Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

21029584 .. 21031416

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22870.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGCTTATGGAGAGATATTCTCATTATGGGCCGTGAGTCCTCGGAAGTTTGGGGGTTTGAGCTTTACAACTGAGGACGTTGGTGAAGTTCTTGCAATTTCTGGTTTTAGTCTTTTTGTCTTCCAAATTACTCTATATCCATATGTTGAAAGGCTTCTTGGTCCTGTTATGATTGCTCGCATTGGAGGGATTATATCCATACCCCTGTTGTCAAGTTACCCGCTTATAGCAATGTTGTCCGGGTTCTCCCTTTTCGTGCTGTTAAACTGTGCATCTGTGCTGAAGAATGTCATATCTATCACGATTATAACCGGCATGTTCATCCTTCAAAACAGAGCGGTGGACCAAAAACAAAGAGGCGCAGCGAATGGACTTTCTATGACAGCAATGTCACTGTTCAAGGCAATTGCTCCAGCTGCTGGTGGTGCATTGTTTTCTTGGGCACAAAAACGTAGGGATGCTGCTATCCTACCTGGAAGCCAGATGATATTCTTCATCTTGAATGTGGTCGAGGCAATTGCAGTTCTGATGACATTTAAGCCGTTTCTCACTCTACGTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

188

Amino Acids

20.29

Weight (kDa)

