Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01086

Orthogroup ID

OG0009161

Physical Location & Seq

Genomic Coordinates Reverse (-)

28396 .. 31366

Gene Structure 2971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G023510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCTCAGAGCCAAGTATCAGAAGCCGACGCAGAAGAGCTAAAGAAGCTCATGTGCTCCTACCTCGGCCTGAGCCTGAGCATGTTCCTAGCCCTAGCCCCCCACAAGTTCCAGGAGCTACAGCTCCAAGCCCGCGAGCTCTCCAAGCGGCTCTGGCAGGCGGAAGAGCAGGTCAGGCAGATGAGATCGAGGAGAAAAGAAGACTCCAAGGCCAACGCCCGGGTGGTGGAGATCTTCGCCAGCCACCGGAACTCGTGGCAGGCCGAGGAGAAGCGGCTGCTGAGCCAGATCGACGCGGCGGAGCGAGAAATGGCGAGCCTGAATGCGAGGGTCGAGGAGTTGGAGAAGAGCCGGGACGATTCGGAGTCGAGGATTTGTGAATTGGAGAGGGAGGTCGGGGAGAGGGATGATATGATTGGGTTTATGGCGACTAGAGGAGGCGACGCGGAGCAGCAGGGACAGTGTCAGCAGGTCAAGGATGTCAGTGTGTATGACAATAATGCCTATGCGTTTGGGTTTGACTCCGAATTGGTGGCCGAGGCTTCCAAGCTCTGGCAGGATGTACAGTATGAATCCCTTGAGCCATTGTATCATACGAAGCATTTTGTGCCAAGGGAGTCCCCATGGAAGGTTGATGGTGAATCGACTGTAGTATCCTCTAAACTTAAATTACTTGAACAGGAACTACTGAATTTGGAAAATATTGGAAAGGGTGATCTTTCTAAAGTACCTTCATTAATGAGGAAGCAGACAAAGAGGTATCAAGCTCTTGCGGGGAAGATAGATGATCTATGCCGAAGAATGCAGGCTAGTGATCCTTGTGAAGCCACAGTAAGTCCTGAGTTTCGTACGCAAAGACAAACAGAATTTTTACTCGAATCATTTAGACTTCAGCAACGTGCATCAGACACTGCACAGAAGCTGATGGCAGTGCAAACTGAGATCGGGAAAAGTTATTATGGGGATGAGCTGGGAAACCAGGCCAAACTTACGATGAGACGGTCTTTGGAGATATGGTTGGCCAGAATTACTGGAGATCTTGAGGGAATTCTTGCCAGAGACGGTGCTTCTCGTGTAAGGGAATATTATGTAGCTAGATATCCGTTTGTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

42.63

Weight (kDa)

