Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Reverse (-)

14310284 .. 14311426

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0088100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGATTTCCGAAAGATCCAAGCTTCTTAAAACTTCATTATCTGAAACCCTTATCCGCTTCTATCCCTTTGCTGGAAGAATATTTAGCCACAATAACATTCTTTCAATCTGTTGCAATGACAATGGGGCGGCATTTATCCAAACTCGTGTCAATTGTCCCATATCAAAGGTTTTGGAAAAGCACCATCCTCAGACACTAAATCAATTACTTCCCAAAGACATAGAATCGACAATTGAAAGCACAGGCTGTCTCCTATTAATTCAAGCCAACTTCTTTGAATGTGGTGGACTTGCAATTGGGGTTAGCATTTCACATAAGATCGCGGATGGCTTCACACTCGGAACATTCATTGGTAACTGGGCCGCAATGAGCCTTGGCTCTGATATAGCGGCTTTTCCAGCTGCAGAGTTTGGTATTCCGACATCTCTTTACCCCCCACAAGATTTGGTCGTCAACTCATTGTCAACTTCCATGAAACACGATAATAATGAAGCTTATGTAACAGGGAGATTTGTATTTGATGCCTCAAATATTGTACGTCTCAAGTCTAAAGCCACTAGTGCCACCGTTCCAAATCCAACTCGTGTTGAAGTAGTGTCAACACTTATTTGGAAATGTGCAATGGAAGCTTCAAGATCAAACTTGGGTTTTACAAGGCCGGCCCAGCTGTTTCTAGCAGCAAACATGCGGAAAGTATTGGAGCATCCCACTTTAATGGGAAATCTTATAGGAGTTGTACATATAGTAAAGACACGAGAAAGTGATGCAACTCTTCAAAGCTTGGTTGCTATACTACGGGAAACCATTAAGGAATTTAAAGTGAAATATTGTAATGGAGTTAGTGGGGATGATATCTGCCAATATTTTAATGAACACAGAGATTTAATGGGTAAGGATGATATAAATAGCTATGGAATTACCAGTTGGTGCAGGTTTGGCTTCTATGAAGCTAATTTTGGATGGGGAAAGCCATCTTGGGTCACTAATCCAGGTATGCCATTCAAGAATGTAATTGTATTGATTGACACAAAAGATGGTGAAGGCATGGAAGCGATCGTGAGTTTTAAAGAAAAAGACATGGCTGTAATTGAAACCAATAAGGAGCTGCTTGCATATGCTTCTCTTAATCCCACTGTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

380

Amino Acids

41.92

Weight (kDa)

6.71

Isoelectric Point (pI)

