Rw1G008410

Protein ZINC INDUCED

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
18149829 .. 18160643
10815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G008410.1

Sequence Viewer

Length: 1473 bp
ATGGCGGCAGAGAATGAGGAGCACAGGGAGAGCTTGTTGAAGAAGGTATACTATGAAAACTGCCCGGGTTGTAAGGTGGAAGAGGAGAAGGCGTTGCAACGAGGCCTTCCTGTTCGAAAGCTTGTGGCTATCTGGGGGATCGTGCTCTCTGCTGCGCTGCCAATATCATCTCTATTTCCATTTCTTTATTTTATGATTAGGGATTTTCATATTGCAAAAAGAGATGAAGATATTGGCTTCTATGCTGGGTATGTAGGGTCTTCGTATATGCTTGGAAGAGTACTGACTTCAGTTTTCTGGGGAATAGTGGCTGATCGTTACGGTCGAAAACCTGTCATAATAATAGGGACTTTTCAGGTTGTTTTCAATACTCTCTTTGGACTCAGTGTAAATTTTTGGATGGCCATCATTACAAGATTTCTTCTTGGAAGTTTAAATGGTTTGCTTGGACCAATAAAGGCATATGCAAGTGAAGTCTTTCGGGAAGAACATCAAGCTTTAGGAATGTCAACAGTTAGCACAGCATGGGGTATCGGATTGATCATTGGCCCAGCTTTGGGGGGATTCTTTGCCCAGCCAGCAGAGAAATATCCCACTATATTTTCTGCGGACTCTGTATTTGGGAGGTTTCCATACTTCTTACCTTGCCTTTGTATATCGCTTTTTGCACTTGGAATAACCGTTGCATGTTTCTGGCTTCCGGAAACTTTACACAATCACAATGAAAATGACAGATTACATGATGATTCCTTTGAAGCATTGGAAACTGCATCCTGTGGGTCAGATTCAAATGAAATAAAACAAAAAACTGAAGAACAAAAACCTAAACAAAGCCTCATGAAGAATTGGCCGTTAATGTCATCGATCATTGTTTATTCTTTTTTCTCACTCCATGACATGGCTTATACGGAGATATTCTCATTATGGGCCGAGAGTCCTCGAAAGTTAGGGGGTTTGAGCTATTCAACTGAGGATGTTGGTGAAGTTCTTGCAATTTCAGGTTTTAGTCTTTTTGTCTTTCAAATTACTCTGTACCCGTATGTGGAAAAGATGCTGGGTCCTGTAAGAATTGCTCGCATTGGAGGGGTTTTAACTATACCTCTTTTGTCAAGCTACCCCTTTATAGCATTGTTATCCGGGTTCTCCCTCTCCGTGCTGTTAAATATTGCATCTCTGCTGAAAAATGTCATGTCTATCACGATCGTCACTGGTCTGTTCATTCTCCAAAACAGAGCTGTGGACCAACATCAAAGAGGTGCTGCTAATGGAATTGCTATGACTGCAATGTCTTTGTTCAAGGCAGTTGGTCCAGCTGCTGGTGGTGCAGTGTTTTCTTGGGCACAAAAACGCCTGGATGCTTCCATTCTACCTGGTATCTCGATGGTTTTCTTCATCTTGAATCTGGTGGAATTAATTGCAGTTCTCATGACATTTAAACCATTTCTTACTGTACGTGATGATAGACTGGGATGA

Protein Analysis

490

Amino Acids

54.25

Weight (kDa)

6.72

Isoelectric Point (pI)

