Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008916

Physical Location & Seq

Genomic Coordinates Reverse (-)

47345264 .. 47349397

Gene Structure 4134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0371000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGAATTCACGCGAGGAAGAAATGGGAATCAGAGGTAAAGCACAGAAGAGAGAAGAGGCGGTGGCGGTGGCCATCGACAAGGACAAAGGAAGTCAATATGCTATCAAATGGACTGTTGATCATCTTCTCAGCAGAGGCCAAGCTCTCACATTGCTTCATGTTAAACAGACTACAAATGCAGTTCCCAACCAATCCAGAGGCACGACTTTTATGTCTGAGGATGTTGCAAAGGTGTACAAAAAACAACTTGATGTTCAAGCAAAAGAGTTGTTTCTTCCATTCCGTTGCTTTTGCACCAAAAAGGCTATAAATTGCAATGAAGTCATACTTGAGGATACAGATATAACAAGAGCAATCATCAACTACGTCAATGCCAATGGGATTGAGATTTTGGTACTTGGTTCTCCATCAAAAAGCAGCTTGTTCAGATTCATATCTACAGACGTTCCAACCACCGTGGCGAAAAGGGCACCAGACTGTTGCACTGTTTATGTTATTGGGAAAGGAAAGATCTCATATGTGCGATCCGCTACCAGCTCATTGCCCCCAAAAGCTCCATCGAGTAATCAAATACAGCACCAAGCTAGCAACGTTTCGGATTCAAGTGATACACGAAGCACACCCAGCCAGAACTTTAGAGGACCCGAGCAGAAACAGCATCCGCCCCATACCCAGCAAAATGACAATGCAATCCTGTCACCATTCTCAAGAGGAAAAGCTTCAATGAACAAAACACATGAGCTATCACCCGAGAGTGATATATCGTTTGTGAGCAGTAACGGAAGGTCAAGCACTGATAACAGAAGCTCTACATCATCTTACTCTGGAACCAAGTTCATTGACATGGGCTCTGCCCACAATGACTTCACATCATGCTCAATGGATAGTGGCAAATCGTGGTCATCACAGAACATGGATGGAGTGGAATCGGAGATGAGGAGGCTTATGCTAGAGCTCAAGCAAACAAGGGACATGTACAATACAGCCTGCAAGGAGGCACTCGTAGCACAAAATATGGCAACAGAAGTAAACCAATGGAAAAGGGCAGAAGAAATAAGATTAGAAGAGGCAAAATTAGCCGAGGAAGTTGCAATGGCAGCTGCAGAGAAGGAGAAAGCCAAATGTATGGCAGCCATCGAAGCAGCACAAGCAGCTCAAAGGGTTGCAGAATTCGAGGCACTGAAAAGGAAGAGTGCAGAAATGAAAGCCCTTAAAGAAGCTGAAGACAGGAAGAAGGCACAAGAAGGAATGACATTTGATGTCAGGTACAGGAAGTACACACTCGAAGAGATTGAAGCAGCAACACACAGCTTCTCAGGTAGTCTCAAGATTGGGGAAGGAGGCTATGGTCCTGTGTATAAAGGTGAACTAGACCATACATCTGTGGCCATAAAAGTTCTACGTCCAGATGCAGCTCAAGGGCATTCACAGTTCAAGCGAGAGGTGGATGTGTTGAGCTGCATACGACATCCAAACATGGTCCTCCTTCTTGGAGCATGTCCCGAGTACGGTTGCCTTGTCTACGAGTACATGGCTAATGGTAGCTTAGAAGATCGTCTCTTCCGGAAAGGTAATACCCCAGCTATTCCTTGGCATCTAAGGTTCCGAATTGCAGCAGAAATTGCCACAGGGCTTTTGTTCCTCCATCAGAGCAAGCCAGAACCCCTTGTACACCGTGACCTTAAACCCGGAAATATTTTGCTGGACCATAACTATGTCAGCAAGATTAGTGATGTAGGTTTGGCTAGACTTGTCCCTCCATCAGTAGCCGACTCTGTCACTCAGTATTACATGACATCAACAGCAGGAACATTCTGCTATATCGATCCAGAGTATCAGCAAACCGGCATGCTTGGAACAAAATCTGACATCTACTCACTTGGAGTCATGCTTCTGCAAATCATAACAGCCAAGCCACCAATGGGTTTGACACATCATGTTGAGAGGGCTATTGAGAAAGGGACCTTTGCTGACATGCTTGACCCTGCTGTTAAAGACTGGCCAGTTGAGGAGGCCTTGAACTTTGCCAGGCTAGCTTTACAGTGTGCTGAAATGAGGCGAAAAGACAGACCGGATCTTGGGAAGGTTGTGCTACCTGAGCTTAACAGGTTGAGAGCGCTTGGCCAAGATAGCATGAATGCTAAGATGTTTGGTGGCGGTGAAGTATTCTCTCCAAGAAAAGGCCGATTTTCCACCGGACAATTACAGGATGTGATGAGTGACCCCGATCTACGACAATTTGGTTATGATAGCTCAAGGAGTCAATCAAGCACATCATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