5.5

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45900
fragaria_vesca	FvH4_5g24100 FvH4_5g24100
malus_domestica	MD00G1002200.v1.1 MD06G1017100.v1.1
prunus_persica	Prupe.5G019400_v2.0.a1 Prupe.5G019400_v2.0.a1
pyrus_communis	pycom06g01380 pycom16g25530
rosa_chinensis	RchiOBHm_Chr7g0213631
rosa_laevigata	RLG00000002795
rosa_multiflora	Rmu_co8487661.1_g000001 Rmu_sc0008101.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245730
rosa_rugosa	Rorug07G0143500 Rorug07G0143600
rosa_samantha	Rh7AG276600 Rh7BG270800 Rh7CG295600 Rh7DG282800
rosa_wichuraiana	Rw0G023510 Rw7G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	160, 460
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	3 cut(s)	135, 296, 446
AciI	CCGC	8 cut(s)	133, 148, 161, 274, 296, 299, 446, 773
AclWI	GGATC	1 cut(s)	809
AcoI	YGGCCR	2 cut(s)	534, 1020
AcsI	RAATTY	3 cut(s)	691, 866, 1047
AcuI	CTGAAG	1 cut(s)	875
AfaI	GTAC	3 cut(s)	564, 729, 850
AfiI	CCNNNNNNNGG	5 cut(s)	219, 226, 246, 552, 628
AgsI	TTSAA	2 cut(s)	677, 1112
AjnI	CCWGG	2 cut(s)	111, 978
Alw21I	GWGCWC	2 cut(s)	59, 141
Alw26I	GTCTC	2 cut(s)	991, 1053
AlwI	GGATC	1 cut(s)	809
AlwNI	CAGNNNCTG	2 cut(s)	911, 922
Ama87I	CYCGRG	1 cut(s)	219
AoxI	GGCC	6 cut(s)	67, 210, 261, 534, 981, 1020
ApeKI	GCWGC	2 cut(s)	277, 451
ApoI	RAATTY	3 cut(s)	691, 866, 1047
AseI	ATTAAT	1 cut(s)	737
AsuC2I	CCSGG	3 cut(s)	220, 221, 353
AsuHPI	GGTGA	2 cut(s)	650, 725
AvaI	CYCGRG	1 cut(s)	219
BaeI	ACNNNNGTAYC	2 cut(s)	636, 669
BalI	TGGCCA	1 cut(s)	1022
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	2 cut(s)	253, 1071
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	59, 141
BbvI	GCAGC	2 cut(s)	264, 463
BccI	CCATC	2 cut(s)	629, 919
BciT130I	CCWGG	2 cut(s)	113, 980
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	3 cut(s)	220, 221, 353
BcoDI	GTCTC	2 cut(s)	991, 1053
BfaI	CTAG	5 cut(s)	89, 95, 432, 810, 1095
BfmI	CTRYAG	2 cut(s)	119, 648
BfuAI	ACCTGC	2 cut(s)	160, 460
BfuI	GTATCC	1 cut(s)	664
BglII	AGATCT	2 cut(s)	231, 1036
BisI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	5 cut(s)	150, 276, 279, 298, 453
Bme1390I	CCNGG	5 cut(s)	113, 220, 221, 353, 980
BmeT110I	CYCGRG	1 cut(s)	219
BmrFI	CCNGG	5 cut(s)	113, 220, 221, 353, 980
BmsI	GCATC	1 cut(s)	911
BpiI	GAAGAC	1 cut(s)	207
BpmI	CTGGAG	1 cut(s)	1053
Bpu10I	CCTNAGC	2 cut(s)	71, 77
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	2 cut(s)	599, 1061
BpuMI	CCSGG	3 cut(s)	220, 221, 353
BsaJI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	1001, 1031
Bsc4I	CCNNNNNNNGG	5 cut(s)	219, 226, 246, 552, 628
Bse1I	ACTGG	1 cut(s)	1036
BseBI	CCWGG	2 cut(s)	113, 980
BseDI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
BseGI	GGATG	4 cut(s)	412, 484, 565, 970
BseLI	CCNNNNNNNGG	5 cut(s)	219, 226, 246, 552, 628
BseMII	CTCAG	6 cut(s)	20, 62, 68, 272, 831, 930
BseNI	ACTGG	1 cut(s)	1036
BseRI	GAGGAG	4 cut(s)	205, 281, 350, 450
BseXI	GCAGC	2 cut(s)	264, 463
BseYI	CCCAGC	1 cut(s)	970
BsgI	GTGCAG	1 cut(s)	897
Bsh1236I	CGCG	3 cut(s)	135, 296, 446
BshFI	GGCC	6 cut(s)	69, 212, 263, 536, 983, 1022
BsiHKAI	GWGCWC	2 cut(s)	59, 141
BsiHKCI	CYCGRG	1 cut(s)	219
BsiSI	CCGG	3 cut(s)	220, 247, 352
BsiWI	CGTACG	1 cut(s)	848
BslFI	GGGAC	3 cut(s)	368, 471, 604
BslI	CCNNNNNNNGG	5 cut(s)	219, 226, 246, 552, 628
BsmAI	GTCTC	2 cut(s)	991, 1053
BsmBI	CGTCTC	2 cut(s)	991, 1053
BsmFI	GGGAC	3 cut(s)	368, 471, 604
BsmI	GAATGC	2 cut(s)	328, 807
BsnI	GGCC	6 cut(s)	69, 212, 263, 536, 983, 1022
BsoBI	CYCGRG	1 cut(s)	219
Bsp1286I	GDGCHC	2 cut(s)	59, 141
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	8 cut(s)	133, 148, 161, 274, 296, 299, 446, 773
BspANI	GGCC	6 cut(s)	69, 212, 263, 536, 983, 1022
BspCNI	CTCAG	6 cut(s)	19, 63, 69, 273, 832, 931
