Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

12580561 .. 12592555

Gene Structure 11995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00228240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCTTTATGGATTGCTGATAAGCATGAAATTGACACAATATTTGCTTCTCTAATTGGCGATATAAGTCAAATGGGGTATAGCATAAGGAAAGAATTCGTGTGGAACATGGCCTTCATATATGATTTCTTTGGAACTGCTAACAAGAAATTTCTTAGATTGGTATTAGAGCGTATGCTCAAGCATGAAGATGAATATGCTGCCTGCAATCAACCCCAGTTTAAGGTACATATATATTTTGGTGGGAAAACCCATAAGGTATTTTCTGGTTTTCAGTTCTCGATTGGGTTGAGCTGCGAACATAATCAAACAAGGGGTGATCATTTTTTGAATCAAAGAAAGCAAGCATGGCGGCGAGAGGATGAGGAGCACAGGGAGAGCTTGTTGAAGAAGGTGGAAGAGGAGAAGGCGTTGCAACGAGGCATTCCCGTTCGAAGGCTTGTGGCTATCCGGGGGATCGTGCTCTCTGCTGCGCTGCCAATATCGTCTCTATTTCCATTTCTTTATTTTATGATTAGGGATTTTCATATTGCAAAAAGAGATGAAGATATTGGCTTCTATGCTGGGTATGTAGGGTCTTCGTATATACTTGGAAGAGCACCGACTTCAGTTCCTCGGGGAATGGTGGCTGATCGCCGTGGTAGAAGACATGTGAGCATGTGTGAAGTTCAGATCTCCACTAGTACTGATGCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

232

Amino Acids

26.83

Weight (kDa)

9.24

Isoelectric Point (pI)

