Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001907

Physical Location & Seq

Genomic Coordinates Reverse (-)

14365703 .. 14367111

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0088400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGAAGAACGAAGAACAAGCTCGGTTTCTGTTTGGGATTTCGCTCTCTGATAGACCCAAATGGCAGCAATTCCTGCTTTGCTCTTCTGGGTTCTTCTTTGGTTATCTGGTTAATGGTGTCTGTGAGGAATATGTGTATAACAGGCTACAATTCAGTTATGGGTGGTACTTCACATTTGTACAAGGATTTGTGTATCTATTTCTGATTTATCTTCAAGGCTTTACCACCAAGCAAATGGTGAACCCATGGAAGACTTATGTGAAGCTATCTGCTGTGCTTATGGGCTCTCATGGACTTACCAAAGGCTGCTTGGCTTTTCTCAACTACCCTGCACAGCTAATGTTCAAATCAACAAAGGTTTTGCCTATGATGATAATGGGATCCTTCATACCAGGTTTGAGGCGGAAGTACCCACCTCATGAGTACGTTTCTGCAATCCTTCTGGTGGTGGGTCTGATCCTATTCACCTTAGCGGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009605 GO:0009606 GO:0009607 GO:0009624 GO:0009628 GO:0009629 GO:0009630 GO:0009705 GO:0009914 GO:0009926 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0010119 GO:0010540 GO:0010817 GO:0015075 GO:0015077 GO:0015079 GO:0015291 GO:0015297 GO:0015318 GO:0015672 GO:0016020 GO:0022622 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055065 GO:0055069 GO:0055076 GO:0055080 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0072507 GO:0080167 GO:0090333 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1

Protein Analysis

160

Amino Acids

18.49

Weight (kDa)

9.38

Isoelectric Point (pI)