38.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 45 - 437 4.4e-34 Major Facilitator Superfamily
Sugar_tr PF00083 69 - 276 3.4e-12 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1285
AccB7I CCANNNNNTGG 2 cut(s) 898, 1316
AccI GTMKAC 1 cut(s) 48
AccIII TCCGGA 1 cut(s) 700
AciI CCGC 2 cut(s) 5, 608
AclWI GGATC 1 cut(s) 146
AcoI YGGCCR 2 cut(s) 402, 848
AcsI RAATTY 1 cut(s) 391
AcuI CTGAAG 2 cut(s) 273, 831
AfaI GTAC 3 cut(s) 282, 1034, 1452
AfiI CCNNNNNNNGG 5 cut(s) 556, 557, 898, 1042, 1316
AgsI TTSAA 8 cut(s) 40, 367, 755, 789, 966, 1022, 1297, 1399
AjnI CCWGG 2 cut(s) 1350, 1369
AluBI AGCT 8 cut(s) 33, 121, 497, 554, 960, 1113, 1235, 1313
AluI AGCT 8 cut(s) 33, 121, 497, 554, 960, 1113, 1235, 1313
Alw21I GWGCWC 2 cut(s) 24, 147
AlwI GGATC 1 cut(s) 146
AlwNI CAGNNNCTG 1 cut(s) 1316
Ama87I CYCGRG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 700
AoxI GGCC 5 cut(s) 103, 402, 547, 848, 927
ApeKI GCWGC 4 cut(s) 152, 157, 1259, 1313
ApoI RAATTY 1 cut(s) 391
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AseI ATTAAT 1 cut(s) 1412
Asp700I GAANNNNTTC 1 cut(s) 477
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 6 cut(s) 449, 548, 927, 1058, 1240, 1307
AsuC2I CCSGG 3 cut(s) 65, 66, 1138
AsuHPI GGTGA 1 cut(s) 992
AsuII TTCGAA 1 cut(s) 115
AvaI CYCGRG 1 cut(s) 64
AvaII GGWCC 4 cut(s) 449, 1058, 1240, 1307
BaeGI GKGCMC 1 cut(s) 1342
BalI TGGCCA 1 cut(s) 404
BarI GAAGNNNNNNTAC 2 cut(s) 32, 64
BbsI GAAGAC 1 cut(s) 252
Bbv12I GWGCWC 2 cut(s) 24, 147
BbvI GCAGC 4 cut(s) 139, 144, 1246, 1300
BccI CCATC 3 cut(s) 394, 413, 1375
BceAI ACGGC 1 cut(s) 835
BciT130I CCWGG 2 cut(s) 1352, 1371
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 3 cut(s) 65, 66, 1138
BisI GCNGC 5 cut(s) 6, 153, 158, 1260, 1314
BlsI GCNGC 5 cut(s) 7, 154, 159, 1261, 1315
BmcAI AGTACT 1 cut(s) 282
Bme1390I CCNGG 5 cut(s) 65, 66, 1138, 1352, 1371
Bme18I GGWCC 4 cut(s) 449, 1058, 1240, 1307
BmeT110I CYCGRG 1 cut(s) 64
BmgT120I GGNCC 6 cut(s) 449, 548, 927, 1058, 1240, 1307
BmiI GGNNCC 1 cut(s) 1059
BmrFI CCNGG 5 cut(s) 65, 66, 1138, 1352, 1371
BmsI GCATC 4 cut(s) 779, 1041, 1178, 1345
BpiI GAAGAC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 902, 934
Bpu14I TTCGAA 1 cut(s) 115
BpuMI CCSGG 3 cut(s) 65, 66, 1138
Bsa29I ATCGAT 1 cut(s) 863
BsaAI YACGTR 1 cut(s) 1454
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 64
BsaWI WCCGGW 1 cut(s) 700
BsaXI ACNNNNNCTCC 4 cut(s) 20, 50, 77, 107
Bsc4I CCNNNNNNNGG 5 cut(s) 556, 557, 898, 1042, 1316
Bse1I ACTGG 2 cut(s) 1213, 1470
Bse3DI GCAATG 1 cut(s) 1290
Bse8I GATNNNNATC 1 cut(s) 404
BseAI TCCGGA 1 cut(s) 700
BseBI CCWGG 2 cut(s) 1352, 1371
BseCI ATCGAT 1 cut(s) 863
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 4 cut(s) 405, 770, 979, 1360