760

Amino Acids

84.26

Weight (kDa)

8.24

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	21 - 158	3.1e-12	Universal stress protein family
Pkinase	PF00069	443 - 691	4.8e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	443 - 696	6.3e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008916)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43940
fragaria_vesca	FvH4_6g25562
pyrus_communis	pycom04g06860 pycom08g15580
rosa_chinensis	RchiOBHm_Chr1g0321741 RchiOBHm_Chr4g0394881 RchiOBHm_Chr4g0426651 RchiOBHm_Chr6g0253621
rosa_laevigata	RLG00000020413
rosa_multiflora	Rmu_sc0003895.1_g000034 Rmu_sc0010958.1_g000004 Rmu_sc0011261.1_g000002 Rmu_ssc0000474.1_g000005
rosa_roxburghii	Rroxscaffold_1G00031210 Rroxscaffold_1G00048720 Rroxscaffold_2G00088920 Rroxscaffold_6G00409730
rosa_rugosa	Rorug02G0371000 Rorug07G0091500 Rorug07G0252000 Rorug07G0286400
rosa_wichuraiana	Rw5G037290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	469
AccI	GTMKAC	1 cut(s)	1521
AccII	CGCG	1 cut(s)	12
AccIII	TCCGGA	1 cut(s)	1563
AciI	CCGC	5 cut(s)	59, 65, 528, 662, 2157
AclI	AACGTT	1 cut(s)	591
AclWI	GGATC	3 cut(s)	519, 1820, 2082
AcoI	YGGCCR	4 cut(s)	69, 1386, 2000, 2122
AcsI	RAATTY	2 cut(s)	4, 1169
AcuI	CTGAAG	1 cut(s)	1242
AfaI	GTAC	8 cut(s)	236, 396, 977, 1268, 1277, 1508, 1529, 1671
AfeI	AGCGCT	1 cut(s)	2118
AfiI	CCNNNNNNNGG	4 cut(s)	1508, 1922, 2078, 2180
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	6 cut(s)	257, 603, 723, 1295, 1435, 2020
AjnI	CCWGG	1 cut(s)	2027
Alw21I	GWGCWC	1 cut(s)	957
Alw26I	GTCTC	2 cut(s)	1328, 1562
AlwI	GGATC	3 cut(s)	519, 1820, 2082
Ama87I	CYCGRG	3 cut(s)	644, 749, 1502
Aor13HI	TCCGGA	1 cut(s)	1563
Aor51HI	AGCGCT	1 cut(s)	2118
AoxI	GGCC	7 cut(s)	69, 136, 1386, 2000, 2013, 2122, 2182
ApoI	RAATTY	2 cut(s)	4, 1169
Asp700I	GAANNNNTTC	1 cut(s)	718
AspLEI	GCGC	1 cut(s)	2119
AspS9I	GGNCC	5 cut(s)	641, 1349, 1480, 1705, 1962
AsuC2I	CCSGG	1 cut(s)	1689
AsuHPI	GGTGA	4 cut(s)	690, 738, 1376, 2171
AsuNHI	GCTAGC	2 cut(s)	584, 2032
AvaI	CYCGRG	3 cut(s)	644, 749, 1502
AvaII	GGWCC	5 cut(s)	641, 1349, 1480, 1705, 1962
