Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Reverse (-)

20276289 .. 20290230

Gene Structure 13942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG110200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTTGGAAGAGTACTGACTTCAGTTTTCTGGGGAATAGTGGCTGATCGCTATGGTCGAAAACCTGTCATAATAATAGGGACTATTTCAGTGGTTGTTTTCAATACTCTCTTTGGACTCAGTGTAAATTTTTGGATGGCCATCATTACAAGATTTCTTCTTGGAAGTTTAAATGGTTTGCTTGGACCAATAAAGGCATATGCAAGTGAAGTCTTTCGGGAAGAACATCAAGCTTTAGGAATGTCAACAGTTAGCACAGCATGGGGTATCGGATTGATCATTGGCCCAGCTTTGGGAGGATTCTTTGCCCAGCCAGCAGAGAAATATCCCACTATATTTTCTGCAGACTCTGTATTTGGGAGGTTTCCATACTTCTTGCCTTGCCTTTGTATATCGCTTTTTGCACTTGGAATAACCATTGCATGTTTCTGGCTTCCGGAAACTTTACACAATCACAATGAAAATGACAGATTACATGATGATTCCTTTGAAGCATTGGAAACTGCATCATGTGGGTCAGATTCAAATGAAATAAAACAAAAAACTGAAGAACAAATACCTAAACAAAGCCTCATGAAGAATTGGCCGTTAATGTCATCGATCATCGTTTATTGTTTTTTCTCACTCCATGACATGGCTTATACAGAGATATTCTCATTATGGGCCGAGAGTCCTCGAAAGTTAGGGGGTTTGAGCTATTCAACTGAGGATGTTGGTGAAGTTCTTGCAATTTCAGGTTTTGGTCTTTTTGTCTTTCAAATTACTCTGTACCCGTATGTGGAAAAGATGCTGGGTCCTGTAAGAATTGCTCGCATTGGAGGGGTTTTGACTATACCTCTTTTGTCAAGCTACCCCTTTATAGCATTGTTATCCGGGTTCTCCCTCTCCGTGCTGTTAAATATTGCATCTCTGCTGAAAAATGTCATGTCTATCACGATCGTCACTGGTCTGTTCATTCTCCAAAACAGAGCTGTGGACCAACATCAAAGAGGTGCTGCTAATGGAATTGCTATGACTGCAATGTCTTTGTTCAAGGCAGTTGGTCCAGCTGCTGGTGGTGCAGTGTTTTCTTGGGCACAAAAACGCCTGGATGCTTCCATTCTACCTGGTATCTCGATGGTTTTCTTCATCTTGAATCTGGTGGAATTAATTGCAGTTCTCATGACATTTAAACCATTTCTTACTGTACGTGATGATAGACAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

402

Amino Acids

44.1

Weight (kDa)

