Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009161

Physical Location & Seq

Genomic Coordinates Reverse (-)

16873869 .. 16876083

Gene Structure 2215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G45900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGCGAAACCTGAAGAAGAAGAAGAGAGATTGAGAATGAGAAGCTTCGTTGAGGAAGAAAAAGAGCATGATGAATTGAAGAAACTAGCAAAATCATTTCTAGTTTTAAGCTTCTCAGTAATGTTAGCTCATCTCCCAAACGACGCAATCTCTCTTGTCCCGAGATTAACATCTCAAGTCACCGAGCTAAAACGGCGACTCGCGACGGCGGAGGAACAAGTCCGTCAGATGAAATCTCGGCGCGTGGAAGATTCGAAAGCTAACGCGCGTGTGGTCGAGATCTTTGCTAGTCATAGAAACGCTTGGCAAGAAGAAGAGAAACGATTGTTGAATCGGATTCATGAAATTGAAGAAGAAAGAGAAGATTTCATGAATAGGATTAGTGAATTGGAGAGGGAAGTGAGTGAGAGAGATGAAATGATTGGGTTTATGTCTCGAAGAGAGATTGAGGAAGAAGATGATGATGATGGACAAGGAGATGAGTCCAGTGAACGTTATGCTGTGGATCATCTCACTCTATCTTCATCACCATCACCTAATGCTTATGGCAATTTTAATCCTTTCCAGGATTTACAATATGAATCTTTGGAATCTGTGTATCGTATGAAGCATTTTGTGCCAAGAAGGGAATCACCATGGAAGATTGATAGTGAAGGGACGGGTGTATCTGCGAAACTGAGGTTGCTTGAAGAGGAATTACTGAATCTTGAGAAAGTTTGTCGTCCTAGTGACATATCGAAAGTTCCGTCTTTGTTGAAAAAACAGGCTAAGAGGTATCAAGCTCTTTCAGGGAAGATCGATGATCTATGTAGAAGAATGCAGAGTAGTGATCCGTGCGATGCTACATTAGGACCTGAGTTCAGGACGCAAAGACAAAACGAGTTTCTGCTCGAGTGTTTCAGACTTCAGCAACGGGCATCGGAGACAGGGCAGAAGCTAGTTTCATTGCAGACGGAAATCACCAGGAGTAATCAAGGAGATCAGTTAAGCCAAGCCAAGATGAACACAGGGAGGTCATTGGATTTGATCAAGAACAACTTGAAAGAAGTTCAGAGAAACTTGGAGATTTGGCTGGCTAGAATTATTGGAGATCTTGAAGGTATACTTGCTAGAGACGGGGCTTCACGTGTAAGAGAATTCTACGTTGCTCGATACCCTTTTGTTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

389

Amino Acids

45.34

Weight (kDa)

5.39

Isoelectric Point (pI)

