Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008916

Physical Location & Seq

Genomic Coordinates Reverse (-)

15764265 .. 15765371

Gene Structure 1107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGTTCTTGGAGGATCCACTTTCACTACGGCTTACGTCTCCGTTACTTCCAGAGGAGATGGAAAACTCATAGAGTTGTTTGCGGTAGTGGTGCAAGGTGTGACGGGCATAGGCGATAAGTTGTCTTGGCAAGGTATTCCTAATGGCGAGTTTTCGCTGGTTAGCCATCAAGTAATAATGACGAATGTAGAACGTTTTAGACGTCATATTAGAGAAAGTGAGATTTGCCAAGTGTGTAAAGCTGCTAGTGAAACAATAATTCATTTGCTGAGAGACTGCCCCGATGGATGGTATTTGGAGGAGCGAGTAAGGTTGGCCTACATTGTTCAGTATGGCGGTTTGGTGGAGTTGGAAGTGGGCGTCTCGTGGAAACTCGGGACTGGCCACTGCTTGGGGGTGATCCGATGGGGAGGTATTATGGCTGGGAGGGTTCACGCTGAACATAGGTATATGCTCAACAGCGACGGAAGAACTATGGGGGCTTTATCACAAGAAATTGGTAAGTCTGGGTTATTCACGTATATCGAGAAGCTAACCCGTCAGTCAGAAGGTTTTATAGTTAACCTTCTGACTGACGGGTTAGCAAACTATGCCTTTTTTTATAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 RVT_1 zf-CCHC_4

Protein Analysis

202

Amino Acids

22.4

Weight (kDa)