6.6

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	1 - 349	5.4e-32	Major Facilitator Superfamily
Sugar_tr	PF00083	1 - 185	4.4e-12	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1021
AccB7I	CCANNNNNTGG	2 cut(s)	634, 1052
AccIII	TCCGGA	1 cut(s)	436
AcoI	YGGCCR	2 cut(s)	138, 584
AcsI	RAATTY	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	6, 567
AfaI	GTAC	3 cut(s)	15, 770, 1188
AfiI	CCNNNNNNNGG	5 cut(s)	292, 293, 634, 778, 1052
AgsI	TTSAA	7 cut(s)	103, 491, 525, 702, 758, 1033, 1135
AjnI	CCWGG	2 cut(s)	1086, 1105
AluBI	AGCT	6 cut(s)	233, 290, 696, 849, 971, 1049
AluI	AGCT	6 cut(s)	233, 290, 696, 849, 971, 1049
AlwNI	CAGNNNCTG	2 cut(s)	350, 1052
Aor13HI	TCCGGA	1 cut(s)	436
AoxI	GGCC	4 cut(s)	138, 283, 584, 663
ApeKI	GCWGC	2 cut(s)	995, 1049
ApoI	RAATTY	1 cut(s)	127
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AseI	ATTAAT	1 cut(s)	1148
Asp700I	GAANNNNTTC	1 cut(s)	213
AspS9I	GGNCC	6 cut(s)	185, 284, 663, 794, 976, 1043
AsuC2I	CCSGG	1 cut(s)	874
AsuHPI	GGTGA	1 cut(s)	728
AvaII	GGWCC	4 cut(s)	185, 794, 976, 1043
BaeGI	GKGCMC	1 cut(s)	1078
BalI	TGGCCA	1 cut(s)	140
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BbvI	GCAGC	2 cut(s)	982, 1036
BccI	CCATC	3 cut(s)	130, 149, 1111
BceAI	ACGGC	1 cut(s)	571
BciT130I	CCWGG	2 cut(s)	1088, 1107
BclI	TGATCA	1 cut(s)	276
BcnI	CCSGG	1 cut(s)	874
BfmI	CTRYAG	1 cut(s)	342
BisI	GCNGC	2 cut(s)	996, 1050
BlsI	GCNGC	2 cut(s)	997, 1051
BmcAI	AGTACT	1 cut(s)	15
Bme1390I	CCNGG	3 cut(s)	874, 1088, 1107
Bme18I	GGWCC	4 cut(s)	185, 794, 976, 1043
BmgT120I	GGNCC	6 cut(s)	185, 284, 663, 794, 976, 1043
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	3 cut(s)	874, 1088, 1107
BmsI	GCATC	4 cut(s)	515, 777, 914, 1081
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpuMI	CCSGG	1 cut(s)	874
Bsa29I	ATCGAT	1 cut(s)	599
BsaAI	YACGTR	1 cut(s)	1190
BsaBI	GATNNNNATC	1 cut(s)	140
BsaWI	WCCGGW	1 cut(s)	436
Bsc4I	CCNNNNNNNGG	5 cut(s)	292, 293, 634, 778, 1052
Bse1I	ACTGG	1 cut(s)	949
Bse3DI	GCAATG	2 cut(s)	417, 1026
Bse8I	GATNNNNATC	1 cut(s)	140
BseAI	TCCGGA	1 cut(s)	436
BseBI	CCWGG	2 cut(s)	1088, 1107
BseCI	ATCGAT	1 cut(s)	599
BseGI	GGATG	3 cut(s)	141, 715, 1096
BseJI	GATNNNNATC	1 cut(s)	140
BseLI	CCNNNNNNNGG	5 cut(s)	292, 293, 634, 778, 1052
BseMI	GCAATG	2 cut(s)	417, 1026
BseMII	CTCAG	2 cut(s)	133, 696
BseNI	ACTGG	1 cut(s)	949
BseSI	GKGCMC	1 cut(s)	1078
BseXI	GCAGC	2 cut(s)	982, 1036
BseYI	CCCAGC	3 cut(s)	286, 309, 790
BsgI	GTGCAG	1 cut(s)	1080
Bsh1285I	CGRYCG	1 cut(s)	939
BshFI	GGCC	4 cut(s)	140, 285, 586, 665
BshVI	ATCGAT	1 cut(s)	599
BsiEI	CGRYCG	1 cut(s)	939
BsiSI	CCGG	2 cut(s)	437, 873
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	5 cut(s)	292, 293, 634, 778, 1052
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	140, 285, 586, 665
Bsp1286I	GDGCHC	1 cut(s)	1078
Bsp13I	TCCGGA	1 cut(s)	436
Bsp143I	GATC	4 cut(s)	46, 276, 600, 936
BspANI	GGCC	4 cut(s)	140, 285, 586, 665
BspCNI	CTCAG	2 cut(s)	132, 697
BspDI	ATCGAT	1 cut(s)	599
BspEI	TCCGGA	1 cut(s)	436
BspHI	TCATGA	2 cut(s)	573, 1161
BspLI	GGNNCC	1 cut(s)	795
BspMAI	CTGCAG	1 cut(s)	346
BsrDI	GCAATG	2 cut(s)	417, 1026
