RchiOBHm_Chr6g0253621

Ribonuclease H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008916
Physical Location & Seq
Forward (+)
8735494 .. 8736701
1208 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22743

Sequence Viewer

Length: 330 bp
ATGATTCTTGTCCAGATTGTCCTTAAGGAAGAGAGACTCTCTCACTTGTTCAAAGACTGCACTGCCATTCAATGTATCTGGAACTCCTTCACTATACCTGGTTATGTCAGGATAACTTTCAACATGGACTGGGGAGGATGGCTCATGGCTCATCTGCATTGCTCAGCAAACTGTGAACTTGGCTTCCATTGGAATACTCTGAAGACGCTGGTTTATCACATGTTTTTGATTCTGGCCAACTCCCTTCTAATTCATTCATCTCTAATGCTGCTAATGAATGGTTCAATGCTCAGGCCATATGGTGAGTTACCTAGAACCTATTATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

109

Amino Acids

12.71

Weight (kDa)

7.75

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 234
AcuI CTGAAG 1 cut(s) 221
AflII CTTAAG 1 cut(s) 23
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 4 cut(s) 52, 71, 121, 285
AjnI CCWGG 1 cut(s) 97
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
Alw26I GTCTC 1 cut(s) 28
AoxI GGCC 2 cut(s) 234, 293
ApeKI GCWGC 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 314
BalI TGGCCA 1 cut(s) 236
BbsI GAAGAC 1 cut(s) 209
BbvI GCAGC 1 cut(s) 255
BccI CCATC 1 cut(s) 132
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 23
BisI GCNGC 1 cut(s) 269
BlpI GCTNAGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 270
Bme1390I CCNGG 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 99
BmrI ACTGGG 1 cut(s) 139
BmuI ACTGGG 1 cut(s) 139
BpiI GAAGAC 1 cut(s) 209
BplI GAGNNNNNCTC 6 cut(s) 23, 55, 25, 57, 126, 158
Bpu10I CCTNAGC 1 cut(s) 290
Bpu1102I GCTNAGC 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 177, 304
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 1 cut(s) 255
BsgI GTGCAG 1 cut(s) 43
BshFI GGCC 2 cut(s) 236, 295
BsmAI GTCTC 1 cut(s) 28
BsnI GGCC 2 cut(s) 236, 295
Bsp1720I GCTNAGC 1 cut(s) 163
BspANI GGCC 2 cut(s) 236, 295
BspCNI CTCAG 2 cut(s) 176, 303
BspTI CTTAAG 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 157
BsrI ACTGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 24
BstAFI CTTAAG 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 163, 290
BstF5I GGATG 1 cut(s) 143
BstMAI GTCTC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 255
BstV2I GAAGAC 1 cut(s) 209
BsuRI GGCC 2 cut(s) 236, 295
BtsCI GGATG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
CseI GACGC 1 cut(s) 214
CsiI ACCWGGT 1 cut(s) 97
CviAII CATG 3 cut(s) 124, 145, 220
CviJI RGCY 5 cut(s) 142, 149, 183, 236, 295
CviKI_1 RGCY 5 cut(s) 142, 149, 183, 236, 295
DdeI CTNAG 2 cut(s) 163, 290
EaeI YGGCCR 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 3 cut(s) 127, 148, 223
FaiI YATR 8 cut(s) 95, 105, 125, 146, 221, 298, 300, 324
FatI CATG 3 cut(s) 123, 144, 219
FauNDI CATATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 269
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 1 cut(s) 269
FspBI CTAG 1 cut(s) 312
GluI GCNGC 1 cut(s) 269
HaeIII GGCC 2 cut(s) 236, 295
HgaI GACGC 1 cut(s) 214
Hin1II CATG 3 cut(s) 127, 148, 223
HinfI GANTC 3 cut(s) 4, 36, 229
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 176
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 3 cut(s) 13, 79, 109
Hpy8I GTNNAC 1 cut(s) 176
HpyAV CCTTC 2 cut(s) 97, 254
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 2 cut(s) 60, 157
HpyF3I CTNAG 2 cut(s) 163, 290
Hsp92II CATG 3 cut(s) 127, 148, 223
LpnPI CCDG 9 cut(s) 26, 64, 84, 94, 111, 115, 194, 218, 277
Lsp1109I GCAGC 1 cut(s) 255
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 1 cut(s) 306
MboII GAAGA 2 cut(s) 41, 214
MlsI TGGCCA 1 cut(s) 236
MluCI AATT 1 cut(s) 249
MluNI TGGCCA 1 cut(s) 236
MlyI GAGTC 1 cut(s) 30
MnlI CCTC 1 cut(s) 128
Mox20I TGGCCA 1 cut(s) 236
MroXI GAANNNNTTC 1 cut(s) 86
MscI TGGCCA 1 cut(s) 236
MseI TTAA 2 cut(s) 24, 328
Msp20I TGGCCA 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 23
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
NdeI CATATG 1 cut(s) 298
NlaIII CATG 3 cut(s) 127, 148, 223
NspI RCATGY 1 cut(s) 223
PciI ACATGT 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 2 cut(s) 4, 229
PkrI GCNGC 1 cut(s) 270
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
PscI ACATGT 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
SaqAI TTAA 2 cut(s) 24, 328
SatI GCNGC 1 cut(s) 269
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 1 cut(s) 99
SetI ASST 3 cut(s) 100, 313, 320
SexAI ACCWGGT 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 249
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 173
TasI AATT 1 cut(s) 249
TfiI GAWTC 2 cut(s) 4, 229
Tru1I TTAA 2 cut(s) 24, 328
Tru9I TTAA 2 cut(s) 24, 328
TscAI CASTG 1 cut(s) 67
TseI GCWGC 1 cut(s) 268
TspDTI ATGAA 3 cut(s) 242, 246, 290
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 23
XceI RCATGY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.