AT5G13740

zinc induced facilitator

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
4432297 .. 4437148
4852 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13740.2

Sequence Viewer

Length: 1461 bp
ATGGCGGAGGAGTACAAGGAAGCGTTGTTGGAGAAGCAGAACTATCACGACGGATGTCCCGGCTGTAAGGTGGAGCAGATGAAGCAGCTCCGGCGAGGATATCCTTACCTCGAGCTTTCCTTCGTTTGGATTATCGTCCTCTCCACTTCTCTACCAATTTCCTCACTCTATCCCTTCCTCTACTATATGATTGAGGATTTTGGTGTCGCAAAGACGGAGAAAGATATTGGGTTTTATGCTGGTTTTGTTGGTTGCTCTTTTATGCTTGGAAGAGCACTGACTTCTGTGTTCTGGGGAATTGTGGCTGATCGTTATGGAAGAAAACCCATTATACTCTTGGGAACTATCTCAATTGCAATTTTCAACGCTCTTTTTGGCTTGAGCTCAAATTTTTGGATGGCAATTGGCACAAGGTTTCTTCTTGGGAGTTTCAACTGTTTGCTTGGAACAATGAAGGCCTATGCATCAGAAATATTTCGTGATGAATATCAAGCTACCGCAATGTCAGCTGTTAGTACTGCTTGGGGCATTGGACTGATCATTGGCCCTGCTCTTGGTGGTTTTTTAGCTCAGCCGGCAGACAAATATCCAAATGTGTTCTCCCAAGAATCTCTTTTTGGCAGATTCCGGTATGCATTGCCTTGCTTTACGATTTCAGCTTTTGCCTTGCTTGTGACAGTACTATGCTGCTTCATCCCGGAGACACTGCACAATCATAAGCTGGACAGCTTATCACATGATGATTCATACGATATACTTGAAGCTGCATCTCATGAATCATCTCCTTCTACCGGGAAGGCAGGAAAAAACGAAAGAAAGGCTTCTCAGTCTCTCTTGAAGAATTGGCCGCTGATGTCATCTATCATTGTGTATTGTGTTCTGTGTCTTCATGATACTGCATACTCGGAGATATTTGCACTATGGGCTAACAGTCCAAGGAAGTATGGAGGTCTGAGCTACTCAACGAATGAAGTCGGTACAGTTCTTGCTATCTCAGGTCTCGGCCTATTCTCTTTTCAGGTATTTGTTTATCCTTTGGCTGAGAAACTGCTAGGACCTGTTCTGGTCACCCGATATGCTGGGGCACTGATGATACCTATACAAATGAGTTATCCATTTATAGCAGGCTTGTCAGGTCTCAGTCTAAGCTTGATGTTAAATTGTGCATCAATCCTCATAAATGTCTTAAGTGTGTCTGCCATAACCGGCCTGTTGATCCTTCAAAATAGAGCAGTGGATCAGAGCCAAAGAGGGGCGGCTAATGGAATAGCTATGACTGCGATGTCTCTATTTAAGACAGTTGGACCAGCTGGTGCTGGCATCTTATTTTCTTGGAGTGAGAGGCGACTAAACGCTGCATTTCTACCAGGATCGCATATGGTATTCTTCGTCTTGAATGTGATAGTAGTGGTCGGAGTAGCTCTGACATTCAAGCCATTTCTAACGACGAGTCGAAGATGA

Protein Analysis

486

Amino Acids

53.18

Weight (kDa)

8.56

Isoelectric Point (pI)