BsrI	ACTGG	1 cut(s)	949
BssMI	GATC	4 cut(s)	46, 276, 600, 936
Bst2UI	CCWGG	2 cut(s)	1088, 1107
Bst4CI	ACNGT	2 cut(s)	250, 1186
Bst6I	CTCTTC	1 cut(s)	4
BstBAI	YACGTR	1 cut(s)	1190
BstC8I	GCNNGC	2 cut(s)	315, 811
BstDEI	CTNAG	2 cut(s)	119, 705
BstF5I	GGATG	3 cut(s)	141, 715, 1096
BstKTI	GATC	4 cut(s)	49, 279, 603, 939
BstMBI	GATC	4 cut(s)	46, 276, 600, 936
BstMCI	CGRYCG	1 cut(s)	939
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 1016, 1058
BstNI	CCWGG	2 cut(s)	1088, 1107
BstNSI	RCATGY	1 cut(s)	426
BstSCI	CCNGG	3 cut(s)	872, 1086, 1105
BstSFI	CTRYAG	1 cut(s)	342
BstSLI	GKGCMC	1 cut(s)	1078
BstV1I	GCAGC	2 cut(s)	982, 1036
Bsu15I	ATCGAT	1 cut(s)	599
BsuRI	GGCC	4 cut(s)	140, 285, 586, 665
BsuTUI	ATCGAT	1 cut(s)	599
BtsCI	GGATG	3 cut(s)	141, 715, 1096
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	4 cut(s)	96, 127, 942, 1068
Cac8I	GCNNGC	2 cut(s)	315, 811
CaiI	CAGNNNCTG	2 cut(s)	350, 1052
CciI	TCATGA	2 cut(s)	573, 1161
Cfr13I	GGNCC	6 cut(s)	185, 284, 663, 794, 976, 1043
ClaI	ATCGAT	1 cut(s)	599
CsiI	ACCWGGT	1 cut(s)	1105
Csp6I	GTAC	3 cut(s)	14, 769, 1187
CviAII	CATG	9 cut(s)	261, 423, 476, 510, 574, 629, 634, 925, 1162
CviQI	GTAC	3 cut(s)	14, 769, 1187
DdeI	CTNAG	2 cut(s)	119, 705
DpnI	GATC	4 cut(s)	48, 278, 602, 938
DpnII	GATC	4 cut(s)	46, 276, 600, 936
DraI	TTTAAA	2 cut(s)	171, 1171
DrdI	GACNNNNNNGTC	1 cut(s)	1021
DseDI	GACNNNNNNGTC	1 cut(s)	1021
EaeI	YGGCCR	2 cut(s)	138, 584
Eam1104I	CTCTTC	1 cut(s)	4
EarI	CTCTTC	1 cut(s)	4
Eco47I	GGWCC	4 cut(s)	185, 794, 976, 1043
Eco57I	CTGAAG	2 cut(s)	6, 567
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	2 cut(s)	1086, 1105
FaeI	CATG	9 cut(s)	264, 426, 479, 513, 577, 632, 637, 928, 1165
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	9 cut(s)	260, 422, 475, 509, 573, 628, 633, 924, 1161
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	2 cut(s)	996, 1050
FokI	GGATG	3 cut(s)	148, 722, 1103
Fsp4HI	GCNGC	2 cut(s)	996, 1050
GluI	GCNGC	2 cut(s)	996, 1050
GsaI	CCCAGC	3 cut(s)	290, 313, 794
HaeIII	GGCC	4 cut(s)	140, 285, 586, 665
HapII	CCGG	2 cut(s)	437, 873
Hin1II	CATG	9 cut(s)	264, 426, 479, 513, 577, 632, 637, 928, 1165
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	7 cut(s)	117, 300, 347, 482, 521, 670, 1135
HpaII	CCGG	2 cut(s)	437, 873
HphI	GGTGA	1 cut(s)	728
Hpy166II	GTNNAC	2 cut(s)	246, 976
Hpy188I	TCNGA	2 cut(s)	272, 520
Hpy188III	TCNNGA	7 cut(s)	218, 437, 574, 934, 1114, 1132, 1162
Hpy8I	GTNNAC	2 cut(s)	246, 976
HpyCH4III	ACNGT	2 cut(s)	250, 1186
HpyCH4IV	ACGT	1 cut(s)	1189
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 1016, 1058
HpyF3I	CTNAG	2 cut(s)	119, 705
HpySE526I	ACGT	1 cut(s)	1189
Hsp92II	CATG	9 cut(s)	264, 426, 479, 513, 577, 632, 637, 928, 1165
Kpn2I	TCCGGA	1 cut(s)	436
Ksp22I	TGATCA	1 cut(s)	276
Kzo9I	GATC	4 cut(s)	46, 276, 600, 936
Lsp1109I	GCAGC	2 cut(s)	982, 1036
LweI	GCATC	4 cut(s)	515, 777, 914, 1081
MabI	ACCWGGT	1 cut(s)	1105
MaeII	ACGT	1 cut(s)	1189
MaeIII	GTNAC	1 cut(s)	940
MalI	GATC	4 cut(s)	48, 278, 602, 938
MboI	GATC	4 cut(s)	46, 276, 600, 936
MboII	GAAGA	6 cut(s)	21, 149, 233, 560, 589, 1117