67.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45900
fragaria_vesca	FvH4_5g24100 FvH4_5g24100
malus_domestica	MD00G1002200.v1.1 MD06G1017100.v1.1
prunus_persica	Prupe.5G019400_v2.0.a1 Prupe.5G019400_v2.0.a1
pyrus_communis	pycom06g01380 pycom16g25530
rosa_chinensis	RchiOBHm_Chr7g0213631
rosa_laevigata	RLG00000002795
rosa_multiflora	Rmu_co8487661.1_g000001 Rmu_sc0008101.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245730
rosa_rugosa	Rorug07G0143500 Rorug07G0143600
rosa_samantha	Rh7AG276600 Rh7BG270800 Rh7CG295600 Rh7DG282800
rosa_wichuraiana	Rw0G023510 Rw7G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1102
AccII	CGCG	4 cut(s)	203, 243, 266, 268
AciI	CCGC	1 cut(s)	209
AclI	AACGTT	1 cut(s)	493
AclWI	GGATC	2 cut(s)	513, 824
AcsI	RAATTY	1 cut(s)	1136
AcuI	CTGAAG	2 cut(s)	33, 890
AcvI	CACGTG	1 cut(s)	1127
AflIII	ACRYGT	1 cut(s)	1126
AgsI	TTSAA	7 cut(s)	79, 331, 350, 689, 757, 1042, 1097
AjnI	CCWGG	2 cut(s)	564, 962
AluBI	AGCT	7 cut(s)	45, 111, 128, 187, 260, 782, 937
AluI	AGCT	7 cut(s)	45, 111, 128, 187, 260, 782, 937
Alw26I	GTCTC	3 cut(s)	438, 917, 1107
AlwI	GGATC	2 cut(s)	513, 824
Ama87I	CYCGRG	2 cut(s)	160, 890
ApoI	RAATTY	1 cut(s)	1136
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AspLEI	GCGC	2 cut(s)	243, 268
AspS9I	GGNCC	1 cut(s)	851
AsuHPI	GGTGA	5 cut(s)	172, 519, 525, 624, 952
AsuII	TTCGAA	1 cut(s)	254
AvaI	CYCGRG	2 cut(s)	160, 890
AvaII	GGWCC	1 cut(s)	851
BaeI	ACNNNNGTAYC	2 cut(s)	648, 681
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
BbrPI	CACGTG	1 cut(s)	1127
BccI	CCATC	2 cut(s)	461, 538
BceAI	ACGGC	2 cut(s)	209, 222
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	2 cut(s)	566, 964
BclI	TGATCA	1 cut(s)	1026
BcoDI	GTCTC	3 cut(s)	438, 917, 1107
BfaI	CTAG	7 cut(s)	86, 101, 288, 726, 938, 1077, 1110
BglII	AGATCT	2 cut(s)	279, 1090
Bme1390I	CCNGG	2 cut(s)	566, 964
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	2 cut(s)	160, 890
BmgT120I	GGNCC	1 cut(s)	851
BmrFI	CCNGG	2 cut(s)	566, 964
BmsI	GCATC	2 cut(s)	829, 926
Bpu14I	TTCGAA	1 cut(s)	254
BpuEI	CTTGAG	2 cut(s)	159, 728
Bsa29I	ATCGAT	1 cut(s)	798
BsaAI	YACGTR	1 cut(s)	1127
BsaBI	GATNNNNATC	1 cut(s)	169
BsaJI	CCNNGG	1 cut(s)	635
Bse1I	ACTGG	1 cut(s)	486
Bse3DI	GCAATG	1 cut(s)	944
Bse8I	GATNNNNATC	1 cut(s)	169
BseBI	CCWGG	2 cut(s)	566, 964
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	1 cut(s)	635
BseJI	GATNNNNATC	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	944
BseMII	CTCAG	3 cut(s)	129, 668, 846
BseNI	ACTGG	1 cut(s)	486
Bsh1236I	CGCG	4 cut(s)	203, 243, 266, 268
BshVI	ATCGAT	1 cut(s)	798
BsiHKCI	CYCGRG	2 cut(s)	160, 890
BslFI	GGGAC	2 cut(s)	143, 670
BsmAI	GTCTC	3 cut(s)	438, 917, 1107
BsmBI	CGTCTC	1 cut(s)	1107
BsmFI	GGGAC	2 cut(s)	143, 670
BsmI	GAATGC	1 cut(s)	822
BsoBI	CYCGRG	2 cut(s)	160, 890
Bsp119I	TTCGAA	1 cut(s)	254
Bsp143I	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
Bsp19I	CCATGG	1 cut(s)	635
Bsp68I	TCGCGA	1 cut(s)	203
BspACI	CCGC	1 cut(s)	209
BspCNI	CTCAG	3 cut(s)	128, 669, 847
BspDI	ATCGAT	1 cut(s)	798