38.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 42 - 436 2.2e-39 Major Facilitator Superfamily
Sugar_tr PF00083 66 - 235 2.7e-14 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1282
AciI CCGC 4 cut(s) 5, 498, 848, 1256
AclWI GGATC 3 cut(s) 1210, 1245, 1378
AcoI YGGCCR 1 cut(s) 845
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 4 cut(s) 14, 517, 681, 979
AfiI CCNNNNNNNGG 4 cut(s) 126, 554, 791, 1252
AflII CTTAAG 1 cut(s) 1186
AgsI TTSAA 7 cut(s) 364, 433, 761, 838, 1223, 1396, 1432
AjnI CCWGG 1 cut(s) 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 600, 632
Alw21I GWGCWC 2 cut(s) 277, 386
Alw26I GTCTC 5 cut(s) 695, 834, 1004, 1142, 1290
AlwI GGATC 3 cut(s) 1210, 1245, 1378
Ama87I CYCGRG 1 cut(s) 110
AoxI GGCC 5 cut(s) 456, 544, 845, 1003, 1207
ApeKI GCWGC 4 cut(s) 85, 687, 764, 1355
ApoI RAATTY 1 cut(s) 388
Asp700I GAANNNNTTC 2 cut(s) 474, 820
AspS9I GGNCC 3 cut(s) 545, 1055, 1304
AsuC2I CCSGG 3 cut(s) 60, 698, 793
AsuHPI GGTGA 1 cut(s) 1060
AvaI CYCGRG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 1055, 1304
BaeGI GKGCMC 1 cut(s) 1087
BanII GRGCYC 1 cut(s) 386
BbsI GAAGAC 1 cut(s) 878
Bbv12I GWGCWC 2 cut(s) 277, 386
BbvI GCAGC 4 cut(s) 97, 674, 751, 1342
BccI CCATC 1 cut(s) 391
BciT130I CCWGG 1 cut(s) 1368
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 3 cut(s) 60, 698, 793
BcoDI GTCTC 5 cut(s) 695, 834, 1004, 1142, 1290
BfaI CTAG 1 cut(s) 1052
BfrI CTTAAG 1 cut(s) 1186
BisI GCNGC 6 cut(s) 86, 688, 765, 848, 1257, 1356
BlpI GCTNAGC 1 cut(s) 570
BlsI GCNGC 6 cut(s) 87, 689, 766, 849, 1258, 1357
BmcAI AGTACT 2 cut(s) 517, 681
Bme1390I CCNGG 4 cut(s) 60, 698, 793, 1368
Bme18I GGWCC 2 cut(s) 1055, 1304
BmeT110I CYCGRG 1 cut(s) 110
BmgT120I GGNCC 3 cut(s) 545, 1055, 1304
BmrFI CCNGG 4 cut(s) 60, 698, 793, 1368
BmsI GCATC 4 cut(s) 473, 776, 1175, 1329
BoxI GACNNNNGTC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 878
Bpu1102I GCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 400
BpuMI CCSGG 3 cut(s) 60, 698, 793
BsaBI GATNNNNATC 1 cut(s) 486
BsaI GGTCTC 2 cut(s) 1004, 1142
BsaJI CCNNGG 1 cut(s) 935
BsaWI WCCGGW 1 cut(s) 627
Bsc4I CCNNNNNNNGG 4 cut(s) 126, 554, 791, 1252
Bse118I RCCGGY 2 cut(s) 574, 1205
Bse3DI GCAATG 2 cut(s) 507, 635
Bse8I GATNNNNATC 1 cut(s) 486
BseBI CCWGG 1 cut(s) 1368
BseDI CCNNGG 1 cut(s) 935
BseGI GGATG 3 cut(s) 59, 402, 693
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 4 cut(s) 126, 554, 791, 1252
BseMI GCAATG 2 cut(s) 507, 635
BseMII CTCAG 6 cut(s) 584, 839, 944, 1008, 1032, 1153
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 1087
BseXI GCAGC 4 cut(s) 97, 674, 751, 1342
BseYI CCCAGC 1 cut(s) 1079
BsgI GTGCAG 1 cut(s) 692
BshFI GGCC 5 cut(s) 458, 546, 847, 1005, 1209
