Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Forward (+)

21025607 .. 21029542

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTGAGGAGTGCAGAGAGACGCTGCTGAAGAAGGTTTACTATGACGAGTGTCCCGGCTGTGTAGTGGAACAGCGTAAAGAGCTGCAGAGAGGTCTTCCTATTAAAATGCTTGTTTCTATATGGCTTATTGCTCTTTCATCTGCGCTGCCAGTATCATCTCTCTTTCCATTCCTTTATTTTATGATCAGGGATTTGCATATTGCTAAAAGAGAGGAAGACATTGGATACTATGCTGGATATGTAGGGGCTTCATTTATGCTTGGCAGAGTTCTGACATCAATTTTGTGGGGAATGGTGGCTGATCGCTATGGCCGGAAGCCTGTCATAATTATAGGGATTGTTGCAGTGGTTATTTTCAACACTCTATTTGGACTCAGTGTAAACTATTGGATGGCTATTTCTACACGGTTTCTTCTTGGAAGTTTGAATGGTTCACTTGGGCCGATTAAGGCATACTCATGTGAAGCCTTCCGAGAAGAACACCAAGCTTTAAGCATGTCAACAGTTAGCGTAGCCCGAGGTATCGGATTGATCATTGGCCCAGCTTTGGGAGGTTTCTTGGCCCAGCCAGCAGACAAATATCCAAGTATATTTTCCCAAAACTCTATATTTGGGAGGTTTCCGTATTTCTTGCCTTGCCTATGTATATCGGCTTTAGCGTTTGGAGTAACCATTATTTCTTTCTGGCTTCCGGAAGCTTTACACAAGCACAACGGAAAAGCTAGATTACACGATGATTCTTATGAAGCTTTGGAAACTGCATCTGGTGGGTCTGATCCAATGATGAAAAGCAAAAAACTGAAGAACAAACACCTAAAGAAAACCTTTTCAAGAATTGGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

283

Amino Acids

31.32

Weight (kDa)

9.23

Isoelectric Point (pI)