6.59

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43940
fragaria_vesca	FvH4_6g25562
pyrus_communis	pycom04g06860 pycom08g15580
rosa_chinensis	RchiOBHm_Chr1g0321741 RchiOBHm_Chr4g0394881 RchiOBHm_Chr4g0426651 RchiOBHm_Chr6g0253621
rosa_laevigata	RLG00000020413
rosa_multiflora	Rmu_sc0003895.1_g000034 Rmu_sc0010958.1_g000004 Rmu_sc0011261.1_g000002 Rmu_ssc0000474.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031210 Rroxscaffold_1G00048720 Rroxscaffold_2G00088920 Rroxscaffold_6G00409730
rosa_rugosa	Rorug02G0371000 Rorug07G0091500 Rorug07G0252000 Rorug07G0286400
rosa_wichuraiana	Rw5G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	2 cut(s)	83, 336
AclI	AACGTT	1 cut(s)	193
AclWI	GGATC	3 cut(s)	9, 22, 394
AcoI	YGGCCR	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	202, 360
AfiI	CCNNNNNNNGG	2 cut(s)	288, 391
AluBI	AGCT	2 cut(s)	242, 532
AluI	AGCT	2 cut(s)	242, 532
Alw26I	GTCTC	3 cut(s)	43, 267, 367
AlwI	GGATC	3 cut(s)	9, 22, 394
Ama87I	CYCGRG	1 cut(s)	374
AoxI	GGCC	2 cut(s)	315, 382
ApeKI	GCWGC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	409
AvaI	CYCGRG	1 cut(s)	374
BalI	TGGCCA	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	14
BauI	CACGAG	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	5 cut(s)	53, 174, 278, 282, 399
BceAI	ACGGC	1 cut(s)	45
BcoDI	GTCTC	3 cut(s)	43, 267, 367
BfaI	CTAG	1 cut(s)	246
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	519
BsaHI	GRCGYC	2 cut(s)	202, 360
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 391
Bse1I	ACTGG	1 cut(s)	385
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	288, 391
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	385
BseRI	GAGGAG	2 cut(s)	69, 314
BseXI	GCAGC	1 cut(s)	229
BseYI	CCCAGC	1 cut(s)	422
BshFI	GGCC	2 cut(s)	317, 384
BsiHKCI	CYCGRG	1 cut(s)	374
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	2 cut(s)	288, 391
BsmAI	GTCTC	3 cut(s)	43, 267, 367
BsmBI	CGTCTC	2 cut(s)	43, 367
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	317, 384
BsoBI	CYCGRG	1 cut(s)	374
Bsp143I	GATC	2 cut(s)	14, 399
BspACI	CCGC	2 cut(s)	83, 336
BspANI	GGCC	2 cut(s)	317, 384
BspCNI	CTCAG	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	3 cut(s)	9, 22, 394
BsrI	ACTGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	14, 399
BssNI	GRCGYC	2 cut(s)	202, 360
BssSI	CACGAG	1 cut(s)	364
Bst2BI	CACGAG	1 cut(s)	364
BstACI	GRCGYC	2 cut(s)	202, 360
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstBAI	YACGTR	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	269
BstF5I	GGATG	1 cut(s)	293
BstKTI	GATC	2 cut(s)	17, 402
BstMAI	GTCTC	3 cut(s)	43, 267, 367
BstMBI	GATC	2 cut(s)	14, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	14
BstYI	RGATCY	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	317, 384
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
CseI	GACGC	1 cut(s)	349
CviJI	RGCY	8 cut(s)	32, 165, 242, 317, 384, 422, 482, 532
CviKI_1	RGCY	8 cut(s)	32, 165, 242, 317, 384, 422, 482, 532
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	2 cut(s)	16, 401
DpnII	GATC	2 cut(s)	14, 399
EaeI	YGGCCR	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	374
Esp3I	CGTCTC	2 cut(s)	43, 367
FaqI	GGGAC	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	246
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	317, 384
HgaI	GACGC	1 cut(s)	349
Hin1I	GRCGYC	2 cut(s)	202, 360
HincII	GTYRAC	1 cut(s)	562
HindII	GTYRAC	1 cut(s)	562
HpaI	GTTAAC	1 cut(s)	562
HphI	GGTGA	1 cut(s)	409
Hpy166II	GTNNAC	2 cut(s)	433, 562
Hpy188I	TCNGA	3 cut(s)	404, 547, 570
Hpy188III	TCNNGA	3 cut(s)	51, 376, 526
Hpy8I	GTNNAC	2 cut(s)	433, 562
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	2 cut(s)	542, 575
HpyCH4IV	ACGT	4 cut(s)	36, 193, 202, 518
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	1 cut(s)	269
HpySE526I	ACGT	4 cut(s)	36, 193, 202, 518
Hsp92I	GRCGYC	2 cut(s)	202, 360
KspAI	GTTAAC	1 cut(s)	562
Kzo9I	GATC	2 cut(s)	14, 399
LmnI	GCTCC	1 cut(s)	301
LpnPI	CCDG	5 cut(s)	64, 143, 366, 408, 492
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	246
MaeII	ACGT	4 cut(s)	36, 193, 202, 518
MaeIII	GTNAC	2 cut(s)	43, 100
MalI	GATC	2 cut(s)	16, 401
MboI	GATC	2 cut(s)	14, 399
MboII	GAAGA	1 cut(s)	480
MflI	RGATCY	1 cut(s)	14
MlsI	TGGCCA	1 cut(s)	384
MluCI	AATT	2 cut(s)	258, 495
MluNI	TGGCCA	1 cut(s)	384
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	5 cut(s)	5, 47, 292, 404, 420
Mox20I	TGGCCA	1 cut(s)	384
MscI	TGGCCA	1 cut(s)	384
MseI	TTAA	1 cut(s)	561
Msp20I	TGGCCA	1 cut(s)	384
MwoI	GCNNNNNNNGC	1 cut(s)	590
NdeII	GATC	2 cut(s)	14, 399
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	519
Psp1406I	AACGTT	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	422
PspN4I	GGNNCC	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	561
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	14, 399
Sse9I	AATT	2 cut(s)	258, 495
SsiI	CCGC	2 cut(s)	83, 336
SspMI	CTAG	1 cut(s)	246
TaiI	ACGT	4 cut(s)	39, 196, 205, 521
TaqI	TCGA	1 cut(s)	525
TasI	AATT	2 cut(s)	258, 495
Tru1I	TTAA	1 cut(s)	561
Tru9I	TTAA	1 cut(s)	561
TscAI	CASTG	1 cut(s)	392
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	2 cut(s)	31, 480
TspRI	CASTG	1 cut(s)	392
Van91I	CCANNNNNTGG	1 cut(s)	391
XspI	CTAG	1 cut(s)	246
ZraI	GACGTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.