BaeGI	GKGCMC	1 cut(s)	472
BalI	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
BanI	GGYRCC	1 cut(s)	469
BanII	GRGCYC	2 cut(s)	851, 957
BbsI	GAAGAC	1 cut(s)	1230
Bbv12I	GWGCWC	1 cut(s)	957
BccI	CCATC	7 cut(s)	80, 415, 565, 911, 1142, 1653, 1768
BcgI	CGANNNNNNTGC	2 cut(s)	1070, 1104
BciT130I	CCWGG	1 cut(s)	2029
BciVI	GTATCC	1 cut(s)	328
BclI	TGATCA	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	1689
BcoDI	GTCTC	2 cut(s)	1328, 1562
BfaI	CTAG	5 cut(s)	585, 950, 1370, 1746, 2033
BfmI	CTRYAG	2 cut(s)	438, 1101
BfoI	RGCGCY	1 cut(s)	2120
BfuI	GTATCC	1 cut(s)	328
BglII	AGATCT	1 cut(s)	510
Bme1390I	CCNGG	2 cut(s)	1689, 2029
Bme18I	GGWCC	5 cut(s)	641, 1349, 1480, 1705, 1962
BmeT110I	CYCGRG	3 cut(s)	644, 749, 1502
BmgT120I	GGNCC	5 cut(s)	641, 1349, 1480, 1705, 1962
BmiI	GGNNCC	5 cut(s)	471, 643, 829, 1604, 1963
BmrFI	CCNGG	2 cut(s)	1689, 2029
BmsI	GCATC	3 cut(s)	667, 1399, 1603
BmtI	GCTAGC	2 cut(s)	588, 2036
BpiI	GAAGAC	1 cut(s)	1230
Bpu10I	CCTNAGC	1 cut(s)	2097
BpuEI	CTTGAG	6 cut(s)	350, 691, 941, 1310, 1401, 2239
BpuMI	CCSGG	1 cut(s)	1689
Bsa29I	ATCGAT	1 cut(s)	1824
BsaBI	GATNNNNATC	1 cut(s)	433
BsaJI	CCNNGG	3 cut(s)	456, 1080, 1589
BsaWI	WCCGGW	3 cut(s)	1563, 2071, 2195
Bsc4I	CCNNNNNNNGG	4 cut(s)	1508, 1922, 2078, 2180
Bse118I	RCCGGY	1 cut(s)	1844
Bse1I	ACTGG	2 cut(s)	2003, 2003
Bse3DI	GCAATG	4 cut(s)	149, 322, 539, 1098
Bse8I	GATNNNNATC	1 cut(s)	433
BseAI	TCCGGA	1 cut(s)	1563
BseBI	CCWGG	1 cut(s)	2029
BseCI	ATCGAT	1 cut(s)	1824
BseDI	CCNNGG	3 cut(s)	456, 1080, 1589
BseGI	GGATG	6 cut(s)	226, 658, 922, 1453, 1468, 2215
BseJI	GATNNNNATC	1 cut(s)	433
BseLI	CCNNNNNNNGG	4 cut(s)	1508, 1922, 2078, 2180
BseMI	GCAATG	4 cut(s)	149, 322, 539, 1098
BseMII	CTCAG	5 cut(s)	142, 207, 1329, 1796, 2088
BseNI	ACTGG	2 cut(s)	2003, 2003
BseRI	GAGGAG	2 cut(s)	952, 2024
BseSI	GKGCMC	1 cut(s)	472
BseYI	CCCAGC	3 cut(s)	623, 672, 1579
BsgI	GTGCAG	1 cut(s)	1215
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	7 cut(s)	71, 138, 1388, 2002, 2015, 2124, 2184
BshNI	GGYRCC	1 cut(s)	469
BshVI	ATCGAT	1 cut(s)	1824
BsiHKAI	GWGCWC	1 cut(s)	957
BsiHKCI	CYCGRG	3 cut(s)	644, 749, 1502
BsiSI	CCGG	5 cut(s)	1564, 1689, 1845, 2072, 2196
BslFI	GGGAC	4 cut(s)	983, 1485, 1739, 1975
BslI	CCNNNNNNNGG	4 cut(s)	1508, 1922, 2078, 2180
BsmAI	GTCTC	2 cut(s)	1328, 1562
BsmBI	CGTCTC	1 cut(s)	1562
