Rroxscaffold_1G00031210

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0008916
Physical Location & Seq
Forward (+)
43885166 .. 43891347
6182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00031210.1

Sequence Viewer

Length: 426 bp
ATGACTGCTGATCTTTTAGCCAAGAATAGCACTCTTCATGCTAAAGAAATATGCATCCTTCATAATCCTTCAGCTTTGATCACCGAAGCCCTATTAAGCAAGTTCACCCGTTGGGTCAATAGTTCGAGGTCACCGGGTCAAGGCACCGTTCACTTGTCACTAGACATCTTCCACGTGGAGGAGATTGTCCCCTTCATTATTGTTACACGACAAATTCTTGCTGCAGCACACGCTCTGACTTTTCAGCACTACACGACAAGGATTTGGCCTCCACGCCCCATGTTCATCGCGTCTCTCGCTCCACCAAGCTCGCTGATGTCACCCACGACATGGTGTGGGCCAAGCTGGCAACTAGCAAGCTTGGGTCATGAAGTTGGTCACGGGCTTCACCTTTTTCTTGGCCCCGGTCATGAAAGGCTAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.57

Weight (kDa)

7.96

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AccB7I CCANNNNNTGG 1 cut(s) 330
AccII CGCG 1 cut(s) 290
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 54
AcvI CACGTG 1 cut(s) 175
AfiI CCNNNNNNNGG 3 cut(s) 140, 178, 330
AluBI AGCT 4 cut(s) 74, 309, 345, 360
AluI AGCT 4 cut(s) 74, 309, 345, 360
Alw26I GTCTC 1 cut(s) 297
AoxI GGCC 3 cut(s) 266, 338, 400
ApeKI GCWGC 2 cut(s) 221, 224
ApoI RAATTY 1 cut(s) 213
AspS9I GGNCC 2 cut(s) 338, 401
AsuC2I CCSGG 2 cut(s) 135, 405
AsuHPI GGTGA 5 cut(s) 73, 97, 123, 312, 380
BanI GGYRCC 1 cut(s) 143
BbrPI CACGTG 1 cut(s) 175
BbvI GCAGC 2 cut(s) 208, 236
BclI TGATCA 1 cut(s) 78
BcnI CCSGG 2 cut(s) 135, 405
BcoDI GTCTC 1 cut(s) 297
BfaI CTAG 2 cut(s) 161, 353
BfmI CTRYAG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 346
BisI GCNGC 2 cut(s) 222, 225
BlsI GCNGC 2 cut(s) 223, 226
Bme1390I CCNGG 2 cut(s) 135, 405
BmgT120I GGNCC 2 cut(s) 338, 401
BmiI GGNNCC 2 cut(s) 145, 403
BmrFI CCNGG 2 cut(s) 135, 405
BmsI GCATC 1 cut(s) 63
BpuMI CCSGG 2 cut(s) 135, 405
BsaAI YACGTR 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 403
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 178, 330
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 1 cut(s) 54
BseLI CCNNNNNNNGG 3 cut(s) 140, 178, 330
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 2 cut(s) 208, 236
Bsh1236I CGCG 1 cut(s) 290
BshFI GGCC 3 cut(s) 268, 340, 402
BshNI GGYRCC 1 cut(s) 143
BsiSI CCGG 2 cut(s) 134, 405
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 140, 178, 330
BsmAI GTCTC 1 cut(s) 297
BsmBI CGTCTC 1 cut(s) 297
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 3 cut(s) 268, 340, 402
Bsp143I GATC 2 cut(s) 10, 78
BspANI GGCC 3 cut(s) 268, 340, 402
BspFNI CGCG 1 cut(s) 290
BspHI TCATGA 2 cut(s) 367, 409
BspLI GGNNCC 2 cut(s) 145, 403
BspMAI CTGCAG 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 143
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 2 cut(s) 10, 78
Bst4CI ACNGT 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 39
BstBAI YACGTR 1 cut(s) 175
BstC8I GCNNGC 3 cut(s) 311, 347, 358
BstEII GGTNACC 1 cut(s) 129
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 290
BstKTI GATC 2 cut(s) 13, 81
BstMAI GTCTC 1 cut(s) 297
BstMBI GATC 2 cut(s) 10, 78
BstMWI GCNNNNNNNGC 3 cut(s) 230, 296, 346
BstPI GGTNACC 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 133, 403
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 290
BstV1I GCAGC 2 cut(s) 208, 236
BsuRI GGCC 3 cut(s) 268, 340, 402
BtgZI GCGATG 1 cut(s) 271
BtsCI GGATG 1 cut(s) 54