49.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	1 cut(s)	464
AcsI	RAATTY	2 cut(s)	95, 149
AcuI	CTGAAG	1 cut(s)	591
AfaI	GTAC	2 cut(s)	228, 685
AfiI	CCNNNNNNNGG	2 cut(s)	223, 435
AflIII	ACRYGT	1 cut(s)	649
AgsI	TTSAA	2 cut(s)	331, 388
AhlI	ACTAGT	1 cut(s)	680
AluBI	AGCT	2 cut(s)	294, 381
AluI	AGCT	2 cut(s)	294, 381
Alw21I	GWGCWC	3 cut(s)	372, 465, 601
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	615
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	4 cut(s)	200, 294, 470, 475
ApoI	RAATTY	2 cut(s)	95, 149
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	1 cut(s)	475
AsuC2I	CCSGG	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	433
AvaI	CYCGRG	1 cut(s)	615
BbsI	GAAGAC	2 cut(s)	570, 652
Bbv12I	GWGCWC	3 cut(s)	372, 465, 601
BbvI	GCAGC	4 cut(s)	187, 281, 457, 462
BceAI	ACGGC	1 cut(s)	621
BclI	TGATCA	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	492
BcuI	ACTAGT	1 cut(s)	680
BfaI	CTAG	1 cut(s)	681
BglII	AGATCT	1 cut(s)	672
BisI	GCNGC	5 cut(s)	201, 295, 353, 471, 476
BlsI	GCNGC	5 cut(s)	202, 296, 354, 472, 477
BmcAI	AGTACT	1 cut(s)	685
Bme1390I	CCNGG	1 cut(s)	452
BmeT110I	CYCGRG	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	452
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	1 cut(s)	679
BmuI	ACTGGG	1 cut(s)	211
BpiI	GAAGAC	2 cut(s)	570, 652
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	451, 614, 637
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 395, 398, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 435
Bse1I	ACTGG	1 cut(s)	217
BseDI	CCNNGG	3 cut(s)	451, 614, 637
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	2 cut(s)	223, 435
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	2 cut(s)	380, 416
BseXI	GCAGC	4 cut(s)	187, 281, 457, 462
BseYI	CCCAGC	1 cut(s)	563
BshFI	GGCC	1 cut(s)	113
BsiHKAI	GWGCWC	3 cut(s)	372, 465, 601
BsiHKCI	CYCGRG	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	451
BslI	CCNNNNNNNGG	2 cut(s)	223, 435
BsmAI	GTCTC	1 cut(s)	492
BsmBI	CGTCTC	1 cut(s)	492
BsmI	GAATGC	1 cut(s)	423
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	615
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	372, 465, 601
Bsp143I	GATC	4 cut(s)	319, 456, 631, 672
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	464
BspQI	GCTCTTC	1 cut(s)	589
BspT104I	TTCGAA	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	451, 614, 637
BssMI	GATC	4 cut(s)	319, 456, 631, 672
Bst6I	CTCTTC	2 cut(s)	393, 589
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	2 cut(s)	205, 345
BstDEI	CTNAG	1 cut(s)	155
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	4 cut(s)	322, 459, 634, 675
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	4 cut(s)	319, 456, 631, 672
BstMWI	GCNNNNNNNGC	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	653, 661
BstSCI	CCNGG	1 cut(s)	450
BstV1I	GCAGC	4 cut(s)	187, 281, 457, 462
BstV2I	GAAGAC	2 cut(s)	570, 652
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	113
BtgI	CCRYGG	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	367
Cac8I	GCNNGC	2 cut(s)	205, 345
CfoI	GCGC	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	227, 684
CviAII	CATG	7 cut(s)	26, 109, 185, 348, 650, 658, 696
CviJI	RGCY	8 cut(s)	5, 113, 294, 381, 439, 446, 555, 629
CviKI_1	RGCY	8 cut(s)	5, 113, 294, 381, 439, 446, 555, 629
CviQI	GTAC	2 cut(s)	227, 684
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	4 cut(s)	321, 458, 633, 674
DpnII	GATC	4 cut(s)	319, 456, 631, 672
Eam1104I	CTCTTC	2 cut(s)	393, 589
EarI	CTCTTC	2 cut(s)	393, 589
Eco57I	CTGAAG	1 cut(s)	591
Eco88I	CYCGRG	1 cut(s)	615
EcoRI	GAATTC	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	492
FaeI	CATG	7 cut(s)	29, 112, 188, 351, 653, 661, 699
FatI	CATG	7 cut(s)	25, 108, 184, 347, 649, 657, 695
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	5 cut(s)	201, 295, 353, 471, 476
FokI	GGATG	1 cut(s)	374
Fsp4HI	GCNGC	5 cut(s)	201, 295, 353, 471, 476
FspBI	CTAG	1 cut(s)	681
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	5 cut(s)	201, 295, 353, 471, 476
GsaI	CCCAGC	1 cut(s)	567
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	1 cut(s)	451
HhaI	GCGC	1 cut(s)	475
Hin1II	CATG	7 cut(s)	29, 112, 188, 351, 653, 661, 699
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HinfI	GANTC	1 cut(s)	331
HpaII	CCGG	1 cut(s)	451
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	1 cut(s)	672
Hpy188III	TCNNGA	1 cut(s)	280
HpyAV	CCTTC	4 cut(s)	124, 385, 400, 429
HpyCH4V	TGCA	4 cut(s)	207, 415, 533, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	349
HpyF3I	CTNAG	1 cut(s)	155
Hsp92II	CATG	7 cut(s)	29, 112, 188, 351, 653, 661, 699
HspAI	GCGC	1 cut(s)	473
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	319, 456, 631, 672
LguI	GCTCTTC	1 cut(s)	589
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	6 cut(s)	217, 230, 252, 358, 464, 549
Lsp1109I	GCAGC	4 cut(s)	187, 281, 457, 462
LweI	GCATC	1 cut(s)	679
MaeI	CTAG	1 cut(s)	681
MalI	GATC	4 cut(s)	321, 458, 633, 674
MboI	GATC	4 cut(s)	319, 456, 631, 672
MboII	GAAGA	7 cut(s)	200, 400, 410, 557, 570, 606, 657
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	3 cut(s)	372, 465, 601
MluCI	AATT	4 cut(s)	30, 54, 95, 149
MnlI	CCTC	5 cut(s)	352, 358, 394, 413, 624
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	1 cut(s)	222
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	1 cut(s)	451
MspR9I	CCNGG	1 cut(s)	452
Mva1269I	GAATGC	1 cut(s)	423
MwoI	GCNNNNNNNGC	1 cut(s)	349
NciI	CCSGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	319, 456, 631, 672
NlaIII	CATG	7 cut(s)	29, 112, 188, 351, 653, 661, 699
NspI	RCATGY	2 cut(s)	653, 661
NspV	TTCGAA	1 cut(s)	433
PciI	ACATGT	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	589
PctI	GAATGC	1 cut(s)	423
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	331
PkrI	GCNGC	5 cut(s)	202, 296, 354, 472, 477
PscI	ACATGT	1 cut(s)	649
PspFI	CCCAGC	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	672
RsaI	GTAC	2 cut(s)	228, 685
RsaNI	GTAC	2 cut(s)	227, 684
RseI	CAYNNNNRTG	1 cut(s)	189
SapI	GCTCTTC	1 cut(s)	589
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	5 cut(s)	201, 295, 353, 471, 476
Sau3AI	GATC	4 cut(s)	319, 456, 631, 672
ScaI	AGTACT	1 cut(s)	685
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	3 cut(s)	372, 465, 601
SetI	ASST	5 cut(s)	228, 261, 296, 383, 396
SfaNI	GCATC	1 cut(s)	679
SfuI	TTCGAA	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	680
Sse9I	AATT	4 cut(s)	30, 54, 95, 149
SsiI	CCGC	1 cut(s)	352
SspI	AATATT	1 cut(s)	42
SspMI	CTAG	1 cut(s)	681
StyD4I	CCNGG	1 cut(s)	450
TaqI	TCGA	2 cut(s)	281, 433
TasI	AATT	4 cut(s)	30, 54, 95, 149
TatI	WGTACW	1 cut(s)	683
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	4 cut(s)	200, 294, 470, 475
TspDTI	ATGAA	6 cut(s)	42, 106, 201, 207, 515, 558
XapI	RAATTY	2 cut(s)	95, 149
XceI	RCATGY	2 cut(s)	653, 661
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	681
ZrmI	AGTACT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.