BsmFI	GGGAC	4 cut(s)	983, 1485, 1739, 1975
BsmI	GAATGC	2 cut(s)	1423, 2143
BsnI	GGCC	7 cut(s)	71, 138, 1388, 2002, 2015, 2124, 2184
BsoBI	CYCGRG	3 cut(s)	644, 749, 1502
Bsp1286I	GDGCHC	3 cut(s)	472, 851, 957
Bsp13I	TCCGGA	1 cut(s)	1563
Bsp1407I	TGTACA	3 cut(s)	234, 975, 1669
Bsp143I	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
BspACI	CCGC	5 cut(s)	59, 65, 528, 662, 2157
BspANI	GGCC	7 cut(s)	71, 138, 1388, 2002, 2015, 2124, 2184
BspCNI	CTCAG	5 cut(s)	141, 208, 1328, 1795, 2089
BspDI	ATCGAT	1 cut(s)	1824
BspEI	TCCGGA	1 cut(s)	1563
BspFNI	CGCG	1 cut(s)	12
BspLI	GGNNCC	5 cut(s)	471, 643, 829, 1604, 1963
BspMAI	CTGCAG	1 cut(s)	1105
BspOI	GCTAGC	2 cut(s)	588, 2036
BspPI	GGATC	3 cut(s)	519, 1820, 2082
BspT107I	GGYRCC	1 cut(s)	469
BsrDI	GCAATG	4 cut(s)	149, 322, 539, 1098
BsrFI	RCCGGY	1 cut(s)	1844
BsrGI	TGTACA	3 cut(s)	234, 975, 1669
BsrI	ACTGG	2 cut(s)	2003, 2003
BssAI	RCCGGY	1 cut(s)	1844
BssECI	CCNNGG	3 cut(s)	456, 1080, 1589
BssMI	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
BssT1I	CCWWGG	1 cut(s)	1589
Bst2UI	CCWGG	1 cut(s)	2029
Bst4CI	ACNGT	8 cut(s)	115, 457, 479, 487, 1431, 1511, 1676, 2043
Bst6I	CTCTTC	6 cut(s)	41, 48, 1059, 1184, 1281, 1565
BstAPI	GCANNNNNTGC	1 cut(s)	1622
BstAUI	TGTACA	3 cut(s)	234, 975, 1669
BstC8I	GCNNGC	5 cut(s)	586, 988, 1655, 1850, 2034
BstDEI	CTNAG	8 cut(s)	128, 216, 1315, 1546, 1598, 1782, 2097, 2142
BstDSI	CCRYGG	1 cut(s)	456
BstF5I	GGATG	6 cut(s)	226, 658, 922, 1453, 1468, 2215
BstFNI	CGCG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	2120
BstHHI	GCGC	1 cut(s)	2119
BstKTI	GATC	7 cut(s)	121, 513, 527, 1555, 1828, 2077, 2230
BstMAI	GTCTC	2 cut(s)	1328, 1562
BstMBI	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
BstNI	CCWGG	1 cut(s)	2029
BstNSI	RCATGY	4 cut(s)	976, 1500, 1852, 1978
BstSCI	CCNGG	2 cut(s)	1687, 2027
BstSFI	CTRYAG	2 cut(s)	438, 1101
BstSLI	GKGCMC	1 cut(s)	472
BstUI	CGCG	1 cut(s)	12
BstV2I	GAAGAC	1 cut(s)	1230
BstX2I	RGATCY	2 cut(s)	510, 2074
BstXI	CCANNNNNNTGG	1 cut(s)	1126
BstYI	RGATCY	2 cut(s)	510, 2074
Bsu15I	ATCGAT	1 cut(s)	1824
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	7 cut(s)	71, 138, 1388, 2002, 2015, 2124, 2184
BsuTUI	ATCGAT	1 cut(s)	1824
BtgI	CCRYGG	1 cut(s)	456
BtsCI	GGATG	6 cut(s)	226, 658, 922, 1453, 1468, 2215
BtsIMutI	CAGTG	4 cut(s)	483, 792, 1178, 2048
Cac8I	GCNNGC	5 cut(s)	586, 988, 1655, 1850, 2034
