1 cut(s)	678
BshFI	GGCC	3 cut(s)	25, 325, 687
BsiEI	CGRYCG	1 cut(s)	678
BsiSI	CCGG	2 cut(s)	176, 612
BslI	CCNNNNNNNGG	5 cut(s)	32, 33, 373, 517, 791
BsmAI	GTCTC	1 cut(s)	768
BsnI	GGCC	3 cut(s)	25, 325, 687
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	16, 675
BspANI	GGCC	3 cut(s)	25, 325, 687
BspCNI	CTCAG	2 cut(s)	397, 436
BspEI	TCCGGA	1 cut(s)	175
BspHI	TCATGA	2 cut(s)	312, 900
BspLI	GGNNCC	1 cut(s)	534
BspMAI	CTGCAG	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	765
BsrI	ACTGG	1 cut(s)	688
BssMI	GATC	2 cut(s)	16, 675
BssNAI	GTATAC	1 cut(s)	572
Bst1107I	GTATAC	1 cut(s)	572
Bst2UI	CCWGG	2 cut(s)	827, 846
Bst4CI	ACNGT	2 cut(s)	157, 925
BstBAI	YACGTR	1 cut(s)	929
BstC8I	GCNNGC	2 cut(s)	54, 550
BstDEI	CTNAG	2 cut(s)	405, 444
BstF5I	GGATG	2 cut(s)	454, 835
BstKTI	GATC	2 cut(s)	19, 678
BstMAI	GTCTC	1 cut(s)	768
BstMBI	GATC	2 cut(s)	16, 675
BstMCI	CGRYCG	1 cut(s)	678
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 755
BstNI	CCWGG	2 cut(s)	827, 846
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	3 cut(s)	611, 825, 844
BstSFI	CTRYAG	1 cut(s)	81
BstSLI	GKGCMC	1 cut(s)	817
BstV1I	GCAGC	1 cut(s)	721
BstZ17I	GTATAC	1 cut(s)	572
BsuI	GTATCC	1 cut(s)	860
BsuRI	GGCC	3 cut(s)	25, 325, 687
BtsCI	GGATG	2 cut(s)	454, 835
BtsI	GCAGTG	1 cut(s)	807
BtsIMutI	CAGTG	2 cut(s)	681, 807
Cac8I	GCNNGC	2 cut(s)	54, 550
CaiI	CAGNNNCTG	1 cut(s)	89
CciI	TCATGA	2 cut(s)	312, 900
Cfr13I	GGNCC	4 cut(s)	24, 533, 715, 782
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	2 cut(s)	508, 926
CviAII	CATG	9 cut(s)	162, 215, 249, 313, 368, 373, 628, 664, 901
CviQI	GTAC	2 cut(s)	508, 926
DdeI	CTNAG	2 cut(s)	405, 444
DpnI	GATC	2 cut(s)	18, 677
DpnII	GATC	2 cut(s)	16, 675
DraI	TTTAAA	1 cut(s)	910
DrdI	GACNNNNNNGTC	1 cut(s)	760
DseDI	GACNNNNNNGTC	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	323
Eco47I	GGWCC	3 cut(s)	533, 715, 782
Eco57I	CTGAAG	1 cut(s)	306
EcoO109I	RGGNCCY	1 cut(s)	533
EcoRII	CCWGG	2 cut(s)	825, 844
FaeI	CATG	9 cut(s)	165, 218, 252, 316, 371, 376, 631, 667, 904
FatI	CATG	9 cut(s)	161, 214, 248, 312, 367, 372, 627, 663, 900
FauNDI	CATATG	1 cut(s)	514
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	571
Fnu4HI	GCNGC	1 cut(s)	735
FokI	GGATG	2 cut(s)	461, 842
Fsp4HI	GCNGC	1 cut(s)	735
GluI	GCNGC	1 cut(s)	735
GsaI	CCCAGC	3 cut(s)	30, 52, 533
HaeIII	GGCC	3 cut(s)	25, 325, 687
HapII	CCGG	2 cut(s)	176, 612
Hin1II	CATG	9 cut(s)	165, 218, 252, 316, 371, 376, 631, 667, 904
HinfI	GANTC	4 cut(s)	39, 86, 221, 409
HpaII	CCGG	2 cut(s)	176, 612
HphI	GGTGA	1 cut(s)	467
Hpy166II	GTNNAC	2 cut(s)	572, 715
Hpy188I	TCNGA	2 cut(s)	12, 259
Hpy188III	TCNNGA	6 cut(s)	176, 313, 673, 853, 871, 901
Hpy8I	GTNNAC	2 cut(s)	572, 715
HpyCH4III	ACNGT	2 cut(s)	157, 925
HpyCH4IV	ACGT	1 cut(s)	928
HpyCH4V	TGCA	9 cut(s)	83, 143, 161, 263, 467, 644, 758, 800, 893
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 755
HpyF3I	CTNAG	2 cut(s)	405, 444