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 5 cut(s) 556, 557, 898, 1042, 1316
BseMI GCAATG 1 cut(s) 1290
BseMII CTCAG 2 cut(s) 397, 960
BseNI ACTGG 2 cut(s) 1213, 1470
BseRI GAGGAG 2 cut(s) 32, 98
BseSI GKGCMC 1 cut(s) 1342
BseXI GCAGC 4 cut(s) 139, 144, 1246, 1300
BseYI CCCAGC 4 cut(s) 245, 550, 573, 1054
BsgI GTGCAG 1 cut(s) 1344
Bsh1285I CGRYCG 2 cut(s) 325, 1203
BshFI GGCC 5 cut(s) 105, 404, 549, 850, 929
BshVI ATCGAT 1 cut(s) 863
BsiEI CGRYCG 2 cut(s) 325, 1203
BsiHKAI GWGCWC 2 cut(s) 24, 147
BsiHKCI CYCGRG 1 cut(s) 64
BsiSI CCGG 3 cut(s) 65, 701, 1137
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 5 cut(s) 556, 557, 898, 1042, 1316
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 5 cut(s) 105, 404, 549, 850, 929
BsoBI CYCGRG 1 cut(s) 64
Bsp119I TTCGAA 1 cut(s) 115
Bsp1286I GDGCHC 3 cut(s) 24, 147, 1342
Bsp13I TCCGGA 1 cut(s) 700
Bsp143I GATC 5 cut(s) 138, 313, 540, 864, 1200
BspACI CCGC 2 cut(s) 5, 608
BspANI GGCC 5 cut(s) 105, 404, 549, 850, 929
BspCNI CTCAG 2 cut(s) 396, 961
BspDI ATCGAT 1 cut(s) 863
BspEI TCCGGA 1 cut(s) 700
BspHI TCATGA 2 cut(s) 837, 1425
BspLI GGNNCC 1 cut(s) 1059
BspPI GGATC 1 cut(s) 146
BspT104I TTCGAA 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 1290
BsrI ACTGG 2 cut(s) 1213, 1470
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 5 cut(s) 138, 313, 540, 864, 1200
BssNAI GTATAC 1 cut(s) 49
Bst1107I GTATAC 1 cut(s) 49
Bst2UI CCWGG 2 cut(s) 1352, 1371
Bst4CI ACNGT 4 cut(s) 323, 514, 682, 1450
Bst6I CTCTTC 2 cut(s) 75, 271
BstBAI YACGTR 1 cut(s) 1454
BstBI TTCGAA 1 cut(s) 115
BstC8I GCNNGC 2 cut(s) 579, 1075
BstDEI CTNAG 2 cut(s) 383, 969
BstF5I GGATG 4 cut(s) 405, 770, 979, 1360
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 5 cut(s) 141, 316, 543, 867, 1203
BstMBI GATC 5 cut(s) 138, 313, 540, 864, 1200
BstMCI CGRYCG 2 cut(s) 325, 1203
BstMWI GCNNNNNNNGC 3 cut(s) 578, 1280, 1322
BstNI CCWGG 2 cut(s) 1352, 1371
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 5 cut(s) 63, 64, 1136, 1350, 1369
BstSLI GKGCMC 1 cut(s) 1342
BstV1I GCAGC 4 cut(s) 139, 144, 1246, 1300
BstV2I GAAGAC 1 cut(s) 252
BstZ17I GTATAC 1 cut(s) 49
Bsu15I ATCGAT 1 cut(s) 863
BsuRI GGCC 5 cut(s) 105, 404, 549, 850, 929
BsuTUI ATCGAT 1 cut(s) 863
BtsCI GGATG 4 cut(s) 405, 770, 979, 1360
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 3 cut(s) 391, 1206, 1332
Cac8I GCNNGC 2 cut(s) 579, 1075
CaiI CAGNNNCTG 1 cut(s) 1316
CciI TCATGA 2 cut(s) 837, 1425
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 6 cut(s) 449, 548, 927, 1058, 1240, 1307
Cfr9I CCCGGG 1 cut(s) 64
ClaI ATCGAT 1 cut(s) 863
CsiI ACCWGGT 1 cut(s) 1369
Csp6I GTAC 3 cut(s) 281, 1033, 1451
CviAII CATG 8 cut(s) 525, 687, 740, 838, 893, 898, 1189, 1426
CviQI GTAC 3 cut(s) 281, 1033, 1451
