Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008916

Physical Location & Seq

Genomic Coordinates Reverse (-)

64758372 .. 64758949

Gene Structure 578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020413

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCAGAACCTGTACATTTCAGCGCCCTTCGCTTTATGGCCATCAACCACCCAAGGCCATCCCGAGTCACTTGCCGACCCTTGCAATCCCAATTGTCAACTTTGCTGATAGTGGTAGGCATTGCTAGCTGTTTAGGCTTCCCCAAGGTTGAGATTGTGGATGCTCCTCAATGGTTCGCTGGTGGGTTGTGTTTGTTGATGAATGATGAAAAAGTGGCTGTTGATATTCCAGGTACCACAGATCAATTCACTGCTGCTCACGTTTCTTATCCTTGCAAGAGGCCCTGGCTTTTCTGTGCGAGTTATGGTGGCCCTTGTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283 zf-CCHC_4

Protein Analysis

109

Amino Acids

11.82

Weight (kDa)

7.62

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43940
fragaria_vesca	FvH4_6g25562
pyrus_communis	pycom04g06860 pycom08g15580
rosa_chinensis	RchiOBHm_Chr1g0321741 RchiOBHm_Chr4g0394881 RchiOBHm_Chr4g0426651 RchiOBHm_Chr6g0253621
rosa_laevigata	RLG00000020413
rosa_multiflora	Rmu_sc0003895.1_g000034 Rmu_sc0010958.1_g000004 Rmu_sc0011261.1_g000002 Rmu_ssc0000474.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031210 Rroxscaffold_1G00048720 Rroxscaffold_2G00088920 Rroxscaffold_6G00409730
rosa_rugosa	Rorug02G0371000 Rorug07G0091500 Rorug07G0252000 Rorug07G0286400
rosa_wichuraiana	Rw5G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	233
AccB1I	GGYRCC	1 cut(s)	233
AcoI	YGGCCR	1 cut(s)	39
AfaI	GTAC	2 cut(s)	15, 235
AjnI	CCWGG	2 cut(s)	229, 284
AluBI	AGCT	1 cut(s)	129
AluI	AGCT	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	4 cut(s)	39, 56, 281, 310
ApeKI	GCWGC	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	233
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	2 cut(s)	282, 311
AsuNHI	GCTAGC	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	2 cut(s)	50, 67
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BciT130I	CCWGG	2 cut(s)	231, 286
BfaI	CTAG	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	27
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	231, 286
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	282, 311
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	2 cut(s)	231, 286
BmsI	GCATC	1 cut(s)	151
BmtI	GCTAGC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	53, 144, 284
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	231, 286
BseDI	CCNNGG	3 cut(s)	53, 144, 284
BseGI	GGATG	2 cut(s)	59, 166
BseMI	GCAATG	1 cut(s)	120
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	4 cut(s)	41, 58, 283, 312
BshNI	GGYRCC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	63
BsnI	GGCC	4 cut(s)	41, 58, 283, 312
BsoBI	CYCGRG	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	13
Bsp143I	GATC	1 cut(s)	241
BspANI	GGCC	4 cut(s)	41, 58, 283, 312
BspLI	GGNNCC	1 cut(s)	235
BspOI	GCTAGC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	120
BsrGI	TGTACA	1 cut(s)	13
BssECI	CCNNGG	3 cut(s)	53, 144, 284
BssMI	GATC	1 cut(s)	241
BssT1I	CCWWGG	2 cut(s)	53, 144
Bst2UI	CCWGG	2 cut(s)	231, 286
BstAUI	TGTACA	1 cut(s)	13
BstC8I	GCNNGC	1 cut(s)	127
BstF5I	GGATG	2 cut(s)	59, 166
BstH2I	RGCGCY	1 cut(s)	27
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 126, 135
BstNI	CCWGG	2 cut(s)	231, 286
BstSCI	CCNGG	2 cut(s)	229, 284
BstV1I	GCAGC	1 cut(s)	241
BsuRI	GGCC	4 cut(s)	41, 58, 283, 312
BtsCI	GGATG	2 cut(s)	59, 166
BtsI	GCAGTG	1 cut(s)	249
BtsIMutI	CAGTG	1 cut(s)	249
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	11
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	282, 311
Csp6I	GTAC	2 cut(s)	14, 234
CviJI	RGCY	8 cut(s)	41, 58, 129, 138, 218, 283, 289, 312
CviKI_1	RGCY	8 cut(s)	41, 58, 129, 138, 218, 283, 289, 312
CviQI	GTAC	2 cut(s)	14, 234
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	53, 144
Eco88I	CYCGRG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	229, 284
EcoT14I	CCWWGG	2 cut(s)	53, 144
ErhI	CCWWGG	2 cut(s)	53, 144
FaiI	YATR	2 cut(s)	38, 306
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	46, 173
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	27
HaeIII	GGCC	4 cut(s)	41, 58, 283, 312
HhaI	GCGC	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HinfI	GANTC	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	2 cut(s)	85, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 126, 135
HpySE526I	ACGT	1 cut(s)	261
HspAI	GCGC	1 cut(s)	24
KpnI	GGTACC	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	1 cut(s)	169
LpnPI	CCDG	6 cut(s)	24, 165, 216, 243, 271, 298
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MfeI	CAATTG	1 cut(s)	92
MlsI	TGGCCA	1 cut(s)	41
MluCI	AATT	2 cut(s)	92, 245
MluNI	TGGCCA	1 cut(s)	41
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	2 cut(s)	177, 273
Mox20I	TGGCCA	1 cut(s)	41
MscI	TGGCCA	1 cut(s)	41
Msp20I	TGGCCA	1 cut(s)	41
MspR9I	CCNGG	2 cut(s)	231, 286
MunI	CAATTG	1 cut(s)	92
MvaI	CCWGG	2 cut(s)	231, 286
MwoI	GCNNNNNNNGC	3 cut(s)	30, 126, 135
NdeII	GATC	1 cut(s)	241
NheI	GCTAGC	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
Psp6I	CCWGG	2 cut(s)	229, 284
PspGI	CCWGG	2 cut(s)	229, 284
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	282, 311
PstNI	CAGNNNCTG	1 cut(s)	11
RsaI	GTAC	2 cut(s)	15, 235
RsaNI	GTAC	2 cut(s)	14, 234
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	2 cut(s)	282, 311
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	2 cut(s)	231, 286
SetI	ASST	5 cut(s)	13, 131, 150, 235, 264
SfaNI	GCATC	1 cut(s)	151
Sse9I	AATT	2 cut(s)	92, 245
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	229, 284
StyI	CCWWGG	2 cut(s)	53, 144
TaiI	ACGT	1 cut(s)	264
TasI	AATT	2 cut(s)	92, 245
TatI	WGTACW	1 cut(s)	13
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	1 cut(s)	254
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	215, 222
TspRI	CASTG	1 cut(s)	256
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.