28.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	23 - 159	2.5e-36	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001907)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT3G43790 AT5G13740 AT5G13740 AT5G13750 AT5G13750 AT5G13750 AT5G13750
fragaria_vesca	FvH4_1g24560 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820 FvH4_7g04820
malus_domestica	MD02G1266900.v1.1 MD02G1267000.v1.1 MD07G1052100.v1.1
prunus_persica	Prupe.2G056300_v2.0.a1 Prupe.2G056300_v2.0.a1
pyrus_communis	pycom02g22850 pycom02g22860 pycom02g22870 pycom07g04040
rosa_chinensis	RchiOBHm_Chr1g0330291
rosa_laevigata	RLG00000029813
rosa_multiflora	Rmu_sc0000244.1_g000004
rosa_roxburghii	Rroxscaffold_1G00031030 Rroxscaffold_3G00228240 Rroxscaffold_4G00308690 Rroxscaffold_4G00319980
rosa_rugosa	Rorug01G0088000 Rorug01G0088100 Rorug01G0088200 Rorug01G0088300 Rorug01G0088400
rosa_samantha	Rh1AG106300 Rh1BG084800 Rh1CG102300 Rh1DG110200 Rh5AG131700
rosa_wichuraiana	Rw1G008410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	403, 473
AclWI	GGATC	3 cut(s)	375, 388, 451
AfaI	GTAC	4 cut(s)	167, 180, 410, 425
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	215, 346
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	3 cut(s)	20, 265, 337
AluI	AGCT	3 cut(s)	20, 265, 337
AlwI	GGATC	3 cut(s)	375, 388, 451
ApeKI	GCWGC	2 cut(s)	64, 306
AsuHPI	GGTGA	2 cut(s)	250, 457
BamHI	GGATCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	257
BbvI	GCAGC	2 cut(s)	76, 293
BciT130I	CCWGG	1 cut(s)	393
BisI	GCNGC	2 cut(s)	65, 307
BlsI	GCNGC	2 cut(s)	66, 308
Bme1390I	CCNGG	1 cut(s)	393
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	393
BmsI	GCATC	1 cut(s)	466
BpiI	GAAGAC	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	469
BsaJI	CCNNGG	1 cut(s)	245
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	481
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseXI	GCAGC	2 cut(s)	76, 293
BsgI	GTGCAG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	445
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	380, 456
Bsp19I	CCATGG	1 cut(s)	245
BspACI	CCGC	2 cut(s)	403, 473
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	3 cut(s)	375, 388, 451
BspQI	GCTCTTC	1 cut(s)	88
BsrGI	TGTACA	1 cut(s)	178
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	2 cut(s)	380, 456
BssT1I	CCWWGG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	393
Bst6I	CTCTTC	1 cut(s)	88
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	469
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	481
BstKTI	GATC	2 cut(s)	383, 459
BstMBI	GATC	2 cut(s)	380, 456
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	393
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	76, 293
BstV2I	GAAGAC	1 cut(s)	257
BstX2I	RGATCY	1 cut(s)	380
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	481
CciI	TCATGA	1 cut(s)	418
CsiI	ACCWGGT	1 cut(s)	391
Csp6I	GTAC	4 cut(s)	166, 179, 409, 424
CviAII	CATG	3 cut(s)	246, 290, 419
CviJI	RGCY	8 cut(s)	20, 145, 219, 265, 285, 306, 314, 337
CviKI_1	RGCY	8 cut(s)	20, 145, 219, 265, 285, 306, 314, 337
CviQI	GTAC	4 cut(s)	166, 179, 409, 424
DdeI	CTNAG	1 cut(s)	469
DpnI	GATC	2 cut(s)	382, 458
DpnII	GATC	2 cut(s)	380, 456
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	418
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	481
EcoT38I	GRGCYC	1 cut(s)	287
ErhI	CCWWGG	1 cut(s)	245
FaeI	CATG	3 cut(s)	249, 293, 422
FatI	CATG	3 cut(s)	245, 289, 418
Fnu4HI	GCNGC	2 cut(s)	65, 307
FriOI	GRGCYC	1 cut(s)	287
Fsp4HI	GCNGC	2 cut(s)	65, 307
GluI	GCNGC	2 cut(s)	65, 307
Hin1II	CATG	3 cut(s)	249, 293, 422
HphI	GGTGA	2 cut(s)	250, 457
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	49, 204, 456
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	394, 449
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	3 cut(s)	332, 434, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	469
HpySE526I	ACGT	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	249, 293, 422
Kzo9I	GATC	2 cut(s)	380, 456
LguI	GCTCTTC	1 cut(s)	88
LpnPI	CCDG	8 cut(s)	72, 86, 92, 127, 342, 378, 405, 428
Lsp1109I	GCAGC	2 cut(s)	76, 293
LweI	GCATC	1 cut(s)	466
MabI	ACCWGGT	1 cut(s)	391
MaeII	ACGT	1 cut(s)	426
MalI	GATC	2 cut(s)	382, 458
MboI	GATC	2 cut(s)	380, 456
MboII	GAAGA	6 cut(s)	16, 23, 75, 85, 203, 262
MflI	RGATCY	1 cut(s)	380
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	68, 149
MnlI	CCTC	3 cut(s)	118, 393, 426
Mph1103I	ATGCAT	1 cut(s)	481
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	1 cut(s)	73
NcoI	CCATGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	380, 456
NlaIII	CATG	3 cut(s)	249, 293, 422
NlaIV	GGNNCC	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	481
PagI	TCATGA	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	88
PkrI	GCNGC	2 cut(s)	66, 308
Psp6I	CCWGG	1 cut(s)	391
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	4 cut(s)	167, 180, 410, 425
RsaNI	GTAC	4 cut(s)	166, 179, 409, 424
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	2 cut(s)	65, 307
Sau3AI	GATC	2 cut(s)	380, 456
ScrFI	CCNGG	1 cut(s)	393
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	8 cut(s)	22, 267, 339, 360, 397, 418, 429, 470
SexAI	ACCWGGT	1 cut(s)	391
SfaNI	GCATC	1 cut(s)	466
Sse9I	AATT	2 cut(s)	68, 149
SsiI	CCGC	2 cut(s)	403, 473
StyD4I	CCNGG	1 cut(s)	391
StyI	CCWWGG	1 cut(s)	245
TaiI	ACGT	1 cut(s)	429
TasI	AATT	2 cut(s)	68, 149
TatI	WGTACW	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	2 cut(s)	64, 306
TspDTI	ATGAA	2 cut(s)	17, 376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	232, 307
Zsp2I	ATGCAT	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.