Ribonuclease H
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G43940 |
| fragaria_vesca | FvH4_6g25562 |
| pyrus_communis | pycom04g06860 pycom08g15580 |
| rosa_chinensis | RchiOBHm_Chr1g0321741 RchiOBHm_Chr4g0394881 RchiOBHm_Chr4g0426651 RchiOBHm_Chr6g0253621 |
| rosa_laevigata | RLG00000020413 |
| rosa_multiflora | Rmu_sc0003895.1_g000034 Rmu_sc0010958.1_g000004 Rmu_sc0011261.1_g000002 Rmu_ssc0000474.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00031210 Rroxscaffold_1G00048720 Rroxscaffold_2G00088920 Rroxscaffold_6G00409730 |
| rosa_rugosa | Rorug02G0371000 Rorug07G0091500 Rorug07G0252000 Rorug07G0286400 |
| rosa_wichuraiana | Rw5G037290 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 327 |
| AgsI | TTSAA | 1 cut(s) | 227 |
| AjnI | CCWGG | 1 cut(s) | 328 |
| AluBI | AGCT | 1 cut(s) | 194 |
| AluI | AGCT | 1 cut(s) | 194 |
| ApeKI | GCWGC | 1 cut(s) | 289 |
| AsuHPI | GGTGA | 1 cut(s) | 104 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 309, 341 |
| BbvI | GCAGC | 1 cut(s) | 276 |
| BccI | CCATC | 2 cut(s) | 89, 207 |
| BciT130I | CCWGG | 1 cut(s) | 330 |
| BfaI | CTAG | 2 cut(s) | 314, 323 |
| BisI | GCNGC | 1 cut(s) | 290 |
| BlsI | GCNGC | 1 cut(s) | 291 |
| Bme1390I | CCNGG | 1 cut(s) | 330 |
| BmrFI | CCNGG | 1 cut(s) | 330 |
| BsaJI | CCNNGG | 1 cut(s) | 204 |
| Bse118I | RCCGGY | 1 cut(s) | 4 |
| BseBI | CCWGG | 1 cut(s) | 330 |
| BseDI | CCNNGG | 1 cut(s) | 204 |
| BseGI | GGATG | 2 cut(s) | 218, 225 |
| BseXI | GCAGC | 1 cut(s) | 276 |
| BsgI | GTGCAG | 1 cut(s) | 275 |
| BsiSI | CCGG | 1 cut(s) | 5 |
| BslFI | GGGAC | 1 cut(s) | 140 |
| BsmFI | GGGAC | 1 cut(s) | 140 |
| BsrFI | RCCGGY | 1 cut(s) | 4 |
| BssAI | RCCGGY | 1 cut(s) | 4 |
| BssECI | CCNNGG | 1 cut(s) | 204 |
| BssT1I | CCWWGG | 1 cut(s) | 204 |
| Bst2UI | CCWGG | 1 cut(s) | 330 |
| Bst4CI | ACNGT | 1 cut(s) | 25 |
| Bst6I | CTCTTC | 1 cut(s) | 140 |
| BstC8I | GCNNGC | 1 cut(s) | 201 |
| BstDEI | CTNAG | 1 cut(s) | 130 |
| BstF5I | GGATG | 2 cut(s) | 218, 225 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 200 |
| BstNI | CCWGG | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 328 |
| BstV1I | GCAGC | 1 cut(s) | 276 |
| BtsCI | GGATG | 2 cut(s) | 218, 225 |
| Cac8I | GCNNGC | 1 cut(s) | 201 |
| Cfr10I | RCCGGY | 1 cut(s) | 4 |
| Csp6I | GTAC | 1 cut(s) | 326 |
| CviAII | CATG | 3 cut(s) | 16, 184, 250 |
| CviJI | RGCY | 2 cut(s) | 151, 194 |
| CviKI_1 | RGCY | 2 cut(s) | 151, 194 |
| CviQI | GTAC | 1 cut(s) | 326 |
| DdeI | CTNAG | 1 cut(s) | 130 |
