Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Reverse (-)

43337706 .. 43338165

Gene Structure 460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCGGCAGAGGATGAGGAGCACAGGGAGAGCTTGTTGAAGAAGGTATACTATGAAAACTGCTCGGGTTGTAAGGTGGAAGAGGAGAAGGCGTTGCAACGAGGCATTCCTGTGTTCGAAAGCTTGTGGCTATCCGGGGGATCGGATTTTCATATTGCAAAAAGAGATGAAGATATTGGCTTCTATGCCGGGTATGTAGGGTCTTCGTATATGCTTGGAAGAGCACCGACTTCGGTTCCTGGGGAATGGTGGCTGATCGCTATGGTAGAAGACATGGGAGCATGTGTGAAGTTCAGATCTCCACTAGTACCGATGCACCATGAATTGTCGGGCCAGCTTCTTTTAAACAATGTCAAGTGGGCATTACTTGTAGTGATTGAGGAAGGCAAAAGCAGGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

133

Amino Acids

14.95

Weight (kDa)

5.2

Isoelectric Point (pI)

65.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	48
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	148
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	40
AhlI	ACTAGT	1 cut(s)	304
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	3 cut(s)	33, 123, 337
AluI	AGCT	3 cut(s)	33, 123, 337
Alw21I	GWGCWC	2 cut(s)	24, 226
AlwI	GGATC	1 cut(s)	148
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	2 cut(s)	136, 190
AsuII	TTCGAA	1 cut(s)	117
AvaI	CYCGRG	1 cut(s)	64
BarI	GAAGNNNNNNTAC	2 cut(s)	32, 64
BbsI	GAAGAC	2 cut(s)	195, 276
Bbv12I	GWGCWC	2 cut(s)	24, 226
BcgI	CGANNNNNNTGC	2 cut(s)	213, 247
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	2 cut(s)	136, 190
BcuI	ACTAGT	1 cut(s)	304
BfaI	CTAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	296
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	3 cut(s)	136, 190, 240
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	3 cut(s)	136, 190, 240
BmsI	GCATC	1 cut(s)	303
BpiI	GAAGAC	2 cut(s)	195, 276
Bpu14I	TTCGAA	1 cut(s)	117
BpuMI	CCSGG	2 cut(s)	136, 190
BsaJI	CCNNGG	2 cut(s)	135, 239
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 50, 77, 107, 270, 300
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	2 cut(s)	135, 239
BseGI	GGATG	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	32, 98
BshFI	GGCC	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	24, 226
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	135, 189
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	2 cut(s)	24, 226
Bsp143I	GATC	3 cut(s)	140, 255, 296
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	214
BspT104I	TTCGAA	1 cut(s)	117
BssECI	CCNNGG	2 cut(s)	135, 239
BssMI	GATC	3 cut(s)	140, 255, 296
BssNAI	GTATAC	1 cut(s)	49
Bst1107I	GTATAC	1 cut(s)	49
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	2 cut(s)	75, 214
BstBI	TTCGAA	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	19
BstKTI	GATC	3 cut(s)	143, 258, 299
BstMBI	GATC	3 cut(s)	140, 255, 296
BstNI	CCWGG	1 cut(s)	240
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	3 cut(s)	134, 188, 238
BstV2I	GAAGAC	2 cut(s)	195, 276
BstX2I	RGATCY	1 cut(s)	296
BstYI	RGATCY	1 cut(s)	296
BstZ17I	GTATAC	1 cut(s)	49
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	1 cut(s)	308
CviAII	CATG	3 cut(s)	274, 282, 320
CviJI	RGCY	7 cut(s)	33, 123, 130, 180, 253, 333, 337
CviKI_1	RGCY	7 cut(s)	33, 123, 130, 180, 253, 333, 337
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	3 cut(s)	142, 257, 298
DpnII	GATC	3 cut(s)	140, 255, 296
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	2 cut(s)	75, 214
EarI	CTCTTC	2 cut(s)	75, 214
Eco88I	CYCGRG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	238
FaeI	CATG	3 cut(s)	277, 285, 323
FatI	CATG	3 cut(s)	273, 281, 319
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	6
FokI	GGATG	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	2 cut(s)	135, 189
Hin1II	CATG	3 cut(s)	277, 285, 323
HindIII	AAGCTT	1 cut(s)	121
HpaII	CCGG	2 cut(s)	135, 189
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188I	TCNGA	2 cut(s)	145, 296
Hpy8I	GTNNAC	1 cut(s)	49
HpyAV	CCTTC	3 cut(s)	37, 82, 377
HpyCH4V	TGCA	3 cut(s)	97, 158, 316
Hsp92II	CATG	3 cut(s)	277, 285, 323
Kzo9I	GATC	3 cut(s)	140, 255, 296
LguI	GCTCTTC	1 cut(s)	214
LmnI	GCTCC	2 cut(s)	19, 278
LpnPI	CCDG	8 cut(s)	10, 123, 148, 202, 225, 252, 347, 379
LweI	GCATC	1 cut(s)	303
MaeI	CTAG	1 cut(s)	305
MalI	GATC	3 cut(s)	142, 257, 298
MboI	GATC	3 cut(s)	140, 255, 296
MboII	GAAGA	6 cut(s)	52, 92, 182, 195, 231, 281
MflI	RGATCY	1 cut(s)	296
MhlI	GDGCHC	2 cut(s)	24, 226
MluCI	AATT	1 cut(s)	323
MnlI	CCTC	5 cut(s)	4, 10, 76, 95, 373
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	2 cut(s)	135, 189
MspR9I	CCNGG	3 cut(s)	136, 190, 240
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	240
NciI	CCSGG	2 cut(s)	136, 190
NdeII	GATC	3 cut(s)	140, 255, 296
NlaIII	CATG	3 cut(s)	277, 285, 323
NlaIV	GGNNCC	1 cut(s)	237
NspI	RCATGY	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	117
PciSI	GCTCTTC	1 cut(s)	214
PctI	GAATGC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	296
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
RseI	CAYNNNNRTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	3 cut(s)	140, 255, 296
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	3 cut(s)	136, 190, 240
SduI	GDGCHC	2 cut(s)	24, 226
SetI	ASST	5 cut(s)	35, 48, 78, 125, 339
SfaNI	GCATC	1 cut(s)	303
SfuI	TTCGAA	1 cut(s)	117
SmiMI	CAYNNNNRTG	1 cut(s)	110
SpeI	ACTAGT	1 cut(s)	304
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	134, 188, 238
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TspDTI	ATGAA	4 cut(s)	69, 140, 183, 336
XceI	RCATGY	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	48
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.