Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

16393298 .. 16399342

Gene Structure 6045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g24560.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATGTACTTTCTGCCGGCAGAGAAATATCCCACTATTTTTTCCCCAGACTTTATATTCGGGAGGTTTCCGTACTTCTTACCTTGCCTTTGTATATCGATTTTTGAAGTCGGAGTAACCATTGCATGTTTCTGGCTTCCGGAAACCTTACACAATCACAATGAAAATGCCAGATTACATGATGGTTCCTTTGAAGCACTGGAGTCTGCATCCTGTGGGTCAGATGCAAATGAAATGAAACCAAAAACTGAAGAACAAATACCTAAAGAAAACCTCATGAAGAATTGGCCTTTAATATCATCAATCCTTGTTTATTGTGTTTTCTCACTCCATGACATGGCTTATTCAGAGATATTCTCATTATGGGCGGAGAGTCCTCGAAAGTTAGGGGGTTTGAGCTACACAACTGAGGATGTCGGTGAAATTCTAGCAATCTCAGGTCGTGGTCTTTTTGTCTTTCAAACTACTCTGTACCCGTATGTGGAAAAGATGCTTGGTCCTATAAGAATTGCTCGCATTGGAGGGGTTTTGACTATACCTCTTTTGTCAAGCTGCCCCTTTATAGCATTGTTGTCTGGACTTTCCCTCTCCGTGCTGTTAAATATTGCATCTCTGCTGAAAAATGTCATATCTATCATGATCGTCACTGGGCTTTTCATTCTCCAAAACAGAGCTGTGGTTTACTTGGGCACAAAAACGCCTGGATGCTTCCATTCTACCTGGTATCCAGATGGTTTTCTTCATCTTGAATTTGGTGGAGTTCCTTGCAGTTCTCATGACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

262

Amino Acids

29.06

Weight (kDa)