MhlI	GDGCHC	1 cut(s)	1078
MlsI	TGGCCA	1 cut(s)	140
MluCI	AATT	8 cut(s)	127, 580, 729, 759, 804, 1005, 1145, 1149
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	3 cut(s)	111, 341, 679
MnlI	CCTC	9 cut(s)	290, 354, 581, 684, 700, 812, 846, 893, 983
Mox20I	TGGCCA	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	436
MroXI	GAANNNNTTC	1 cut(s)	213
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	5 cut(s)	170, 590, 896, 1148, 1170
Msp20I	TGGCCA	1 cut(s)	140
MspA1I	CMGCKG	1 cut(s)	1049
MspI	CCGG	2 cut(s)	437, 873
MspR9I	CCNGG	3 cut(s)	874, 1088, 1107
MvaI	CCWGG	2 cut(s)	1088, 1107
MwoI	GCNNNNNNNGC	3 cut(s)	314, 1016, 1058
NciI	CCSGG	1 cut(s)	874
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	4 cut(s)	46, 276, 600, 936
NlaIII	CATG	9 cut(s)	264, 426, 479, 513, 577, 632, 637, 928, 1165
NlaIV	GGNNCC	1 cut(s)	795
NmeAIII	GCCGAG	1 cut(s)	691
NmuCI	GTSAC	1 cut(s)	940
NspI	RCATGY	1 cut(s)	426
PagI	TCATGA	2 cut(s)	573, 1161
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	4 cut(s)	300, 482, 521, 1135
PflMI	CCANNNNNTGG	2 cut(s)	634, 1052
PkrI	GCNGC	2 cut(s)	997, 1051
Ple19I	CGATCG	1 cut(s)	939
PleI	GAGTC	3 cut(s)	111, 341, 678
PpsI	GAGTC	3 cut(s)	111, 341, 678
Ppu21I	YACGTR	1 cut(s)	1190
PpuMI	RGGWCCY	1 cut(s)	794
PshBI	ATTAAT	1 cut(s)	1148
Psp5II	RGGWCCY	1 cut(s)	794
Psp6I	CCWGG	2 cut(s)	1086, 1105
PspFI	CCCAGC	3 cut(s)	286, 309, 790
PspGI	CCWGG	2 cut(s)	1086, 1105
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	6 cut(s)	185, 284, 663, 794, 976, 1043
PspPPI	RGGWCCY	1 cut(s)	794
PstI	CTGCAG	1 cut(s)	346
PstNI	CAGNNNCTG	2 cut(s)	350, 1052
PvuI	CGATCG	1 cut(s)	939
PvuII	CAGCTG	1 cut(s)	1049
RsaI	GTAC	3 cut(s)	15, 770, 1188
RsaNI	GTAC	3 cut(s)	14, 769, 1187
SaqAI	TTAA	5 cut(s)	170, 590, 896, 1148, 1170
SatI	GCNGC	2 cut(s)	996, 1050
Sau3AI	GATC	4 cut(s)	46, 276, 600, 936
Sau96I	GGNCC	6 cut(s)	185, 284, 663, 794, 976, 1043
ScaI	AGTACT	1 cut(s)	15
SchI	GAGTC	3 cut(s)	111, 341, 679
ScrFI	CCNGG	3 cut(s)	874, 1088, 1107
SduI	GDGCHC	1 cut(s)	1078
SexAI	ACCWGGT	1 cut(s)	1105
SfaNI	GCATC	4 cut(s)	515, 777, 914, 1081
SfcI	CTRYAG	1 cut(s)	342
SinI	GGWCC	4 cut(s)	185, 794, 976, 1043
Sse9I	AATT	8 cut(s)	127, 580, 729, 759, 804, 1005, 1145, 1149
SspI	AATATT	1 cut(s)	901
StyD4I	CCNGG	3 cut(s)	872, 1086, 1105
TaaI	ACNGT	2 cut(s)	250, 1186
TaiI	ACGT	1 cut(s)	1192
TaqI	TCGA	4 cut(s)	58, 599, 676, 1115
TasI	AATT	8 cut(s)	127, 580, 729, 759, 804, 1005, 1145, 1149
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	4 cut(s)	300, 482, 521, 1135
Tru1I	TTAA	5 cut(s)	170, 590, 896, 1148, 1170
Tru9I	TTAA	5 cut(s)	170, 590, 896, 1148, 1170
TscAI	CASTG	4 cut(s)	96, 127, 949, 1068
TseFI	GTSAC	1 cut(s)	940
TseI	GCWGC	2 cut(s)	995, 1049
Tsp45I	GTSAC	1 cut(s)	940
TspDTI	ATGAA	5 cut(s)	474, 543, 590, 943, 1117
TspGWI	ACGGA	1 cut(s)	877
TspRI	CASTG	4 cut(s)	96, 127, 949, 1068
Van91I	CCANNNNNTGG	2 cut(s)	634, 1052
VpaK11BI	GGWCC	4 cut(s)	185, 794, 976, 1043
VspI	ATTAAT	1 cut(s)	1148
XapI	RAATTY	1 cut(s)	127
XceI	RCATGY	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	213
ZrmI	AGTACT	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.