DdeI CTNAG 2 cut(s) 383, 969
DpnI GATC 5 cut(s) 140, 315, 542, 866, 1202
DpnII GATC 5 cut(s) 138, 313, 540, 864, 1200
DraI TTTAAA 2 cut(s) 435, 1435
DrdI GACNNNNNNGTC 1 cut(s) 1285
DseDI GACNNNNNNGTC 1 cut(s) 1285
EaeI YGGCCR 2 cut(s) 402, 848
Eam1104I CTCTTC 2 cut(s) 75, 271
EarI CTCTTC 2 cut(s) 75, 271
Eco147I AGGCCT 1 cut(s) 105
Eco47I GGWCC 4 cut(s) 449, 1058, 1240, 1307
Eco57I CTGAAG 2 cut(s) 273, 831
Eco88I CYCGRG 1 cut(s) 64
EcoO109I RGGNCCY 1 cut(s) 1058
EcoRII CCWGG 2 cut(s) 1350, 1369
FaeI CATG 8 cut(s) 528, 690, 743, 841, 896, 901, 1192, 1429
FaqI GGGAC 1 cut(s) 361
FatI CATG 8 cut(s) 524, 686, 739, 837, 892, 897, 1188, 1425
FauNDI CATATG 1 cut(s) 463
FbaI TGATCA 1 cut(s) 540
FblI GTMKAC 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 6, 153, 158, 1260, 1314
FokI GGATG 4 cut(s) 412, 757, 986, 1367
Fsp4HI GCNGC 5 cut(s) 6, 153, 158, 1260, 1314
GlaI GCGC 1 cut(s) 156
GluI GCNGC 5 cut(s) 6, 153, 158, 1260, 1314
GsaI CCCAGC 4 cut(s) 249, 554, 577, 1058
HaeIII GGCC 5 cut(s) 105, 404, 549, 850, 929
HapII CCGG 3 cut(s) 65, 701, 1137
HhaI GCGC 1 cut(s) 157
Hin1II CATG 8 cut(s) 528, 690, 743, 841, 896, 901, 1192, 1429
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 2 cut(s) 119, 495
HinfI GANTC 7 cut(s) 381, 564, 611, 746, 785, 934, 1399
HpaII CCGG 3 cut(s) 65, 701, 1137
HphI GGTGA 1 cut(s) 992
Hpy166II GTNNAC 3 cut(s) 49, 510, 1240
Hpy188I TCNGA 2 cut(s) 536, 784
Hpy188III TCNNGA 7 cut(s) 482, 701, 838, 1198, 1378, 1396, 1426
Hpy8I GTNNAC 3 cut(s) 49, 510, 1240
HpyAV CCTTC 3 cut(s) 37, 82, 116
HpyCH4III ACNGT 4 cut(s) 323, 514, 682, 1450
HpyCH4IV ACGT 1 cut(s) 1453
HpyF10VI GCNNNNNNNGC 3 cut(s) 578, 1280, 1322
HpyF3I CTNAG 2 cut(s) 383, 969
HpySE526I ACGT 1 cut(s) 1453
Hsp92II CATG 8 cut(s) 528, 690, 743, 841, 896, 901, 1192, 1429
HspAI GCGC 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 700
Ksp22I TGATCA 1 cut(s) 540
Kzo9I GATC 5 cut(s) 138, 313, 540, 864, 1200
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 4 cut(s) 139, 144, 1246, 1300
LweI GCATC 4 cut(s) 779, 1041, 1178, 1345
MabI ACCWGGT 1 cut(s) 1369
MaeII ACGT 1 cut(s) 1453
MaeIII GTNAC 2 cut(s) 317, 1204
MalI GATC 5 cut(s) 140, 315, 542, 866, 1202
MboI GATC 5 cut(s) 138, 313, 540, 864, 1200
MhlI GDGCHC 3 cut(s) 24, 147, 1342
MlsI TGGCCA 1 cut(s) 404
MluCI AATT 8 cut(s) 391, 844, 993, 1023, 1068, 1269, 1409, 1413
MluNI TGGCCA 1 cut(s) 404
MlyI GAGTC 3 cut(s) 375, 605, 943
Mox20I TGGCCA 1 cut(s) 404
MroI TCCGGA 1 cut(s) 700
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 404
MseI TTAA 6 cut(s) 434, 854, 1091, 1160, 1412, 1434
Msp20I TGGCCA 1 cut(s) 404
MspA1I CMGCKG 1 cut(s) 1313
MspI CCGG 3 cut(s) 65, 701, 1137
MspR9I CCNGG 5 cut(s) 65, 66, 1138, 1352, 1371
MvaI CCWGG 2 cut(s) 1352, 1371