CfoI	GCGC	1 cut(s)	2119
Cfr10I	RCCGGY	1 cut(s)	1844
Cfr13I	GGNCC	5 cut(s)	641, 1349, 1480, 1705, 1962
ClaI	ATCGAT	1 cut(s)	1824
Csp6I	GTAC	8 cut(s)	235, 395, 976, 1267, 1276, 1507, 1528, 1670
CspCI	CAANNNNNGTGG	2 cut(s)	438, 473
CviQI	GTAC	8 cut(s)	235, 395, 976, 1267, 1276, 1507, 1528, 1670
DdeI	CTNAG	8 cut(s)	128, 216, 1315, 1546, 1598, 1782, 2097, 2142
DpnI	GATC	7 cut(s)	120, 512, 526, 1554, 1827, 2076, 2229
DpnII	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
EaeI	YGGCCR	4 cut(s)	69, 1386, 2000, 2122
Eam1104I	CTCTTC	6 cut(s)	41, 48, 1059, 1184, 1281, 1565
EarI	CTCTTC	6 cut(s)	41, 48, 1059, 1184, 1281, 1565
EciI	GGCGGA	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	955
Eco130I	CCWWGG	1 cut(s)	1589
Eco147I	AGGCCT	1 cut(s)	2015
Eco24I	GRGCYC	2 cut(s)	851, 957
Eco47I	GGWCC	5 cut(s)	641, 1349, 1480, 1705, 1962
Eco47III	AGCGCT	1 cut(s)	2118
Eco53kI	GAGCTC	1 cut(s)	955
Eco57I	CTGAAG	1 cut(s)	1242
Eco88I	CYCGRG	3 cut(s)	644, 749, 1502
EcoICRI	GAGCTC	1 cut(s)	955
EcoO109I	RGGNCCY	2 cut(s)	641, 1962
EcoRI	GAATTC	2 cut(s)	4, 1169
EcoRII	CCWGG	1 cut(s)	2027
EcoT14I	CCWWGG	1 cut(s)	1589
EcoT38I	GRGCYC	2 cut(s)	851, 957
ErhI	CCWWGG	1 cut(s)	1589
Esp3I	CGTCTC	1 cut(s)	1562
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FaqI	GGGAC	4 cut(s)	983, 1485, 1739, 1975
FauNDI	CATATG	1 cut(s)	517
FbaI	TGATCA	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	1521
FokI	GGATG	6 cut(s)	233, 645, 929, 1455, 1460, 2222
FriOI	GRGCYC	2 cut(s)	851, 957
FspBI	CTAG	5 cut(s)	585, 950, 1370, 1746, 2033
GlaI	GCGC	1 cut(s)	2118
GsaI	CCCAGC	3 cut(s)	627, 676, 1583
HaeII	RGCGCY	1 cut(s)	2120
HaeIII	GGCC	7 cut(s)	71, 138, 1388, 2002, 2015, 2124, 2184
HapII	CCGG	5 cut(s)	1564, 1689, 1845, 2072, 2196
HhaI	GCGC	1 cut(s)	2119
Hin6I	GCGC	1 cut(s)	2117
HinP1I	GCGC	1 cut(s)	2117
HindIII	AAGCTT	1 cut(s)	717
HinfI	GANTC	7 cut(s)	27, 429, 599, 926, 1772, 1884, 2260
HpaII	CCGG	5 cut(s)	1564, 1689, 1845, 2072, 2196
HphI	GGTGA	4 cut(s)	690, 738, 1376, 2171
Hpy166II	GTNNAC	6 cut(s)	235, 1030, 1278, 1367, 1522, 1672
Hpy188I	TCNGA	8 cut(s)	32, 217, 428, 598, 931, 1607, 1650, 1867
Hpy188III	TCNNGA	8 cut(s)	195, 708, 825, 1327, 1406, 1502, 1564, 1829
Hpy8I	GTNNAC	6 cut(s)	235, 1030, 1278, 1367, 1522, 1672
HpyAV	CCTTC	7 cut(s)	777, 1102, 1228, 1238, 1331, 1496, 2077
HpyCH4III	ACNGT	8 cut(s)	115, 457, 479, 487, 1431, 1511, 1676, 2043