39.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	694
AclWI	GGATC	1 cut(s)	773
AcoI	YGGCCR	1 cut(s)	313
AcuI	CTGAAG	2 cut(s)	50, 824
AfiI	CCNNNNNNNGG	2 cut(s)	550, 551
AgsI	TTSAA	3 cut(s)	361, 430, 834
AjuI	GAANNNNNNNTTGG	2 cut(s)	580, 612
AluBI	AGCT	6 cut(s)	85, 491, 548, 701, 725, 752
AluI	AGCT	6 cut(s)	85, 491, 548, 701, 725, 752
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	773
Ama87I	CYCGRG	1 cut(s)	519
Aor13HI	TCCGGA	1 cut(s)	694
AoxI	GGCC	5 cut(s)	313, 443, 541, 564, 841
ApeKI	GCWGC	3 cut(s)	25, 85, 148
ArsI	GACNNNNNNTTYG	2 cut(s)	268, 300
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	4 cut(s)	443, 542, 565, 842
AsuC2I	CCSGG	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	519
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbsI	GAAGAC	2 cut(s)	89, 225
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	3 cut(s)	12, 72, 135
BccI	CCATC	1 cut(s)	388
BciVI	GTATCC	1 cut(s)	221
BclI	TGATCA	2 cut(s)	186, 534
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	726
BfmI	CTRYAG	1 cut(s)	86
BfuI	GTATCC	1 cut(s)	221
BisI	GCNGC	3 cut(s)	26, 86, 149
BlsI	GCNGC	3 cut(s)	27, 87, 150
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	519
BmgT120I	GGNCC	4 cut(s)	443, 542, 565, 842
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	773
BoxI	GACNNNNGTC	1 cut(s)	51
BpiI	GAAGAC	2 cut(s)	89, 225
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	1 cut(s)	520
BsaWI	WCCGGW	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 551
Bse1I	ACTGG	1 cut(s)	152
BseAI	TCCGGA	1 cut(s)	694
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	1 cut(s)	399
BseLI	CCNNNNNNNGG	2 cut(s)	550, 551
BseMII	CTCAG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	23
BseXI	GCAGC	3 cut(s)	12, 72, 135
BseYI	CCCAGC	2 cut(s)	544, 567
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	315, 445, 543, 566, 843
BsiHKCI	CYCGRG	1 cut(s)	519
BsiSI	CCGG	3 cut(s)	57, 316, 695
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	550, 551
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	5 cut(s)	315, 445, 543, 566, 843
BsoBI	CYCGRG	1 cut(s)	519
Bsp13I	TCCGGA	1 cut(s)	694
Bsp143I	GATC	4 cut(s)	186, 304, 534, 778
BspANI	GGCC	5 cut(s)	315, 445, 543, 566, 843
BspCNI	CTCAG	1 cut(s)	390
BspEI	TCCGGA	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	90
BspPI	GGATC	1 cut(s)	773
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	4 cut(s)	186, 304, 534, 778
Bst4CI	ACNGT	2 cut(s)	411, 508
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	6, 377
BstF5I	GGATG	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	4 cut(s)	189, 307, 537, 781
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	4 cut(s)	186, 304, 534, 778
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 572
BstNSI	RCATGY	1 cut(s)	502
BstPAI	GACNNNNGTC	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	1 cut(s)	86
BstV1I	GCAGC	3 cut(s)	12, 72, 135
BstV2I	GAAGAC	2 cut(s)	89, 225
BsuI	GTATCC	1 cut(s)	221
BsuRI	GGCC	5 cut(s)	315, 445, 543, 566, 843
BtsCI	GGATG	1 cut(s)	399
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 385
Cac8I	GCNNGC	1 cut(s)	573
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	443, 542, 565, 842
CseI	GACGC	1 cut(s)	31
CviAII	CATG	2 cut(s)	462, 499
DdeI	CTNAG	2 cut(s)	6, 377
DpnI	GATC	4 cut(s)	188, 306, 536, 780
DpnII	GATC	4 cut(s)	186, 304, 534, 778
EaeI	YGGCCR	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	50, 824
Eco88I	CYCGRG	1 cut(s)	519
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	2 cut(s)	465, 502
FalI	AAGNNNNNCTT	2 cut(s)	812, 844
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	2 cut(s)	461, 498
FbaI	TGATCA	2 cut(s)	186, 534
Fnu4HI	GCNGC	3 cut(s)	26, 86, 149
FokI	GGATG	1 cut(s)	406
Fsp4HI	GCNGC	3 cut(s)	26, 86, 149
FspBI	CTAG	1 cut(s)	726
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	3 cut(s)	26, 86, 149
GsaI	CCCAGC	2 cut(s)	548, 571
HaeIII	GGCC	5 cut(s)	315, 445, 543, 566, 843
HapII	CCGG	3 cut(s)	57, 316, 695
HgaI	GACGC	1 cut(s)	31
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	465, 502
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HincII	GTYRAC	1 cut(s)	504
HindII	GTYRAC	1 cut(s)	504
HindIII	AAGCTT	3 cut(s)	489, 699, 750
HinfI	GANTC	2 cut(s)	375, 740
HpaII	CCGG	3 cut(s)	57, 316, 695
Hpy166II	GTNNAC	4 cut(s)	40, 385, 437, 504
Hpy188I	TCNGA	4 cut(s)	276, 476, 530, 778
Hpy188III	TCNNGA	2 cut(s)	695, 834
Hpy8I	GTNNAC	4 cut(s)	40, 385, 437, 504
HpyAV	CCTTC	2 cut(s)	28, 481
HpyCH4III	ACNGT	2 cut(s)	411, 508
HpyCH4V	TGCA	5 cut(s)	15, 88, 199, 347, 764
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 572
HpyF3I	CTNAG	2 cut(s)	6, 377
Hsp92II	CATG	2 cut(s)	465, 502
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	1 cut(s)	694
Ksp22I	TGATCA	2 cut(s)	186, 534
Kzo9I	GATC	4 cut(s)	186, 304, 534, 778
Lsp1109I	GCAGC	3 cut(s)	12, 72, 135
LweI	GCATC	1 cut(s)	773
MaeI	CTAG	1 cut(s)	726
MaeIII	GTNAC	1 cut(s)	670
MalI	GATC	4 cut(s)	188, 306, 536, 780
MboI	GATC	4 cut(s)	186, 304, 534, 778
MboII	GAAGA	6 cut(s)	43, 89, 230, 407, 491, 817
MluCI	AATT	3 cut(s)	282, 330, 837
MlyI	GAGTC	1 cut(s)	369
MnlI	CCTC	5 cut(s)	86, 208, 515, 548, 612
MroI	TCCGGA	1 cut(s)	694
MseI	TTAA	4 cut(s)	105, 450, 494, 847
MslI	CAYNNNNRTG	1 cut(s)	460
MspI	CCGG	3 cut(s)	57, 316, 695
MspR9I	CCNGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	82, 572
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	4 cut(s)	186, 304, 534, 778
NlaIII	CATG	2 cut(s)	465, 502
NspI	RCATGY	1 cut(s)	502
PcsI	WCGNNNNNNNCGW	1 cut(s)	659
PfeI	GAWTC	1 cut(s)	740
PkrI	GCNGC	3 cut(s)	27, 87, 150
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PshAI	GACNNNNGTC	1 cut(s)	51
PspFI	CCCAGC	2 cut(s)	544, 567
PspPI	GGNCC	4 cut(s)	443, 542, 565, 842
PstI	CTGCAG	1 cut(s)	90
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	105, 450, 494, 847
SatI	GCNGC	3 cut(s)	26, 86, 149
Sau3AI	GATC	4 cut(s)	186, 304, 534, 778
Sau96I	GGNCC	4 cut(s)	443, 542, 565, 842
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	773
SfcI	CTRYAG	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	282, 330, 837
SspMI	CTAG	1 cut(s)	726
StyD4I	CCNGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	411, 508
TasI	AATT	3 cut(s)	282, 330, 837
TfiI	GAWTC	1 cut(s)	740
Tru1I	TTAA	4 cut(s)	105, 450, 494, 847
Tru9I	TTAA	4 cut(s)	105, 450, 494, 847
TscAI	CASTG	2 cut(s)	354, 385
TseI	GCWGC	3 cut(s)	25, 85, 148
TspDTI	ATGAA	4 cut(s)	129, 243, 762, 803
TspGWI	ACGGA	2 cut(s)	615, 732
TspRI	CASTG	2 cut(s)	354, 385
XceI	RCATGY	1 cut(s)	502
XspI	CTAG	1 cut(s)	726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.