RchiOBHm_Chr4g0426651

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0008916
Physical Location & Seq
Forward (+)
52107602 .. 52108680
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39567

Sequence Viewer

Length: 222 bp
ATGGAAACTGGAAAAGGTATCTGGGAGCTTATTCATCCTAAATTGAAAATCTTCTCTTGGCTCCTTGTTAGATGGAGACTTTTGACTAATGTACACCGAGTTTATAGGCACCTTACTATGAATCCAAAGTGTAAACATTGCCCTGGCAACCTGAGTCTTATGATTCATTTGTTCAGGGATACATGCCATTTGGAATGGCTGCTACCATTACTAGGACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

73

Amino Acids

8.78

Weight (kDa)

9.81

Isoelectric Point (pI)

17.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 7 - 60 1e-05 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 108
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 1 cut(s) 28
AluI AGCT 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 70
ApeKI GCWGC 1 cut(s) 199
Asp700I GAANNNNTTC 1 cut(s) 50
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 186
BccI CCATC 1 cut(s) 66
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 1 cut(s) 212
BfuI GTATCC 1 cut(s) 172
BisI GCNGC 1 cut(s) 200
BlsI GCNGC 1 cut(s) 201
Bme1390I CCNGG 1 cut(s) 144
BmiI GGNNCC 2 cut(s) 62, 110
BmrFI CCNGG 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 13
Bse3DI GCAATG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 13
BseXI GCAGC 1 cut(s) 186
BshNI GGYRCC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 70
Bsp1407I TGTACA 1 cut(s) 91
BspCNI CTCAG 1 cut(s) 144
BspLI GGNNCC 2 cut(s) 62, 110
BspT107I GGYRCC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 13
BssECI CCNNGG 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 1 cut(s) 219
BstAUI TGTACA 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 70
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 186
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 34
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 183
CviJI RGCY 3 cut(s) 28, 61, 199
CviKI_1 RGCY 3 cut(s) 28, 61, 199
CviQI GTAC 1 cut(s) 92
DdeI CTNAG 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 142
FaeI CATG 1 cut(s) 186
FaiI YATR 4 cut(s) 105, 119, 161, 184
FatI CATG 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 200
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 200
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 186
HinfI GANTC 3 cut(s) 121, 154, 163
Hpy166II GTNNAC 2 cut(s) 94, 134
Hpy8I GTNNAC 2 cut(s) 94, 134
HpyCH4III ACNGT 1 cut(s) 219
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 1 cut(s) 186
LmnI GCTCC 2 cut(s) 25, 66
LpnPI CCDG 5 cut(s) 7, 129, 156, 160, 164
Lsp1109I GCAGC 1 cut(s) 186
MaeI CTAG 1 cut(s) 212
MboII GAAGA 1 cut(s) 43
MluCI AATT 1 cut(s) 41
MlyI GAGTC 1 cut(s) 163
MroXI GAANNNNTTC 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
NlaIII CATG 1 cut(s) 186
NlaIV GGNNCC 2 cut(s) 62, 110
NspI RCATGY 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 2 cut(s) 121, 163
PkrI GCNGC 1 cut(s) 201
PleI GAGTC 1 cut(s) 162
PpsI GAGTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 62, 110
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SatI GCNGC 1 cut(s) 200
SchI GAGTC 1 cut(s) 163
ScrFI CCNGG 1 cut(s) 144
SetI ASST 4 cut(s) 19, 30, 114, 153
Sse9I AATT 1 cut(s) 41
SspMI CTAG 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 1 cut(s) 219
TasI AATT 1 cut(s) 41
TatI WGTACW 1 cut(s) 91
TfiI GAWTC 2 cut(s) 121, 163
TseI GCWGC 1 cut(s) 199
TspDTI ATGAA 3 cut(s) 23, 134, 155
XceI RCATGY 1 cut(s) 186
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.