BspFNI	CGCG	3 cut(s)	135, 296, 446
BspMI	ACCTGC	2 cut(s)	160, 460
BspPI	GGATC	1 cut(s)	809
BspQI	GCTCTTC	3 cut(s)	30, 159, 341
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	1036
BssECI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
BssMI	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
BssSI	CACGAG	2 cut(s)	253, 1071
BssT1I	CCWWGG	3 cut(s)	207, 611, 623
Bst2BI	CACGAG	2 cut(s)	253, 1071
Bst2UI	CCWGG	2 cut(s)	113, 980
Bst4CI	ACNGT	6 cut(s)	462, 567, 649, 832, 1002, 1064
Bst6I	CTCTTC	3 cut(s)	30, 159, 341
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	7 cut(s)	133, 137, 159, 241, 261, 316, 807
BstDEI	CTNAG	6 cut(s)	6, 71, 77, 281, 840, 939
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	4 cut(s)	412, 484, 565, 970
BstFNI	CGCG	3 cut(s)	135, 296, 446
BstKTI	GATC	8 cut(s)	188, 234, 291, 718, 790, 817, 945, 1039
BstMAI	GTCTC	2 cut(s)	991, 1053
BstMBI	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
BstNI	CCWGG	2 cut(s)	113, 980
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	5 cut(s)	111, 218, 219, 351, 978
BstSFI	CTRYAG	2 cut(s)	119, 648
BstUI	CGCG	3 cut(s)	135, 296, 446
BstV1I	GCAGC	2 cut(s)	264, 463
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	231, 1036
BstYI	RGATCY	2 cut(s)	231, 1036
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	6 cut(s)	69, 212, 263, 536, 983, 1022
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	4 cut(s)	412, 484, 565, 970
BtsI	GCAGTG	2 cut(s)	909, 936
BtsIMutI	CAGTG	4 cut(s)	467, 490, 909, 936
BveI	ACCTGC	2 cut(s)	160, 460
Cac8I	GCNNGC	7 cut(s)	133, 137, 159, 241, 261, 316, 807
CaiI	CAGNNNCTG	2 cut(s)	911, 922
Cfr9I	CCCGGG	1 cut(s)	219
CseI	GACGC	3 cut(s)	38, 302, 452
Csp6I	GTAC	3 cut(s)	563, 728, 849
CviAII	CATG	3 cut(s)	52, 82, 624
CviQI	GTAC	3 cut(s)	563, 728, 849
DdeI	CTNAG	6 cut(s)	6, 71, 77, 281, 840, 939
DpnI	GATC	8 cut(s)	187, 233, 290, 717, 789, 816, 944, 1038
DpnII	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
EaeI	YGGCCR	2 cut(s)	534, 1020
Eam1104I	CTCTTC	3 cut(s)	30, 159, 341
EarI	CTCTTC	3 cut(s)	30, 159, 341
EciI	GGCGGA	2 cut(s)	176, 314
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	207, 611, 623
Eco24I	GRGCYC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	1100
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	1 cut(s)	875
Eco88I	CYCGRG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	139
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	111, 978
EcoRV	GATATC	1 cut(s)	1100
EcoT14I	CCWWGG	3 cut(s)	207, 611, 623
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	3 cut(s)	207, 611, 623
Esp3I	CGTCTC	2 cut(s)	991, 1053
FaeI	CATG	3 cut(s)	55, 85, 627
FaqI	GGGAC	3 cut(s)	368, 471, 604
FatI	CATG	3 cut(s)	51, 81, 623
FauI	CCCGC	2 cut(s)	140, 766
Fnu4HI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
FokI	GGATG	4 cut(s)	419, 491, 572, 977
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
FspBI	CTAG	5 cut(s)	89, 95, 432, 810, 1095
GluI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
GsaI	CCCAGC	1 cut(s)	974
GsuI	CTGGAG	1 cut(s)	1053
HaeIII	GGCC	6 cut(s)	69, 212, 263, 536, 983, 1022
HapII	CCGG	3 cut(s)	220, 247, 352
HgaI	GACGC	3 cut(s)	38, 302, 452
Hin1II	CATG	3 cut(s)	55, 85, 627
HinfI	GANTC	8 cut(s)	203, 359, 365, 521, 572, 617, 641, 878
HpaII	CCGG	3 cut(s)	220, 247, 352
HphI	GGTGA	2 cut(s)	650, 725
Hpy188I	TCNGA	5 cut(s)	9, 22, 364, 526, 907
Hpy188III	TCNNGA	3 cut(s)	839, 946, 1040
Hpy99I	CGWCG	3 cut(s)	32, 296, 446
HpyAV	CCTTC	2 cut(s)	622, 741
HpyCH4III	ACNGT	6 cut(s)	462, 567, 649, 832, 1002, 1064
HpyCH4IV	ACGT	1 cut(s)	898
HpyCH4V	TGCA	4 cut(s)	805, 902, 914, 934
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
HpyF3I	CTNAG	6 cut(s)	6, 71, 77, 281, 840, 939