BsiHKAI GWGCWC 2 cut(s) 277, 386
BsiHKCI CYCGRG 1 cut(s) 110
BsiSI CCGG 7 cut(s) 60, 91, 575, 628, 698, 792, 1206
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 4 cut(s) 126, 554, 791, 1252
BsmAI GTCTC 5 cut(s) 695, 834, 1004, 1142, 1290
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 5 cut(s) 458, 546, 847, 1005, 1209
Bso31I GGTCTC 2 cut(s) 1004, 1142
BsoBI CYCGRG 1 cut(s) 110
Bsp1286I GDGCHC 3 cut(s) 277, 386, 1087
Bsp143I GATC 5 cut(s) 307, 537, 1215, 1237, 1370
Bsp1720I GCTNAGC 1 cut(s) 570
BspACI CCGC 4 cut(s) 5, 498, 848, 1256
BspANI GGCC 5 cut(s) 458, 546, 847, 1005, 1209
BspCNI CTCAG 6 cut(s) 583, 838, 945, 1007, 1033, 1152
BspHI TCATGA 2 cut(s) 772, 889
BspPI GGATC 3 cut(s) 1210, 1245, 1378
BspQI GCTCTTC 1 cut(s) 265
BspTI CTTAAG 1 cut(s) 1186
BspTNI GGTCTC 2 cut(s) 1004, 1142
BsrDI GCAATG 2 cut(s) 507, 635
BsrFI RCCGGY 2 cut(s) 574, 1205
BssAI RCCGGY 2 cut(s) 574, 1205
BssECI CCNNGG 1 cut(s) 935
BssMI GATC 5 cut(s) 307, 537, 1215, 1237, 1370
BssT1I CCWWGG 1 cut(s) 935
Bst2UI CCWGG 1 cut(s) 1368
Bst4CI ACNGT 5 cut(s) 437, 679, 932, 982, 1300
Bst6I CTCTTC 1 cut(s) 265
BstAFI CTTAAG 1 cut(s) 1186
BstC8I GCNNGC 3 cut(s) 576, 1126, 1318
BstDEI CTNAG 7 cut(s) 570, 825, 953, 994, 1041, 1139, 1145
BstEII GGTNACC 1 cut(s) 1066
BstF5I GGATG 3 cut(s) 59, 402, 693
BstKTI GATC 5 cut(s) 310, 540, 1218, 1240, 1373
BstMAI GTCTC 5 cut(s) 695, 834, 1004, 1142, 1290
BstMBI GATC 5 cut(s) 307, 537, 1215, 1237, 1370
BstMWI GCNNNNNNNGC 6 cut(s) 82, 91, 506, 575, 923, 1277
BstNI CCWGG 1 cut(s) 1368
BstPAI GACNNNNGTC 1 cut(s) 54
BstPI GGTNACC 1 cut(s) 1066
BstSCI CCNGG 4 cut(s) 58, 696, 791, 1366
BstSLI GKGCMC 1 cut(s) 1087
BstV1I GCAGC 4 cut(s) 97, 674, 751, 1342
BstV2I GAAGAC 1 cut(s) 878
BsuRI GGCC 5 cut(s) 458, 546, 847, 1005, 1209
BtgZI GCGATG 1 cut(s) 1295
BtsCI GGATG 3 cut(s) 59, 402, 693
BtsI GCAGTG 2 cut(s) 704, 1239
BtsIMutI CAGTG 4 cut(s) 275, 704, 1085, 1239
Cac8I GCNNGC 3 cut(s) 576, 1126, 1318
CciI TCATGA 2 cut(s) 772, 889
Cfr10I RCCGGY 2 cut(s) 574, 1205
Cfr13I GGNCC 3 cut(s) 545, 1055, 1304
Csp6I GTAC 4 cut(s) 13, 516, 680, 978
CviAII CATG 3 cut(s) 737, 773, 890
CviQI GTAC 4 cut(s) 13, 516, 680, 978
DdeI CTNAG 7 cut(s) 570, 825, 953, 994, 1041, 1139, 1145
DpnI GATC 5 cut(s) 309, 539, 1217, 1239, 1372
DpnII GATC 5 cut(s) 307, 537, 1215, 1237, 1370
DrdI GACNNNNNNGTC 1 cut(s) 1282
DseDI GACNNNNNNGTC 1 cut(s) 1282
EaeI YGGCCR 1 cut(s) 845
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 935
Eco147I AGGCCT 1 cut(s) 458
Eco24I GRGCYC 1 cut(s) 386
Eco31I GGTCTC 2 cut(s) 1004, 1142
Eco32I GATATC 1 cut(s) 101
Eco47I GGWCC 2 cut(s) 1055, 1304
Eco53kI GAGCTC 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 110
Eco91I GGTNACC 1 cut(s) 1066