29.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 369	1e-71	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	921
AccII	CGCG	1 cut(s)	323
AciI	CCGC	6 cut(s)	55, 128, 323, 363, 389, 688
AclWI	GGATC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	812
AfaI	GTAC	2 cut(s)	537, 738
AfiI	CCNNNNNNNGG	1 cut(s)	71
AgsI	TTSAA	9 cut(s)	105, 236, 263, 278, 590, 633, 776, 1003, 1091
AhlI	ACTAGT	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	988
AjuI	GAANNNNNNNTTGG	6 cut(s)	907, 939, 939, 958, 971, 990
AluBI	AGCT	9 cut(s)	22, 401, 494, 629, 667, 780, 909, 950, 1105
AluI	AGCT	9 cut(s)	22, 401, 494, 629, 667, 780, 909, 950, 1105
Alw26I	GTCTC	2 cut(s)	254, 545
AlwI	GGATC	1 cut(s)	9
AoxI	GGCC	3 cut(s)	360, 656, 660
ApeKI	GCWGC	3 cut(s)	401, 677, 1105
ApoI	RAATTY	1 cut(s)	812
AseI	ATTAAT	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	360, 661
AsuHPI	GGTGA	1 cut(s)	1049
BauI	CACGAG	3 cut(s)	144, 582, 753
BbvI	GCAGC	3 cut(s)	388, 689, 1092
BccI	CCATC	5 cut(s)	192, 320, 954, 979, 1028
BciT130I	CCWGG	1 cut(s)	990
BcoDI	GTCTC	2 cut(s)	254, 545
BcuI	ACTAGT	1 cut(s)	557
BfaI	CTAG	2 cut(s)	558, 674
BfmI	CTRYAG	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	921
BisI	GCNGC	6 cut(s)	129, 363, 390, 402, 678, 1106
BlsI	GCNGC	6 cut(s)	130, 364, 391, 403, 679, 1107
Bme1390I	CCNGG	1 cut(s)	990
BmgT120I	GGNCC	2 cut(s)	360, 661
BmrFI	CCNGG	1 cut(s)	990
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	3 cut(s)	511, 712, 754
BmuI	ACTGGG	1 cut(s)	367
BpuEI	CTTGAG	1 cut(s)	527
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	2 cut(s)	362, 921
Bse3DI	GCAATG	3 cut(s)	121, 372, 627
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	6 cut(s)	184, 331, 703, 853, 901, 965
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMI	GCAATG	3 cut(s)	121, 372, 627
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	362, 921
BseXI	GCAGC	3 cut(s)	388, 689, 1092
BseYI	CCCAGC	1 cut(s)	663
BsgI	GTGCAG	1 cut(s)	949
Bsh1236I	CGCG	1 cut(s)	323
Bsh1285I	CGRYCG	1 cut(s)	1056
BshFI	GGCC	3 cut(s)	362, 658, 662
BsiEI	CGRYCG	1 cut(s)	1056
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	254, 545
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	3 cut(s)	362, 658, 662
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	14, 318, 635, 1053
BspACI	CCGC	6 cut(s)	55, 128, 323, 363, 389, 688
BspANI	GGCC	3 cut(s)	362, 658, 662
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	323
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	921
BspPI	GGATC	1 cut(s)	9
BsrDI	GCAATG	3 cut(s)	121, 372, 627
BsrFI	RCCGGY	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	2 cut(s)	362, 921
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	4 cut(s)	14, 318, 635, 1053
BssSI	CACGAG	3 cut(s)	144, 582, 753
BssT1I	CCWWGG	1 cut(s)	373
Bst2BI	CACGAG	3 cut(s)	144, 582, 753
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	2 cut(s)	568, 1135
Bst6I	CTCTTC	1 cut(s)	777
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	2 cut(s)	660, 1110
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	6 cut(s)	184, 331, 703, 853, 901, 965
BstFNI	CGCG	1 cut(s)	323
BstKTI	GATC	4 cut(s)	17, 321, 638, 1056
BstMAI	GTCTC	2 cut(s)	254, 545
BstMBI	GATC	4 cut(s)	14, 318, 635, 1053
BstMCI	CGRYCG	1 cut(s)	1056
BstMWI	GCNNNNNNNGC	5 cut(s)	398, 560, 626, 664, 936
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	688
BstSCI	CCNGG	1 cut(s)	988
BstSFI	CTRYAG	1 cut(s)	402
BstUI	CGCG	1 cut(s)	323
BstV1I	GCAGC	3 cut(s)	388, 689, 1092
BstX2I	RGATCY	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	3 cut(s)	362, 658, 662
BtsCI	GGATG	6 cut(s)	184, 331, 703, 853, 901, 965
BtsIMutI	CAGTG	1 cut(s)	1131
BveI	ACCTGC	1 cut(s)	921
Cac8I	GCNNGC	2 cut(s)	660, 1110
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	360, 661
Csp6I	GTAC	2 cut(s)	536, 737
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	4 cut(s)	472, 685, 1045, 1078
CviQI	GTAC	2 cut(s)	536, 737
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	4 cut(s)	16, 320, 637, 1055
DpnII	GATC	4 cut(s)	14, 318, 635, 1053
DraI	TTTAAA	2 cut(s)	817, 1066
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	853