Cac8I GCNNGC 3 cut(s) 311, 347, 358
CciI TCATGA 2 cut(s) 367, 409
Cfr13I GGNCC 2 cut(s) 338, 401
CseI GACGC 1 cut(s) 279
CviAII CATG 5 cut(s) 38, 280, 330, 368, 410
DpnI GATC 2 cut(s) 12, 80
DpnII GATC 2 cut(s) 10, 78
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 54
Eco72I CACGTG 1 cut(s) 175
Eco91I GGTNACC 1 cut(s) 129
EcoO65I GGTNACC 1 cut(s) 129
EcoT22I ATGCAT 1 cut(s) 56
Esp3I CGTCTC 1 cut(s) 297
FaeI CATG 5 cut(s) 41, 283, 333, 371, 413
FaiI YATR 7 cut(s) 39, 52, 63, 281, 331, 369, 411
FaqI GGGAC 1 cut(s) 173
FatI CATG 5 cut(s) 37, 279, 329, 367, 409
FbaI TGATCA 1 cut(s) 78
Fnu4HI GCNGC 2 cut(s) 222, 225
FokI GGATG 1 cut(s) 41
Fsp4HI GCNGC 2 cut(s) 222, 225
FspBI CTAG 2 cut(s) 161, 353
GluI GCNGC 2 cut(s) 222, 225
HaeIII GGCC 3 cut(s) 268, 340, 402
HapII CCGG 2 cut(s) 134, 405
HgaI GACGC 1 cut(s) 279
Hin1II CATG 5 cut(s) 41, 283, 333, 371, 413
HindIII AAGCTT 1 cut(s) 358
HpaII CCGG 2 cut(s) 134, 405
HphI GGTGA 5 cut(s) 73, 97, 123, 312, 380
Hpy166II GTNNAC 2 cut(s) 105, 151
Hpy188I TCNGA 2 cut(s) 237, 425
Hpy188III TCNNGA 2 cut(s) 368, 410
Hpy8I GTNNAC 2 cut(s) 105, 151
HpyAV CCTTC 3 cut(s) 68, 78, 202
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 54, 224
HpyF10VI GCNNNNNNNGC 3 cut(s) 230, 296, 346
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 5 cut(s) 41, 283, 333, 371, 413
Ksp22I TGATCA 1 cut(s) 78
Kzo9I GATC 2 cut(s) 10, 78
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 3 cut(s) 147, 331, 418
Lsp1109I GCAGC 2 cut(s) 208, 236
LweI GCATC 1 cut(s) 63
MaeI CTAG 2 cut(s) 161, 353
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 5 cut(s) 129, 156, 202, 318, 377
MalI GATC 2 cut(s) 12, 80
MboI GATC 2 cut(s) 10, 78
MboII GAAGA 2 cut(s) 26, 160
MluCI AATT 1 cut(s) 213
MnlI CCTC 3 cut(s) 120, 172, 279
Mph1103I ATGCAT 1 cut(s) 56
MseI TTAA 1 cut(s) 95
MspI CCGG 2 cut(s) 134, 405
MspR9I CCNGG 2 cut(s) 135, 405
MvnI CGCG 1 cut(s) 290
MwoI GCNNNNNNNGC 3 cut(s) 230, 296, 346
NciI CCSGG 2 cut(s) 135, 405
NdeII GATC 2 cut(s) 10, 78
NlaIII CATG 5 cut(s) 41, 283, 333, 371, 413
NlaIV GGNNCC 2 cut(s) 145, 403
NmuCI GTSAC 4 cut(s) 129, 156, 318, 377
NsiI ATGCAT 1 cut(s) 56
PagI TCATGA 2 cut(s) 367, 409
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 2 cut(s) 223, 226
PmaCI CACGTG 1 cut(s) 175
PmlI CACGTG 1 cut(s) 175
Ppu21I YACGTR 1 cut(s) 175
PspCI CACGTG 1 cut(s) 175
PspEI GGTNACC 1 cut(s) 129
PspN4I GGNNCC 2 cut(s) 145, 403
PspPI GGNCC 2 cut(s) 338, 401
PstI CTGCAG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 95
SatI GCNGC 2 cut(s) 222, 225
Sau3AI GATC 2 cut(s) 10, 78
Sau96I GGNCC 2 cut(s) 338, 401
ScrFI CCNGG 2 cut(s) 135, 405
SetI ASST 7 cut(s) 76, 131, 177, 311, 347, 362, 393
SfaNI GCATC 1 cut(s) 63
SfcI CTRYAG 1 cut(s) 222
Sse9I AATT 1 cut(s) 213
SspMI CTAG 2 cut(s) 161, 353
StyD4I CCNGG 2 cut(s) 133, 403
TaaI ACNGT 1 cut(s) 148
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 125
TasI AATT 1 cut(s) 213
Tru1I TTAA 1 cut(s) 95
Tru9I TTAA 1 cut(s) 95
TseFI GTSAC 4 cut(s) 129, 156, 318, 377
TseI GCWGC 2 cut(s) 221, 224
Tsp45I GTSAC 4 cut(s) 129, 156, 318, 377
TspDTI ATGAA 6 cut(s) 26, 50, 184, 274, 384, 426
Van91I CCANNNNNTGG 1 cut(s) 330
XapI RAATTY 1 cut(s) 213
XspI CTAG 2 cut(s) 161, 353
Zsp2I ATGCAT 1 cut(s) 56
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.