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 1055
EcoO65I GGTNACC 1 cut(s) 1066
EcoRII CCWGG 1 cut(s) 1366
EcoRV GATATC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 935
EcoT22I ATGCAT 2 cut(s) 466, 637
EcoT38I GRGCYC 1 cut(s) 386
ErhI CCWWGG 1 cut(s) 935
FaeI CATG 3 cut(s) 740, 776, 893
FalI AAGNNNNNCTT 4 cut(s) 597, 629, 805, 837
FaqI GGGAC 1 cut(s) 42
FatI CATG 3 cut(s) 736, 772, 889
FauNDI CATATG 1 cut(s) 1377
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 86, 688, 765, 848, 1257, 1356
FokI GGATG 3 cut(s) 66, 409, 680
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 6 cut(s) 86, 688, 765, 848, 1257, 1356
FspBI CTAG 1 cut(s) 1052
GluI GCNGC 6 cut(s) 86, 688, 765, 848, 1257, 1356
GsaI CCCAGC 1 cut(s) 1083
HaeIII GGCC 5 cut(s) 458, 546, 847, 1005, 1209
HapII CCGG 7 cut(s) 60, 91, 575, 628, 698, 792, 1206
Hin1II CATG 3 cut(s) 740, 776, 893
HindIII AAGCTT 1 cut(s) 1147
HinfI GANTC 5 cut(s) 608, 624, 743, 776, 1450
HpaII CCGG 7 cut(s) 60, 91, 575, 628, 698, 792, 1206
HphI GGTGA 1 cut(s) 1060
Hpy188I TCNGA 6 cut(s) 469, 907, 954, 1242, 1415, 1425
Hpy188III TCNNGA 6 cut(s) 47, 479, 773, 835, 890, 1393
Hpy99I CGWCG 2 cut(s) 53, 1450
HpyAV CCTTC 6 cut(s) 130, 184, 448, 790, 795, 1229
HpyCH4III ACNGT 5 cut(s) 437, 679, 932, 982, 1300
HpyCH4V TGCA 9 cut(s) 356, 464, 635, 709, 767, 899, 917, 1166, 1358
HpyF10VI GCNNNNNNNGC 6 cut(s) 82, 91, 506, 575, 923, 1277
HpyF3I CTNAG 7 cut(s) 570, 825, 953, 994, 1041, 1139, 1145
Hsp92II CATG 3 cut(s) 740, 776, 893
KroI GCCGGC 1 cut(s) 574
KroNI GCCGGC 1 cut(s) 576
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 5 cut(s) 307, 537, 1215, 1237, 1370
LguI GCTCTTC 1 cut(s) 265
LmnI GCTCC 2 cut(s) 73, 93
Lsp1109I GCAGC 4 cut(s) 97, 674, 751, 1342
LweI GCATC 4 cut(s) 473, 776, 1175, 1329
MaeI CTAG 1 cut(s) 1052
MaeIII GTNAC 2 cut(s) 673, 1066
MalI GATC 5 cut(s) 309, 539, 1217, 1239, 1372
MboI GATC 5 cut(s) 307, 537, 1215, 1237, 1370
MboII GAAGA 6 cut(s) 282, 330, 410, 850, 878, 1378
MfeI CAATTG 2 cut(s) 351, 402
MhlI GDGCHC 3 cut(s) 277, 386, 1087
MluCI AATT 8 cut(s) 156, 297, 351, 357, 388, 402, 841, 1159
MlyI GAGTC 1 cut(s) 1459
MmeI TCCRAC 3 cut(s) 9, 1282, 1393
Mph1103I ATGCAT 2 cut(s) 466, 637
MroNI GCCGGC 1 cut(s) 574
MroXI GAANNNNTTC 2 cut(s) 474, 820
MseI TTAA 3 cut(s) 1157, 1187, 1293
MspA1I CMGCKG 3 cut(s) 509, 850, 1310
MspCI CTTAAG 1 cut(s) 1186
MspI CCGG 7 cut(s) 60, 91, 575, 628, 698, 792, 1206
MspR9I CCNGG 4 cut(s) 60, 698, 793, 1368
MunI CAATTG 2 cut(s) 351, 402
MvaI CCWGG 1 cut(s) 1368
MwoI GCNNNNNNNGC 6 cut(s) 82, 91, 506, 575, 923, 1277
NaeI GCCGGC 1 cut(s) 576
NciI CCSGG 3 cut(s) 60, 698, 793
NdeI CATATG 1 cut(s) 1377
NdeII GATC 5 cut(s) 307, 537, 1215, 1237, 1370