5.47

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	139
AciI	CCGC	1 cut(s)	368
AcsI	RAATTY	2 cut(s)	423, 749
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	3 cut(s)	8, 74, 473
AfiI	CCNNNNNNNGG	2 cut(s)	337, 481
AgsI	TTSAA	4 cut(s)	107, 194, 461, 749
AjnI	CCWGG	2 cut(s)	700, 719
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	399, 552, 674
AluI	AGCT	3 cut(s)	399, 552, 674
Aor13HI	TCCGGA	1 cut(s)	139
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	552
ApoI	RAATTY	2 cut(s)	423, 749
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
AspS9I	GGNCC	1 cut(s)	497
AsuHPI	GGTGA	1 cut(s)	431
AvaII	GGWCC	1 cut(s)	497
BaeGI	GKGCMC	1 cut(s)	692
BarI	GAAGNNNNNNTAC	2 cut(s)	243, 275
BbvI	GCAGC	1 cut(s)	539
BccI	CCATC	2 cut(s)	176, 725
BciT130I	CCWGG	2 cut(s)	702, 721
BciVI	GTATCC	1 cut(s)	735
BfaI	CTAG	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	735
BisI	GCNGC	1 cut(s)	553
BlsI	GCNGC	1 cut(s)	554
Bme1390I	CCNGG	2 cut(s)	702, 721
Bme18I	GGWCC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	1 cut(s)	187
BmrFI	CCNGG	2 cut(s)	702, 721
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	5 cut(s)	214, 218, 480, 617, 695
BmuI	ACTGGG	1 cut(s)	657
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	98
BsaWI	WCCGGW	1 cut(s)	139
Bsc4I	CCNNNNNNNGG	2 cut(s)	337, 481
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	204, 652
Bse3DI	GCAATG	1 cut(s)	120
BseAI	TCCGGA	1 cut(s)	139
BseBI	CCWGG	2 cut(s)	702, 721
BseCI	ATCGAT	1 cut(s)	98
BseGI	GGATG	3 cut(s)	209, 418, 710
BseLI	CCNNNNNNNGG	2 cut(s)	337, 481
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	2 cut(s)	399, 450
BseNI	ACTGG	2 cut(s)	204, 652
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	539
BshFI	GGCC	1 cut(s)	289
BshVI	ATCGAT	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	17, 140
BslI	CCNNNNNNNGG	2 cut(s)	337, 481
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp13I	TCCGGA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	639
BspACI	CCGC	1 cut(s)	368
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	400, 449
BspDI	ATCGAT	1 cut(s)	98
BspEI	TCCGGA	1 cut(s)	139
BspHI	TCATGA	3 cut(s)	276, 636, 775
BspLI	GGNNCC	1 cut(s)	187
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	204, 652
BssAI	RCCGGY	1 cut(s)	16
BssMI	GATC	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	702, 721
BstC8I	GCNNGC	2 cut(s)	18, 514
BstDEI	CTNAG	2 cut(s)	408, 436
BstF5I	GGATG	3 cut(s)	209, 418, 710
BstKTI	GATC	1 cut(s)	642
BstMBI	GATC	1 cut(s)	639
BstNI	CCWGG	2 cut(s)	702, 721
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	2 cut(s)	700, 719
BstSLI	GKGCMC	1 cut(s)	692
BstV1I	GCAGC	1 cut(s)	539
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	735
BsuRI	GGCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	98
BtsCI	GGATG	3 cut(s)	209, 418, 710
BtsIMutI	CAGTG	2 cut(s)	197, 645
Cac8I	GCNNGC	2 cut(s)	18, 514
CciI	TCATGA	3 cut(s)	276, 636, 775
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	497
ClaI	ATCGAT	1 cut(s)	98
CsiI	ACCWGGT	1 cut(s)	719
Csp6I	GTAC	3 cut(s)	7, 73, 472
CviAII	CATG	7 cut(s)	126, 179, 277, 332, 337, 637, 776
CviJI	RGCY	7 cut(s)	136, 289, 341, 399, 552, 652, 674
CviKI_1	RGCY	7 cut(s)	136, 289, 341, 399, 552, 652, 674
CviQI	GTAC	3 cut(s)	7, 73, 472
DdeI	CTNAG	2 cut(s)	408, 436
DpnI	GATC	1 cut(s)	641
DpnII	GATC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	497
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	700, 719
FaeI	CATG	7 cut(s)	129, 182, 280, 335, 340, 640, 779
FatI	CATG	7 cut(s)	125, 178, 276, 331, 336, 636, 775
Fnu4HI	GCNGC	1 cut(s)	553
FokI	GGATG	3 cut(s)	196, 425, 717
Fsp4HI	GCNGC	1 cut(s)	553
FspBI	CTAG	1 cut(s)	428
GluI	GCNGC	1 cut(s)	553
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	2 cut(s)	17, 140
Hin1II	CATG	7 cut(s)	129, 182, 280, 335, 340, 640, 779
HinfI	GANTC	2 cut(s)	203, 373
HpaII	CCGG	2 cut(s)	17, 140
HphI	GGTGA	1 cut(s)	431
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	3 cut(s)	113, 223, 349
Hpy188III	TCNNGA	8 cut(s)	61, 140, 277, 576, 637, 728, 746, 776
Hpy8I	GTNNAC	1 cut(s)	682
HpyCH4V	TGCA	5 cut(s)	125, 209, 227, 608, 768
HpyF3I	CTNAG	2 cut(s)	408, 436
Hsp92II	CATG	7 cut(s)	129, 182, 280, 335, 340, 640, 779
Kpn2I	TCCGGA	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	639
Lsp1109I	GCAGC	1 cut(s)	539
LweI	GCATC	5 cut(s)	214, 218, 480, 617, 695
MabI	ACCWGGT	1 cut(s)	719
MaeI	CTAG	1 cut(s)	428
MaeIII	GTNAC	2 cut(s)	115, 643
MalI	GATC	1 cut(s)	641
MboI	GATC	1 cut(s)	639
MboII	GAAGA	3 cut(s)	263, 292, 731
MhlI	GDGCHC	1 cut(s)	692
MluCI	AATT	4 cut(s)	283, 423, 507, 749
MlyI	GAGTC	2 cut(s)	212, 382
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	7 cut(s)	57, 284, 387, 403, 515, 549, 596
MroI	TCCGGA	1 cut(s)	139
MroNI	GCCGGC	1 cut(s)	16
MseI	TTAA	3 cut(s)	293, 599, 784
MspI	CCGG	2 cut(s)	17, 140
MspR9I	CCNGG	2 cut(s)	702, 721
MvaI	CCWGG	2 cut(s)	702, 721
NaeI	GCCGGC	1 cut(s)	18
NdeII	GATC	1 cut(s)	639
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	7 cut(s)	129, 182, 280, 335, 340, 640, 779
NlaIV	GGNNCC	1 cut(s)	187
NmuCI	GTSAC	1 cut(s)	643
NspI	RCATGY	1 cut(s)	129
PagI	TCATGA	3 cut(s)	276, 636, 775
PdiI	GCCGGC	1 cut(s)	18
PflMI	CCANNNNNTGG	1 cut(s)	337
PkrI	GCNGC	1 cut(s)	554
PleI	GAGTC	2 cut(s)	211, 381
PpsI	GAGTC	2 cut(s)	211, 381
Psp6I	CCWGG	2 cut(s)	700, 719
PspGI	CCWGG	2 cut(s)	700, 719
PspN4I	GGNNCC	1 cut(s)	187
PspPI	GGNCC	1 cut(s)	497
RsaI	GTAC	3 cut(s)	8, 74, 473
RsaNI	GTAC	3 cut(s)	7, 73, 472
SaqAI	TTAA	3 cut(s)	293, 599, 784
SatI	GCNGC	1 cut(s)	553
Sau3AI	GATC	1 cut(s)	639
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	2 cut(s)	212, 382
ScrFI	CCNGG	2 cut(s)	702, 721
SduI	GDGCHC	1 cut(s)	692
SexAI	ACCWGGT	1 cut(s)	719
SfaNI	GCATC	5 cut(s)	214, 218, 480, 617, 695
SinI	GGWCC	1 cut(s)	497
Sse9I	AATT	4 cut(s)	283, 423, 507, 749
SsiI	CCGC	1 cut(s)	368
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	1 cut(s)	428
StyD4I	CCNGG	2 cut(s)	700, 719
TaqI	TCGA	2 cut(s)	98, 379
TasI	AATT	4 cut(s)	283, 423, 507, 749
TatI	WGTACW	1 cut(s)	6
Tru1I	TTAA	3 cut(s)	293, 599, 784
Tru9I	TTAA	3 cut(s)	293, 599, 784
TscAI	CASTG	2 cut(s)	204, 652
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	1 cut(s)	552
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	6 cut(s)	177, 246, 251, 293, 646, 731
TspGWI	ACGGA	2 cut(s)	60, 580
TspRI	CASTG	2 cut(s)	204, 652
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	497
XapI	RAATTY	2 cut(s)	423, 749
XceI	RCATGY	1 cut(s)	129
XspI	CTAG	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.