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	4 cut(s)	475, 688, 1048, 1081
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	4 cut(s)	471, 684, 1044, 1077
FauNDI	CATATG	1 cut(s)	1114
Fnu4HI	GCNGC	6 cut(s)	129, 363, 390, 402, 678, 1106
FokI	GGATG	6 cut(s)	171, 338, 690, 860, 908, 972
FseI	GGCCGGCC	1 cut(s)	662
Fsp4HI	GCNGC	6 cut(s)	129, 363, 390, 402, 678, 1106
FspBI	CTAG	2 cut(s)	558, 674
GluI	GCNGC	6 cut(s)	129, 363, 390, 402, 678, 1106
GsaI	CCCAGC	1 cut(s)	667
HaeIII	GGCC	3 cut(s)	362, 658, 662
HapII	CCGG	1 cut(s)	659
Hin1II	CATG	4 cut(s)	475, 688, 1048, 1081
HincII	GTYRAC	3 cut(s)	454, 465, 600
HindII	GTYRAC	3 cut(s)	454, 465, 600
HindIII	AAGCTT	4 cut(s)	20, 492, 627, 778
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	1 cut(s)	1049
Hpy166II	GTNNAC	4 cut(s)	287, 454, 465, 600
Hpy188I	TCNGA	6 cut(s)	10, 43, 192, 341, 382, 420
Hpy188III	TCNNGA	3 cut(s)	633, 1003, 1057
Hpy8I	GTNNAC	4 cut(s)	287, 454, 465, 600
HpyAV	CCTTC	1 cut(s)	1034
HpyCH4III	ACNGT	2 cut(s)	568, 1135
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	7 cut(s)	114, 293, 404, 620, 767, 930, 1112
HpyF10VI	GCNNNNNNNGC	5 cut(s)	398, 560, 626, 664, 936
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	4 cut(s)	475, 688, 1048, 1081
KroI	GCCGGC	1 cut(s)	658
KroNI	GCCGGC	1 cut(s)	660
Kzo9I	GATC	4 cut(s)	14, 318, 635, 1053
LmnI	GCTCC	2 cut(s)	700, 1102
Lsp1109I	GCAGC	3 cut(s)	388, 689, 1092
LweI	GCATC	3 cut(s)	511, 712, 754
MaeI	CTAG	2 cut(s)	558, 674
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	3 cut(s)	353, 499, 979
MalI	GATC	4 cut(s)	16, 320, 637, 1055
MboI	GATC	4 cut(s)	14, 318, 635, 1053
MboII	GAAGA	2 cut(s)	87, 764
MfeI	CAATTG	3 cut(s)	151, 231, 294
MflI	RGATCY	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	443, 602
MnlI	CCTC	2 cut(s)	198, 535
MroNI	GCCGGC	1 cut(s)	658
MseI	TTAA	9 cut(s)	27, 257, 713, 807, 816, 867, 884, 1065, 1125
MslI	CAYNNNNRTG	1 cut(s)	713
MspA1I	CMGCKG	2 cut(s)	401, 667
MspI	CCGG	1 cut(s)	659
MspR9I	CCNGG	1 cut(s)	990
MunI	CAATTG	3 cut(s)	151, 231, 294
MvaI	CCWGG	1 cut(s)	990
MvnI	CGCG	1 cut(s)	323
MwoI	GCNNNNNNNGC	5 cut(s)	398, 560, 626, 664, 936
NaeI	GCCGGC	1 cut(s)	660
NdeI	CATATG	1 cut(s)	1114
NdeII	GATC	4 cut(s)	14, 318, 635, 1053
NgoMIV	GCCGGC	1 cut(s)	658
NlaIII	CATG	4 cut(s)	475, 688, 1048, 1081
NmuCI	GTSAC	1 cut(s)	979
NspI	RCATGY	1 cut(s)	688
PdiI	GCCGGC	1 cut(s)	660
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	6 cut(s)	130, 364, 391, 403, 679, 1107
Ple19I	CGATCG	1 cut(s)	1056
PshBI	ATTAAT	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	988
PspFI	CCCAGC	1 cut(s)	663
PspGI	CCWGG	1 cut(s)	988
PspPI	GGNCC	2 cut(s)	360, 661
PstI	CTGCAG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	14
PvuI	CGATCG	1 cut(s)	1056
PvuII	CAGCTG	2 cut(s)	401, 667
RigI	GGCCGGCC	1 cut(s)	662
RsaI	GTAC	2 cut(s)	537, 738
RsaNI	GTAC	2 cut(s)	536, 737
RseI	CAYNNNNRTG	1 cut(s)	713
SaqAI	TTAA	9 cut(s)	27, 257, 713, 807, 816, 867, 884, 1065, 1125
SatI	GCNGC	6 cut(s)	129, 363, 390, 402, 678, 1106
Sau3AI	GATC	4 cut(s)	14, 318, 635, 1053
Sau96I	GGNCC	2 cut(s)	360, 661
ScrFI	CCNGG	1 cut(s)	990
SfaNI	GCATC	3 cut(s)	511, 712, 754
SfcI	CTRYAG	1 cut(s)	402
SmiMI	CAYNNNNRTG	1 cut(s)	713
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
SpeI	ACTAGT	1 cut(s)	557
SsiI	CCGC	6 cut(s)	55, 128, 323, 363, 389, 688
SspI	AATATT	4 cut(s)	81, 532, 827, 863
SspMI	CTAG	2 cut(s)	558, 674
StyD4I	CCNGG	1 cut(s)	988
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	2 cut(s)	568, 1135
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	1 cut(s)	227
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	3 cut(s)	131, 365, 392
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	9 cut(s)	27, 257, 713, 807, 816, 867, 884, 1065, 1125
Tru9I	TTAA	9 cut(s)	27, 257, 713, 807, 816, 867, 884, 1065, 1125
TscAI	CASTG	1 cut(s)	1138
TseFI	GTSAC	1 cut(s)	979
TseI	GCWGC	3 cut(s)	401, 677, 1105
Tsp45I	GTSAC	1 cut(s)	979
TspDTI	ATGAA	6 cut(s)	24, 337, 488, 504, 885, 960
TspRI	CASTG	1 cut(s)	1138
VspI	ATTAAT	1 cut(s)	257
XapI	RAATTY	1 cut(s)	812
XceI	RCATGY	1 cut(s)	688
XspI	CTAG	2 cut(s)	558, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.