9.66

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AasI	GACNNNNNNGTC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccBSI	CCGCTC	1 cut(s)	338
AciI	CCGC	2 cut(s)	221, 338
AcuI	CTGAAG	1 cut(s)	302
AfiI	CCNNNNNNNGG	1 cut(s)	419
AgsI	TTSAA	4 cut(s)	149, 329, 400, 502
AjnI	CCWGG	1 cut(s)	472
AjuI	GAANNNNNNNTTGG	2 cut(s)	141, 173
AluBI	AGCT	2 cut(s)	63, 416
AluI	AGCT	2 cut(s)	63, 416
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	362, 416, 461
Asp700I	GAANNNNTTC	1 cut(s)	153
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	3 cut(s)	30, 161, 343
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	1 cut(s)	95
AvaII	GGWCC	2 cut(s)	161, 343
BaeGI	GKGCMC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	374, 403, 448
BceAI	ACGGC	2 cut(s)	17, 526
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	241
BisI	GCNGC	3 cut(s)	363, 417, 462
BlsI	GCNGC	3 cut(s)	364, 418, 463
Bme1390I	CCNGG	2 cut(s)	241, 474
Bme18I	GGWCC	2 cut(s)	161, 343
BmgT120I	GGNCC	3 cut(s)	30, 161, 343
BmrFI	CCNGG	2 cut(s)	241, 474
BmsI	GCATC	2 cut(s)	281, 448
BpiI	GAAGAC	1 cut(s)	112
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	396
BpuMI	CCSGG	1 cut(s)	241
BsaAI	YACGTR	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	41
Bsc4I	CCNNNNNNNGG	1 cut(s)	419
Bse118I	RCCGGY	1 cut(s)	311
Bse3DI	GCAATG	2 cut(s)	237, 393
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	2 cut(s)	321, 463
BseLI	CCNNNNNNNGG	1 cut(s)	419
BseMI	GCAATG	2 cut(s)	237, 393
BseMII	CTCAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	3 cut(s)	374, 403, 448
BshFI	GGCC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	240, 312
BslI	CCNNNNNNNGG	1 cut(s)	419
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	445
BspACI	CCGC	2 cut(s)	221, 338
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	1 cut(s)	64
BsrBI	CCGCTC	1 cut(s)	338
BsrDI	GCAATG	2 cut(s)	237, 393
BsrFI	RCCGGY	1 cut(s)	311
BssAI	RCCGGY	1 cut(s)	311
BssECI	CCNNGG	1 cut(s)	41
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	2 cut(s)	269, 396
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	321, 463
BstHHI	GCGC	1 cut(s)	362
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 425
BstNI	CCWGG	1 cut(s)	474
BstNSI	RCATGY	1 cut(s)	319
BstSCI	CCNGG	2 cut(s)	239, 472
BstSLI	GKGCMC	1 cut(s)	445
BstV1I	GCAGC	3 cut(s)	374, 403, 448
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	1 cut(s)	32
BtsCI	GGATG	2 cut(s)	321, 463
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	1 cut(s)	178
CaiI	CAGNNNCTG	1 cut(s)	419
CfoI	GCGC	1 cut(s)	362
Cfr10I	RCCGGY	1 cut(s)	311
Cfr13I	GGNCC	3 cut(s)	30, 161, 343
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	7 cut(s)	5, 32, 63, 154, 416, 480, 541
CviKI_1	RGCY	7 cut(s)	5, 32, 63, 154, 416, 480, 541
DdeI	CTNAG	1 cut(s)	72
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	161, 343
Eco57I	CTGAAG	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	1 cut(s)	319
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	228
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	363, 417, 462
FokI	GGATG	2 cut(s)	308, 470
Fsp4HI	GCNGC	3 cut(s)	363, 417, 462
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	363, 417, 462
GsuI	CTGGAG	1 cut(s)	396
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	2 cut(s)	240, 312
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	37
HpaII	CCGG	2 cut(s)	240, 312
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	45, 528
Hpy188III	TCNNGA	2 cut(s)	301, 499
Hpy8I	GTNNAC	1 cut(s)	343
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	2 cut(s)	269, 396
HpyCH4IV	ACGT	3 cut(s)	78, 451, 556
HpyCH4V	TGCA	4 cut(s)	95, 272, 428, 521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 425
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	3 cut(s)	78, 451, 556
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	374, 403, 448
LweI	GCATC	2 cut(s)	281, 448
MaeII	ACGT	3 cut(s)	78, 451, 556
MaeIII	GTNAC	2 cut(s)	215, 390
MbiI	CCGCTC	1 cut(s)	338
MboII	GAAGA	3 cut(s)	112, 295, 484
MfeI	CAATTG	2 cut(s)	405, 516
MhlI	GDGCHC	1 cut(s)	445
MluCI	AATT	4 cut(s)	96, 126, 405, 516
MlyI	GAGTC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	51, 67, 179, 350, 505
MroXI	GAANNNNTTC	1 cut(s)	153
MseI	TTAA	2 cut(s)	263, 537
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	2 cut(s)	240, 312
MspR9I	CCNGG	2 cut(s)	241, 474
MunI	CAATTG	2 cut(s)	405, 516
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	416, 425
NciI	CCSGG	1 cut(s)	241
NdeI	CATATG	1 cut(s)	142
NlaIII	CATG	1 cut(s)	319
NmuCI	GTSAC	1 cut(s)	390
NspI	RCATGY	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	153
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	3 cut(s)	364, 418, 463
PleI	GAGTC	1 cut(s)	45
PpsI	GAGTC	1 cut(s)	45
Ppu21I	YACGTR	1 cut(s)	557
PsiI	TTATAA	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	3 cut(s)	30, 161, 343
PstNI	CAGNNNCTG	1 cut(s)	419
PvuII	CAGCTG	1 cut(s)	416
SaqAI	TTAA	2 cut(s)	263, 537
SatI	GCNGC	3 cut(s)	363, 417, 462
Sau96I	GGNCC	3 cut(s)	30, 161, 343
SchI	GAGTC	1 cut(s)	46
ScrFI	CCNGG	2 cut(s)	241, 474
SduI	GDGCHC	1 cut(s)	445
SetI	ASST	6 cut(s)	65, 81, 418, 454, 475, 559
SfaNI	GCATC	2 cut(s)	281, 448
SinI	GGWCC	2 cut(s)	161, 343
Sse9I	AATT	4 cut(s)	96, 126, 405, 516
SsiI	CCGC	2 cut(s)	221, 338
StyD4I	CCNGG	2 cut(s)	239, 472
TaaI	ACNGT	2 cut(s)	269, 396
TaiI	ACGT	3 cut(s)	81, 454, 559
TaqI	TCGA	1 cut(s)	510
TasI	AATT	4 cut(s)	96, 126, 405, 516
Tru1I	TTAA	2 cut(s)	263, 537
Tru9I	TTAA	2 cut(s)	263, 537
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	3 cut(s)	362, 416, 461
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	2 cut(s)	310, 484
TspRI	CASTG	1 cut(s)	399
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	161, 343
XceI	RCATGY	1 cut(s)	319
XmnI	GAANNNNTTC	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.