HpySE526I	ACGT	1 cut(s)	898
Hsp92II	CATG	3 cut(s)	55, 85, 627
Kzo9I	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
LguI	GCTCTTC	3 cut(s)	30, 159, 341
LmnI	GCTCC	5 cut(s)	62, 115, 129, 301, 448
Lsp1109I	GCAGC	2 cut(s)	264, 463
LweI	GCATC	1 cut(s)	911
MaeI	CTAG	5 cut(s)	89, 95, 432, 810, 1095
MaeII	ACGT	1 cut(s)	898
MalI	GATC	8 cut(s)	187, 233, 290, 717, 789, 816, 944, 1038
MboI	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
MboII	GAAGA	7 cut(s)	47, 176, 212, 226, 358, 790, 810
MflI	RGATCY	2 cut(s)	231, 1036
MhlI	GDGCHC	2 cut(s)	59, 141
MlsI	TGGCCA	1 cut(s)	1022
MluCI	AATT	7 cut(s)	380, 527, 668, 691, 866, 1026, 1047
MluNI	TGGCCA	1 cut(s)	1022
MlyI	GAGTC	4 cut(s)	197, 374, 515, 626
MmeI	TCCRAC	1 cut(s)	321
Mox20I	TGGCCA	1 cut(s)	1022
MscI	TGGCCA	1 cut(s)	1022
MseI	TTAA	2 cut(s)	666, 737
Msp20I	TGGCCA	1 cut(s)	1022
MspI	CCGG	3 cut(s)	220, 247, 352
MspR9I	CCNGG	5 cut(s)	113, 220, 221, 353, 980
Mva1269I	GAATGC	2 cut(s)	328, 807
MvaI	CCWGG	2 cut(s)	113, 980
MvnI	CGCG	3 cut(s)	135, 296, 446
MwoI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
NciI	CCSGG	3 cut(s)	220, 221, 353
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
NlaIII	CATG	3 cut(s)	55, 85, 627
NmeAIII	GCCGAG	3 cut(s)	45, 289, 562
NspI	RCATGY	1 cut(s)	85
PciSI	GCTCTTC	3 cut(s)	30, 159, 341
PctI	GAATGC	2 cut(s)	328, 807
PfeI	GAWTC	4 cut(s)	359, 572, 641, 878
Pfl23II	CGTACG	1 cut(s)	848
PflFI	GACNNNGTC	1 cut(s)	462
PflMI	CCANNNNNTGG	1 cut(s)	552
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	150, 276, 279, 298, 453
PleI	GAGTC	4 cut(s)	197, 373, 515, 625
PpsI	GAGTC	4 cut(s)	197, 373, 515, 625
PshBI	ATTAAT	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	111, 978
PspFI	CCCAGC	1 cut(s)	970
PspGI	CCWGG	2 cut(s)	111, 978
PspLI	CGTACG	1 cut(s)	848
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PstNI	CAGNNNCTG	2 cut(s)	911, 922
PsuI	RGATCY	2 cut(s)	231, 1036
PsyI	GACNNNGTC	1 cut(s)	462
RsaI	GTAC	3 cut(s)	564, 729, 850
RsaNI	GTAC	3 cut(s)	563, 728, 849
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	3 cut(s)	30, 159, 341
SaqAI	TTAA	2 cut(s)	666, 737
SatI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
Sau3AI	GATC	8 cut(s)	185, 231, 288, 715, 787, 814, 942, 1036
SchI	GAGTC	4 cut(s)	197, 374, 515, 626
ScrFI	CCNGG	5 cut(s)	113, 220, 221, 353, 980
SduI	GDGCHC	2 cut(s)	59, 141
SfaNI	GCATC	1 cut(s)	911
SfcI	CTRYAG	2 cut(s)	119, 648
SmaI	CCCGGG	1 cut(s)	221
SmlI	CTYRAG	2 cut(s)	578, 1040
SmoI	CTYRAG	2 cut(s)	578, 1040
Sse9I	AATT	7 cut(s)	380, 527, 668, 691, 866, 1026, 1047
SsiI	CCGC	8 cut(s)	133, 148, 161, 274, 296, 299, 446, 773
SspI	AATATT	2 cut(s)	703, 1085
SspMI	CTAG	5 cut(s)	89, 95, 432, 810, 1095
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	5 cut(s)	111, 218, 219, 351, 978
StyI	CCWWGG	3 cut(s)	207, 611, 623
TaaI	ACNGT	6 cut(s)	462, 567, 649, 832, 1002, 1064
TaiI	ACGT	1 cut(s)	901
TaqI	TCGA	6 cut(s)	188, 291, 333, 368, 644, 876
TasI	AATT	7 cut(s)	380, 527, 668, 691, 866, 1026, 1047
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	3 cut(s)	151, 277, 299
TfiI	GAWTC	4 cut(s)	359, 572, 641, 878
Tru1I	TTAA	2 cut(s)	666, 737
Tru9I	TTAA	2 cut(s)	666, 737
TscAI	CASTG	4 cut(s)	467, 490, 916, 936
TseI	GCWGC	2 cut(s)	277, 451
TspDTI	ATGAA	2 cut(s)	585, 723
TspGWI	ACGGA	1 cut(s)	1092
TspMI	CCCGGG	1 cut(s)	219
TspRI	CASTG	4 cut(s)	467, 490, 916, 936
Tth111I	GACNNNGTC	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	552
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	3 cut(s)	691, 866, 1047
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XmaI	CCCGGG	1 cut(s)	219
XspI	CTAG	5 cut(s)	89, 95, 432, 810, 1095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.