BspFNI	CGCG	4 cut(s)	203, 243, 266, 268
BspHI	TCATGA	2 cut(s)	340, 369
BspPI	GGATC	2 cut(s)	513, 824
BspT104I	TTCGAA	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	944
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	1 cut(s)	635
BssMI	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
BssNAI	GTATAC	1 cut(s)	1103
BssT1I	CCWWGG	1 cut(s)	635
Bst1107I	GTATAC	1 cut(s)	1103
Bst2UI	CCWGG	2 cut(s)	566, 964
Bst6I	CTCTTC	4 cut(s)	18, 309, 433, 684
BstAPI	GCANNNNNTGC	1 cut(s)	616
BstBAI	YACGTR	1 cut(s)	1127
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	1074
BstDEI	CTNAG	4 cut(s)	115, 677, 768, 855
BstDSI	CCRYGG	1 cut(s)	635
BstFNI	CGCG	4 cut(s)	203, 243, 266, 268
BstHHI	GCGC	2 cut(s)	243, 268
BstKTI	GATC	8 cut(s)	282, 508, 798, 805, 832, 982, 1029, 1093
BstMAI	GTCTC	3 cut(s)	438, 917, 1107
BstMBI	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	193, 616
BstNI	CCWGG	2 cut(s)	566, 964
BstSCI	CCNGG	2 cut(s)	564, 962
BstUI	CGCG	4 cut(s)	203, 243, 266, 268
BstX2I	RGATCY	2 cut(s)	279, 1090
BstYI	RGATCY	2 cut(s)	279, 1090
BstZ17I	GTATAC	1 cut(s)	1103
Bsu15I	ATCGAT	1 cut(s)	798
BsuTUI	ATCGAT	1 cut(s)	798
BtgI	CCRYGG	1 cut(s)	635
BtgZI	GCGATG	1 cut(s)	852
BtsIMutI	CAGTG	1 cut(s)	493
BtuMI	TCGCGA	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	1074
CciI	TCATGA	2 cut(s)	340, 369
CfoI	GCGC	2 cut(s)	243, 268
Cfr13I	GGNCC	1 cut(s)	851
ClaI	ATCGAT	1 cut(s)	798
CseI	GACGC	2 cut(s)	152, 874
CviAII	CATG	4 cut(s)	68, 341, 370, 636
DdeI	CTNAG	4 cut(s)	115, 677, 768, 855
DpnI	GATC	8 cut(s)	281, 507, 797, 804, 831, 981, 1028, 1092
DpnII	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
Eam1104I	CTCTTC	4 cut(s)	18, 309, 433, 684
EarI	CTCTTC	4 cut(s)	18, 309, 433, 684
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	635
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	33, 890
Eco72I	CACGTG	1 cut(s)	1127
Eco88I	CYCGRG	2 cut(s)	160, 890
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRI	GAATTC	1 cut(s)	1136
EcoRII	CCWGG	2 cut(s)	564, 962
EcoT14I	CCWWGG	1 cut(s)	635
ErhI	CCWWGG	1 cut(s)	635
Esp3I	CGTCTC	1 cut(s)	1107
FaeI	CATG	4 cut(s)	71, 344, 373, 639
FalI	AAGNNNNNCTT	4 cut(s)	1022, 1054, 1089, 1121
FaqI	GGGAC	2 cut(s)	143, 670
FatI	CATG	4 cut(s)	67, 340, 369, 635
FbaI	TGATCA	1 cut(s)	1026
FblI	GTMKAC	1 cut(s)	1102
FspBI	CTAG	7 cut(s)	86, 101, 288, 726, 938, 1077, 1110
GlaI	GCGC	2 cut(s)	242, 267
HgaI	GACGC	2 cut(s)	152, 874
HhaI	GCGC	2 cut(s)	243, 268
Hin1II	CATG	4 cut(s)	71, 344, 373, 639
Hin6I	GCGC	2 cut(s)	241, 266
HinP1I	GCGC	2 cut(s)	241, 266
HindIII	AAGCTT	2 cut(s)	43, 109
HinfI	GANTC	9 cut(s)	198, 251, 331, 337, 482, 581, 590, 629, 703
HphI	GGTGA	5 cut(s)	172, 519, 525, 624, 952
Hpy166II	GTNNAC	2 cut(s)	491, 1103
Hpy188I	TCNGA	5 cut(s)	228, 336, 902, 922, 1053
Hpy8I	GTNNAC	2 cut(s)	491, 1103
Hpy99I	CGWCG	2 cut(s)	146, 208
HpyAV	CCTTC	3 cut(s)	618, 647, 1091
HpyCH4IV	ACGT	3 cut(s)	493, 1126, 1143
HpyCH4V	TGCA	2 cut(s)	820, 949
HpyF10VI	GCNNNNNNNGC	2 cut(s)	193, 616
HpyF3I	CTNAG	4 cut(s)	115, 677, 768, 855