MwoI GCNNNNNNNGC 3 cut(s) 578, 1280, 1322
NciI CCSGG 3 cut(s) 65, 66, 1138
NdeI CATATG 1 cut(s) 463
NdeII GATC 5 cut(s) 138, 313, 540, 864, 1200
NlaIII CATG 8 cut(s) 528, 690, 743, 841, 896, 901, 1192, 1429
NlaIV GGNNCC 1 cut(s) 1059
NmeAIII GCCGAG 1 cut(s) 955
NmuCI GTSAC 1 cut(s) 1204
NspI RCATGY 1 cut(s) 690
NspV TTCGAA 1 cut(s) 115
PagI TCATGA 2 cut(s) 837, 1425
PceI AGGCCT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 564, 746, 785, 1399
PflMI CCANNNNNTGG 2 cut(s) 898, 1316
PkrI GCNGC 5 cut(s) 7, 154, 159, 1261, 1315
Ple19I CGATCG 1 cut(s) 1203
PleI GAGTC 3 cut(s) 375, 605, 942
PpsI GAGTC 3 cut(s) 375, 605, 942
Ppu21I YACGTR 1 cut(s) 1454
PpuMI RGGWCCY 1 cut(s) 1058
PshBI ATTAAT 1 cut(s) 1412
Psp5II RGGWCCY 1 cut(s) 1058
Psp6I CCWGG 2 cut(s) 1350, 1369
PspFI CCCAGC 4 cut(s) 245, 550, 573, 1054
PspGI CCWGG 2 cut(s) 1350, 1369
PspN4I GGNNCC 1 cut(s) 1059
PspPI GGNCC 6 cut(s) 449, 548, 927, 1058, 1240, 1307
PspPPI RGGWCCY 1 cut(s) 1058
PstNI CAGNNNCTG 1 cut(s) 1316
PvuI CGATCG 1 cut(s) 1203
PvuII CAGCTG 1 cut(s) 1313
RsaI GTAC 3 cut(s) 282, 1034, 1452
RsaNI GTAC 3 cut(s) 281, 1033, 1451
SaqAI TTAA 6 cut(s) 434, 854, 1091, 1160, 1412, 1434
SatI GCNGC 5 cut(s) 6, 153, 158, 1260, 1314
Sau3AI GATC 5 cut(s) 138, 313, 540, 864, 1200
Sau96I GGNCC 6 cut(s) 449, 548, 927, 1058, 1240, 1307
ScaI AGTACT 1 cut(s) 282
SchI GAGTC 3 cut(s) 375, 605, 943
ScrFI CCNGG 5 cut(s) 65, 66, 1138, 1352, 1371
SduI GDGCHC 3 cut(s) 24, 147, 1342
SexAI ACCWGGT 1 cut(s) 1369
SfaNI GCATC 4 cut(s) 779, 1041, 1178, 1345
SfuI TTCGAA 1 cut(s) 115
SinI GGWCC 4 cut(s) 449, 1058, 1240, 1307
SmaI CCCGGG 1 cut(s) 66
Sse9I AATT 8 cut(s) 391, 844, 993, 1023, 1068, 1269, 1409, 1413
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 2 cut(s) 5, 608
SspI AATATT 1 cut(s) 1165
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 5 cut(s) 63, 64, 1136, 1350, 1369
TaaI ACNGT 4 cut(s) 323, 514, 682, 1450
TaiI ACGT 1 cut(s) 1456
TaqI TCGA 5 cut(s) 115, 325, 863, 940, 1379
TasI AATT 8 cut(s) 391, 844, 993, 1023, 1068, 1269, 1409, 1413
TatI WGTACW 1 cut(s) 280
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 4 cut(s) 564, 746, 785, 1399
Tru1I TTAA 6 cut(s) 434, 854, 1091, 1160, 1412, 1434
Tru9I TTAA 6 cut(s) 434, 854, 1091, 1160, 1412, 1434
TscAI CASTG 3 cut(s) 391, 1213, 1332
TseFI GTSAC 1 cut(s) 1204
TseI GCWGC 4 cut(s) 152, 157, 1259, 1313
Tsp45I GTSAC 1 cut(s) 1204
TspDTI ATGAA 8 cut(s) 69, 197, 240, 738, 807, 854, 1207, 1381
TspGWI ACGGA 2 cut(s) 923, 1141
TspMI CCCGGG 1 cut(s) 64
TspRI CASTG 3 cut(s) 391, 1213, 1332
Van91I CCANNNNNTGG 2 cut(s) 898, 1316
VpaK11BI GGWCC 4 cut(s) 449, 1058, 1240, 1307
VspI ATTAAT 1 cut(s) 1412
XapI RAATTY 1 cut(s) 391
XceI RCATGY 1 cut(s) 690
XmaI CCCGGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.