HpyCH4IV	ACGT	4 cut(s)	366, 444, 591, 1402
HpyF3I	CTNAG	8 cut(s)	128, 216, 1315, 1546, 1598, 1782, 2097, 2142
HpySE526I	ACGT	4 cut(s)	366, 444, 591, 1402
HspAI	GCGC	1 cut(s)	2117
Kpn2I	TCCGGA	1 cut(s)	1563
Ksp22I	TGATCA	1 cut(s)	118
Kzo9I	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
LmnI	GCTCC	2 cut(s)	559, 1493
LweI	GCATC	3 cut(s)	667, 1399, 1603
MaeI	CTAG	5 cut(s)	585, 950, 1370, 1746, 2033
MaeII	ACGT	4 cut(s)	366, 444, 591, 1402
MaeIII	GTNAC	5 cut(s)	696, 776, 1676, 1777, 2219
MalI	GATC	7 cut(s)	120, 512, 526, 1554, 1827, 2076, 2229
MboI	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
MflI	RGATCY	2 cut(s)	510, 2074
MhlI	GDGCHC	3 cut(s)	472, 851, 957
MlsI	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
MluCI	AATT	8 cut(s)	4, 310, 1073, 1169, 1608, 1620, 2201, 2237
MluNI	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
MlyI	GAGTC	3 cut(s)	1766, 1893, 2269
MmeI	TCCRAC	1 cut(s)	473
Mox20I	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
MroI	TCCGGA	1 cut(s)	1563
MroXI	GAANNNNTTC	1 cut(s)	718
MscI	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
MseI	TTAA	6 cut(s)	162, 1212, 1683, 1992, 2103, 2281
MslI	CAYNNNNRTG	2 cut(s)	842, 1713
Msp20I	TGGCCA	4 cut(s)	71, 1388, 2002, 2124
MspA1I	CMGCKG	1 cut(s)	1100
MspI	CCGG	5 cut(s)	1564, 1689, 1845, 2072, 2196
MspR9I	CCNGG	2 cut(s)	1689, 2029
Mva1269I	GAATGC	2 cut(s)	1423, 2143
MvaI	CCWGG	1 cut(s)	2029
MvnI	CGCG	1 cut(s)	12
NciI	CCSGG	1 cut(s)	1689
NdeI	CATATG	1 cut(s)	517
NdeII	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
NheI	GCTAGC	2 cut(s)	584, 2032
NlaIV	GGNNCC	5 cut(s)	471, 643, 829, 1604, 1963
NmeAIII	GCCGAG	1 cut(s)	1105
NmuCI	GTSAC	4 cut(s)	696, 1676, 1777, 2219
NspI	RCATGY	4 cut(s)	976, 1500, 1852, 1978
PaeI	GCATGC	1 cut(s)	1852
PceI	AGGCCT	1 cut(s)	2015
PciI	ACATGT	1 cut(s)	972
PctI	GAATGC	2 cut(s)	1423, 2143
PdmI	GAANNNNTTC	1 cut(s)	718
PfeI	GAWTC	4 cut(s)	27, 429, 599, 926
PflFI	GACNNNGTC	1 cut(s)	1775
PleI	GAGTC	3 cut(s)	1766, 1892, 2268
PpsI	GAGTC	3 cut(s)	1766, 1892, 2268
PpuMI	RGGWCCY	2 cut(s)	641, 1962
PscI	ACATGT	1 cut(s)	972
Psp124BI	GAGCTC	1 cut(s)	957
Psp1406I	AACGTT	1 cut(s)	591
Psp5II	RGGWCCY	2 cut(s)	641, 1962
Psp6I	CCWGG	1 cut(s)	2027
PspFI	CCCAGC	3 cut(s)	623, 672, 1579
PspGI	CCWGG	1 cut(s)	2027
PspN4I	GGNNCC	5 cut(s)	471, 643, 829, 1604, 1963