NgoMIV GCCGGC 1 cut(s) 574
NlaIII CATG 3 cut(s) 740, 776, 893
NmeAIII GCCGAG 1 cut(s) 981
NmuCI GTSAC 2 cut(s) 673, 1066
NsiI ATGCAT 2 cut(s) 466, 637
PaeR7I CTCGAG 1 cut(s) 110
PagI TCATGA 2 cut(s) 772, 889
PceI AGGCCT 1 cut(s) 458
PciSI GCTCTTC 1 cut(s) 265
PdiI GCCGGC 1 cut(s) 576
PdmI GAANNNNTTC 2 cut(s) 474, 820
PfeI GAWTC 4 cut(s) 608, 624, 743, 776
PfoI TCCNGGA 1 cut(s) 696
PkrI GCNGC 6 cut(s) 87, 689, 766, 849, 1258, 1357
PleI GAGTC 1 cut(s) 1458
PpsI GAGTC 1 cut(s) 1458
PpuMI RGGWCCY 1 cut(s) 1055
PshAI GACNNNNGTC 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 1055
Psp6I CCWGG 1 cut(s) 1366
PspEI GGTNACC 1 cut(s) 1066
PspFI CCCAGC 1 cut(s) 1079
PspGI CCWGG 1 cut(s) 1366
PspPI GGNCC 3 cut(s) 545, 1055, 1304
PspPPI RGGWCCY 1 cut(s) 1055
PspXI VCTCGAGB 1 cut(s) 110
PvuII CAGCTG 2 cut(s) 509, 1310
RsaI GTAC 4 cut(s) 14, 517, 681, 979
RsaNI GTAC 4 cut(s) 13, 516, 680, 978
SacI GAGCTC 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 265
SaqAI TTAA 3 cut(s) 1157, 1187, 1293
SatI GCNGC 6 cut(s) 86, 688, 765, 848, 1257, 1356
Sau3AI GATC 5 cut(s) 307, 537, 1215, 1237, 1370
Sau96I GGNCC 3 cut(s) 545, 1055, 1304
ScaI AGTACT 2 cut(s) 517, 681
SchI GAGTC 1 cut(s) 1459
ScrFI CCNGG 4 cut(s) 60, 698, 793, 1368
SduI GDGCHC 3 cut(s) 277, 386, 1087
SfaNI GCATC 4 cut(s) 473, 776, 1175, 1329
Sfr274I CTCGAG 1 cut(s) 110
SinI GGWCC 2 cut(s) 1055, 1304
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 3 cut(s) 110, 379, 1186
SmoI CTYRAG 3 cut(s) 110, 379, 1186
Sse9I AATT 8 cut(s) 156, 297, 351, 357, 388, 402, 841, 1159
SseBI AGGCCT 1 cut(s) 458
SsiI CCGC 4 cut(s) 5, 498, 848, 1256
SspI AATATT 1 cut(s) 474
SspMI CTAG 1 cut(s) 1052
SstI GAGCTC 1 cut(s) 386
StuI AGGCCT 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 58, 696, 791, 1366
StyI CCWWGG 1 cut(s) 935
TaaI ACNGT 5 cut(s) 437, 679, 932, 982, 1300
TaqI TCGA 2 cut(s) 111, 1453
TasI AATT 8 cut(s) 156, 297, 351, 357, 388, 402, 841, 1159
TatI WGTACW 3 cut(s) 12, 515, 679
TauI GCSGC 2 cut(s) 850, 1259
TfiI GAWTC 4 cut(s) 608, 624, 743, 776
Tru1I TTAA 3 cut(s) 1157, 1187, 1293
Tru9I TTAA 3 cut(s) 1157, 1187, 1293
TscAI CASTG 4 cut(s) 282, 711, 1092, 1239
TseFI GTSAC 2 cut(s) 673, 1066
TseI GCWGC 4 cut(s) 85, 687, 764, 1355
Tsp45I GTSAC 2 cut(s) 673, 1066
TspDTI ATGAA 8 cut(s) 95, 467, 498, 682, 735, 789, 878, 984
TspGWI ACGGA 2 cut(s) 66, 230
TspRI CASTG 4 cut(s) 282, 711, 1092, 1239
Vha464I CTTAAG 1 cut(s) 1186
VpaK11BI GGWCC 2 cut(s) 1055, 1304
XapI RAATTY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 334
XhoI CTCGAG 1 cut(s) 110
XmnI GAANNNNTTC 2 cut(s) 474, 820
XspI CTAG 1 cut(s) 1052
ZrmI AGTACT 2 cut(s) 517, 681
Zsp2I ATGCAT 2 cut(s) 466, 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.