HpySE526I	ACGT	1 cut(s)	928
Hsp92II	CATG	9 cut(s)	165, 218, 252, 316, 371, 376, 631, 667, 904
Kpn2I	TCCGGA	1 cut(s)	175
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 675
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	5 cut(s)	250, 254, 516, 653, 820
MabI	ACCWGGT	1 cut(s)	844
MaeII	ACGT	1 cut(s)	928
MaeIII	GTNAC	1 cut(s)	679
MalI	GATC	2 cut(s)	18, 677
MboI	GATC	2 cut(s)	16, 675
MboII	GAAGA	3 cut(s)	299, 328, 856
MhlI	GDGCHC	1 cut(s)	817
MluCI	AATT	7 cut(s)	319, 468, 498, 543, 744, 884, 888
MlyI	GAGTC	2 cut(s)	80, 418
MnlI	CCTC	8 cut(s)	93, 320, 423, 439, 551, 585, 632, 722
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	4 cut(s)	329, 635, 887, 909
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	2 cut(s)	176, 612
MspR9I	CCNGG	3 cut(s)	613, 827, 846
MvaI	CCWGG	2 cut(s)	827, 846
MwoI	GCNNNNNNNGC	2 cut(s)	53, 755
NciI	CCSGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	514
NdeII	GATC	2 cut(s)	16, 675
NlaIII	CATG	9 cut(s)	165, 218, 252, 316, 371, 376, 631, 667, 904
NlaIV	GGNNCC	1 cut(s)	534
NmuCI	GTSAC	1 cut(s)	679
NspI	RCATGY	1 cut(s)	165
PagI	TCATGA	2 cut(s)	312, 900
PfeI	GAWTC	2 cut(s)	39, 221
PflMI	CCANNNNNTGG	2 cut(s)	373, 791
PkrI	GCNGC	1 cut(s)	736
Ple19I	CGATCG	1 cut(s)	678
PleI	GAGTC	2 cut(s)	80, 417
PpsI	GAGTC	2 cut(s)	80, 417
Ppu21I	YACGTR	1 cut(s)	929
PpuMI	RGGWCCY	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	887
Psp5II	RGGWCCY	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	825, 844
PspFI	CCCAGC	3 cut(s)	26, 48, 529
PspGI	CCWGG	2 cut(s)	825, 844
PspN4I	GGNNCC	1 cut(s)	534
PspPI	GGNCC	4 cut(s)	24, 533, 715, 782
PspPPI	RGGWCCY	1 cut(s)	533
PstI	CTGCAG	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	678
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	2 cut(s)	509, 927
RsaNI	GTAC	2 cut(s)	508, 926
SaqAI	TTAA	4 cut(s)	329, 635, 887, 909
SatI	GCNGC	1 cut(s)	735
Sau3AI	GATC	2 cut(s)	16, 675
Sau96I	GGNCC	4 cut(s)	24, 533, 715, 782
SchI	GAGTC	2 cut(s)	80, 418
ScrFI	CCNGG	3 cut(s)	613, 827, 846
SduI	GDGCHC	1 cut(s)	817
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	5 cut(s)	250, 254, 516, 653, 820
SfcI	CTRYAG	1 cut(s)	81
SinI	GGWCC	3 cut(s)	533, 715, 782
Sse9I	AATT	7 cut(s)	319, 468, 498, 543, 744, 884, 888
SspI	AATATT	1 cut(s)	640
StyD4I	CCNGG	3 cut(s)	611, 825, 844
TaaI	ACNGT	2 cut(s)	157, 925
TaiI	ACGT	1 cut(s)	931
TaqI	TCGA	1 cut(s)	415
TasI	AATT	7 cut(s)	319, 468, 498, 543, 744, 884, 888
TfiI	GAWTC	2 cut(s)	39, 221
Tru1I	TTAA	4 cut(s)	329, 635, 887, 909
Tru9I	TTAA	4 cut(s)	329, 635, 887, 909
TscAI	CASTG	2 cut(s)	688, 807
TseFI	GTSAC	1 cut(s)	679
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	679
TspDTI	ATGAA	6 cut(s)	213, 282, 329, 384, 682, 856
TspRI	CASTG	2 cut(s)	688, 807
Van91I	CCANNNNNTGG	2 cut(s)	373, 791
VpaK11BI	GGWCC	3 cut(s)	533, 715, 782
VspI	ATTAAT	1 cut(s)	887
XceI	RCATGY	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.