PspPI	GGNCC	5 cut(s)	641, 1349, 1480, 1705, 1962
PspPPI	RGGWCCY	2 cut(s)	641, 1962
PsrI	GAACNNNNNNTAC	2 cut(s)	1653, 1685
PstI	CTGCAG	1 cut(s)	1105
PsuI	RGATCY	2 cut(s)	510, 2074
PsyI	GACNNNGTC	1 cut(s)	1775
PvuII	CAGCTG	1 cut(s)	1100
RsaI	GTAC	8 cut(s)	236, 396, 977, 1268, 1277, 1508, 1529, 1671
RsaNI	GTAC	8 cut(s)	235, 395, 976, 1267, 1276, 1507, 1528, 1670
RseI	CAYNNNNRTG	2 cut(s)	842, 1713
SacI	GAGCTC	1 cut(s)	957
SaqAI	TTAA	6 cut(s)	162, 1212, 1683, 1992, 2103, 2281
Sau3AI	GATC	7 cut(s)	118, 510, 524, 1552, 1825, 2074, 2227
Sau96I	GGNCC	5 cut(s)	641, 1349, 1480, 1705, 1962
SchI	GAGTC	3 cut(s)	1766, 1893, 2269
ScrFI	CCNGG	2 cut(s)	1689, 2029
SduI	GDGCHC	3 cut(s)	472, 851, 957
SfaNI	GCATC	3 cut(s)	667, 1399, 1603
SfcI	CTRYAG	2 cut(s)	438, 1101
SinI	GGWCC	5 cut(s)	641, 1349, 1480, 1705, 1962
SmiMI	CAYNNNNRTG	2 cut(s)	842, 1713
SmlI	CTYRAG	6 cut(s)	329, 706, 956, 1325, 1416, 2254
SmoI	CTYRAG	6 cut(s)	329, 706, 956, 1325, 1416, 2254
SphI	GCATGC	1 cut(s)	1852
Sse9I	AATT	8 cut(s)	4, 310, 1073, 1169, 1608, 1620, 2201, 2237
SseBI	AGGCCT	1 cut(s)	2015
SsiI	CCGC	5 cut(s)	59, 65, 528, 662, 2157
SspI	AATATT	1 cut(s)	1696
SspMI	CTAG	5 cut(s)	585, 950, 1370, 1746, 2033
SstI	GAGCTC	1 cut(s)	957
StuI	AGGCCT	1 cut(s)	2015
StyD4I	CCNGG	2 cut(s)	1687, 2027
StyI	CCWWGG	1 cut(s)	1589
TaaI	ACNGT	8 cut(s)	115, 457, 479, 487, 1431, 1511, 1676, 2043
TaiI	ACGT	4 cut(s)	369, 447, 594, 1405
TaqI	TCGA	6 cut(s)	75, 560, 1137, 1173, 1284, 1824
TasI	AATT	8 cut(s)	4, 310, 1073, 1169, 1608, 1620, 2201, 2237
TatI	WGTACW	5 cut(s)	234, 975, 1275, 1527, 1669
TfiI	GAWTC	4 cut(s)	27, 429, 599, 926
Tru1I	TTAA	6 cut(s)	162, 1212, 1683, 1992, 2103, 2281
Tru9I	TTAA	6 cut(s)	162, 1212, 1683, 1992, 2103, 2281
TscAI	CASTG	4 cut(s)	490, 799, 1185, 2048
TseFI	GTSAC	4 cut(s)	696, 1676, 1777, 2219
Tsp45I	GTSAC	4 cut(s)	696, 1676, 1777, 2219
TspDTI	ATGAA	8 cut(s)	17, 146, 333, 421, 740, 826, 1217, 2150
TspGWI	ACGGA	2 cut(s)	272, 795
TspRI	CASTG	4 cut(s)	490, 799, 1185, 2048
Tth111I	GACNNNGTC	1 cut(s)	1775
VpaK11BI	GGWCC	5 cut(s)	641, 1349, 1480, 1705, 1962
XapI	RAATTY	2 cut(s)	4, 1169
XceI	RCATGY	4 cut(s)	976, 1500, 1852, 1978
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1587, 1918
XmiI	GTMKAC	1 cut(s)	1521
XmnI	GAANNNNTTC	1 cut(s)	718
XspI	CTAG	5 cut(s)	585, 950, 1370, 1746, 2033

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.