| Eam1104I | CTCTTC | 1 cut(s) | 140 |
| EarI | CTCTTC | 1 cut(s) | 140 |
| Eco130I | CCWWGG | 1 cut(s) | 204 |
| EcoRII | CCWGG | 1 cut(s) | 328 |
| EcoT14I | CCWWGG | 1 cut(s) | 204 |
| ErhI | CCWWGG | 1 cut(s) | 204 |
| FaeI | CATG | 3 cut(s) | 19, 187, 253 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 183, 215 |
| FaqI | GGGAC | 1 cut(s) | 140 |
| FatI | CATG | 3 cut(s) | 15, 183, 249 |
| Fnu4HI | GCNGC | 1 cut(s) | 290 |
| FokI | GGATG | 2 cut(s) | 225, 232 |
| Fsp4HI | GCNGC | 1 cut(s) | 290 |
| FspBI | CTAG | 2 cut(s) | 314, 323 |
| GluI | GCNGC | 1 cut(s) | 290 |
| HapII | CCGG | 1 cut(s) | 5 |
| Hin1II | CATG | 3 cut(s) | 19, 187, 253 |
| HinfI | GANTC | 2 cut(s) | 31, 223 |
| HpaII | CCGG | 1 cut(s) | 5 |
| HphI | GGTGA | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 2 cut(s) | 112, 140 |
| Hpy188III | TCNNGA | 1 cut(s) | 28 |
| Hpy8I | GTNNAC | 2 cut(s) | 112, 140 |
| HpyAV | CCTTC | 2 cut(s) | 100, 230 |
| HpyCH4III | ACNGT | 1 cut(s) | 25 |
| HpyCH4V | TGCA | 2 cut(s) | 19, 292 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 200 |
| HpyF3I | CTNAG | 1 cut(s) | 130 |
| Hsp92II | CATG | 3 cut(s) | 19, 187, 253 |
| LmnI | GCTCC | 1 cut(s) | 246 |
| LpnPI | CCDG | 3 cut(s) | 18, 48, 315 |
| Lsp1109I | GCAGC | 1 cut(s) | 276 |
| MaeI | CTAG | 2 cut(s) | 314, 323 |
| MboII | GAAGA | 1 cut(s) | 157 |
| MluCI | AATT | 1 cut(s) | 121 |
| MnlI | CCTC | 5 cut(s) | 49, 141, 210, 294, 326 |
| MseI | TTAA | 1 cut(s) | 168 |
| MspI | CCGG | 1 cut(s) | 5 |
| MspR9I | CCNGG | 1 cut(s) | 330 |
| MvaI | CCWGG | 1 cut(s) | 330 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 200 |
| NlaIII | CATG | 3 cut(s) | 19, 187, 253 |
| PfeI | GAWTC | 2 cut(s) | 31, 223 |
| PkrI | GCNGC | 1 cut(s) | 291 |
| Psp6I | CCWGG | 1 cut(s) | 328 |
| PspGI | CCWGG | 1 cut(s) | 328 |
| RsaI | GTAC | 1 cut(s) | 327 |
| RsaNI | GTAC | 1 cut(s) | 326 |
| SaqAI | TTAA | 1 cut(s) | 168 |
| SatI | GCNGC | 1 cut(s) | 290 |
| ScrFI | CCNGG | 1 cut(s) | 330 |
| SetI | ASST | 5 cut(s) | 111, 117, 196, 210, 331 |
| Sse9I | AATT | 1 cut(s) | 121 |
| SspI | AATATT | 2 cut(s) | 175, 280 |
| SspMI | CTAG | 2 cut(s) | 314, 323 |
| StyD4I | CCNGG | 1 cut(s) | 328 |
| StyI | CCWWGG | 1 cut(s) | 204 |
| TaaI | ACNGT | 1 cut(s) | 25 |
| TaqI | TCGA | 1 cut(s) | 296 |
| TasI | AATT | 1 cut(s) | 121 |
| TfiI | GAWTC | 2 cut(s) | 31, 223 |
| Tru1I | TTAA | 1 cut(s) | 168 |
| Tru9I | TTAA | 1 cut(s) | 168 |
| TseI | GCWGC | 1 cut(s) | 289 |
| TspDTI | ATGAA | 2 cut(s) | 200, 249 |
| XspI | CTAG | 2 cut(s) | 314, 323 |