HpySE526I	ACGT	3 cut(s)	493, 1126, 1143
Hsp92II	CATG	4 cut(s)	71, 344, 373, 639
HspAI	GCGC	2 cut(s)	241, 266
Ksp22I	TGATCA	1 cut(s)	1026
Kzo9I	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
LweI	GCATC	2 cut(s)	829, 926
MaeI	CTAG	7 cut(s)	86, 101, 288, 726, 938, 1077, 1110
MaeII	ACGT	3 cut(s)	493, 1126, 1143
MaeIII	GTNAC	2 cut(s)	178, 728
MalI	GATC	8 cut(s)	281, 507, 797, 804, 831, 981, 1028, 1092
MboI	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
MflI	RGATCY	2 cut(s)	279, 1090
MluCI	AATT	7 cut(s)	74, 345, 386, 550, 695, 1080, 1136
MlyI	GAGTC	2 cut(s)	192, 491
MnlI	CCTC	8 cut(s)	46, 205, 387, 442, 672, 685, 765, 1005
MseI	TTAA	4 cut(s)	107, 167, 555, 986
MspR9I	CCNGG	2 cut(s)	566, 964
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	566, 964
MvnI	CGCG	4 cut(s)	203, 243, 266, 268
MwoI	GCNNNNNNNGC	2 cut(s)	193, 616
NcoI	CCATGG	1 cut(s)	635
NdeII	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
NlaIII	CATG	4 cut(s)	71, 344, 373, 639
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	2 cut(s)	178, 728
NruI	TCGCGA	1 cut(s)	203
NspV	TTCGAA	1 cut(s)	254
PaeR7I	CTCGAG	1 cut(s)	890
PagI	TCATGA	2 cut(s)	340, 369
PcsI	WCGNNNNNNNCGW	1 cut(s)	743
PctI	GAATGC	1 cut(s)	822
PfeI	GAWTC	7 cut(s)	251, 331, 337, 581, 590, 629, 703
PfoI	TCCNGGA	1 cut(s)	564
PleI	GAGTC	2 cut(s)	192, 490
PmaCI	CACGTG	1 cut(s)	1127
PmlI	CACGTG	1 cut(s)	1127
PpsI	GAGTC	2 cut(s)	192, 490
Ppu21I	YACGTR	1 cut(s)	1127
PpuMI	RGGWCCY	1 cut(s)	851
Psp1406I	AACGTT	1 cut(s)	493
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	2 cut(s)	564, 962
PspCI	CACGTG	1 cut(s)	1127
PspGI	CCWGG	2 cut(s)	564, 962
PspPI	GGNCC	1 cut(s)	851
PspPPI	RGGWCCY	1 cut(s)	851
PspXI	VCTCGAGB	1 cut(s)	890
PsuI	RGATCY	2 cut(s)	279, 1090
RruI	TCGCGA	1 cut(s)	203
SaqAI	TTAA	4 cut(s)	107, 167, 555, 986
Sau3AI	GATC	8 cut(s)	279, 505, 795, 802, 829, 979, 1026, 1090
Sau96I	GGNCC	1 cut(s)	851
SchI	GAGTC	2 cut(s)	192, 491
ScrFI	CCNGG	2 cut(s)	566, 964
SfaNI	GCATC	2 cut(s)	829, 926
Sfr274I	CTCGAG	1 cut(s)	890
SfuI	TTCGAA	1 cut(s)	254
SinI	GGWCC	1 cut(s)	851
SlaI	CTCGAG	1 cut(s)	890
SmlI	CTYRAG	3 cut(s)	174, 707, 890
SmoI	CTYRAG	3 cut(s)	174, 707, 890
Sse9I	AATT	7 cut(s)	74, 345, 386, 550, 695, 1080, 1136
SsiI	CCGC	1 cut(s)	209
SspMI	CTAG	7 cut(s)	86, 101, 288, 726, 938, 1077, 1110
StyD4I	CCNGG	2 cut(s)	564, 962
StyI	CCWWGG	1 cut(s)	635
TaiI	ACGT	3 cut(s)	496, 1129, 1146
TaqI	TCGA	7 cut(s)	254, 276, 436, 737, 798, 891, 1150
TasI	AATT	7 cut(s)	74, 345, 386, 550, 695, 1080, 1136
TfiI	GAWTC	7 cut(s)	251, 331, 337, 581, 590, 629, 703
Tru1I	TTAA	4 cut(s)	107, 167, 555, 986
Tru9I	TTAA	4 cut(s)	107, 167, 555, 986
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	2 cut(s)	178, 728
Tsp45I	GTSAC	2 cut(s)	178, 728
TspGWI	ACGGA	4 cut(s)	212, 735, 822, 968
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	851
XapI	RAATTY	1 cut(s)	1136
XhoI	CTCGAG	1 cut(s)	890
XmiI	GTMKAC	1 cut(s)	1102
XspI	CTAG	7 cut(s)	86, 101, 288, 726, 938, 1077, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.