Prupe.5G019400_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
2124121 .. 2128259
4139 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G019400.1

Sequence Viewer

Length: 1542 bp
ATGCCGACCCGTAATAGAGACAAATTTCATGTCCTCTACGGCTATACCCAATCCCAGAAACGCAGGGTATACTGCCCAAAAGCGAAAAAGGTTCCTTTCCCCAATTCACAAACAGTGACACACCAAAAAGCGACTCGCTTCCCAAACTCACACAGTTCCAAAACCCAAAAGCTCTCCTTTTTCCCTCTCTTCCCTCTCTCTGCCCAGAAGACCAAGGCCACCAAAAACCTTCCTCTCAGAGTCACAAACAAACACTCACACAAACCCAAAAGCGACTCACTTCCCAAGCAAAACCCAAAGTTCCCTTTCCCATCTCTCTGTACTTTTCTCTCCGTACCAGTCATGGCTCAAAACAGACCCAAACAACAAGAAGTAGAAGGAGATGAACAAGACGATTTGAAGAAGCTTATGAGCTCGTACCTTGGTCTGAGCTTGGGCATTTTCTTGGCTTTAGCTCCAACCAAGTTCCAAGAGCTACAGAACCAAGTGAGCGAGCTCTCTGCGAGGCTATGGCAAGCGGAAGAACAAGTGAGACAGATGAGATCGAGAAGAAAAGAGGACTCGAAAGCCAACGCGAGGGTTGTGGAGATCTTCGCCAGCCACCGCAACGCTTGGCAGGCGGAGGAGAAGCGGCTGCTGAACCAGATCGACGCGGCCCACCAAGAAATTGCTCACCTCCATGGAAGGATTGTGGAGTTGGAGAAAACCCAGGACGAGTCGAGCGCTAGGATTCAAGATTTGGAGAGAGAGGTTGGGGAGAGGGACGACATGATTGGGTTCATGGCCAGCAGAGGCGGTGAGGCTGAAGAAGACGACCACTTTGGCCTCCTCCAATCACAACAACAACATCAAGTCAAGGATGATGTGAATGTGTACGACAATGCCATTGCCTTTGGCTTTGACTCCCACTTGGTGGCCGATGCTTCCAAGCTCTGGCAGGATGTACAGTATGAGTCCCTTGAACCATTGTATCATATGAAGCATTTTGTACCAAGAAGGGAGTCCCCTTGGAAGCTAGATGGTGAATCGACCAGAGTATCCTCTAAACTAAAATTACTTGAACAAGAATTGCTAAATTTGGAAAATATTGGAAACAGTGATCTTTCCAAGGTACCTTCATTGATGAGGAAGCAGGCCAAGAGGTATCAAGCTCTTGCAGGGAAGATAGATGATCTGTGCAGAAGAATGCAGGATAGTGATCCCTCTGAACCCACACTCAGTCCAGAGTTTCGTACGCAAAGACAAACAGAATTTTTACTTGAATCATTTAGACTTCAGCAACGTGCATCAGAAACTGCACAGAAGCTGATGGCAGTACAAACAGAGATTGGGAAGAGTTATTATGGGGGTGAGGTGGGGAACCAGGCCAAACTTACCACTCGACGGTCTTTGGATTCCATTAGAAACAACTTCAAAGACATCCAGAGAAATTTGGAGATATGGTTGGCCAGAATTATTGGAGATCTTGAAGGTATTTTGGCCAGAGACGGTGCTTCTCGCGTAAGGGAATACTATATTTCTAGGTATCCTTTTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

514

Amino Acids

59.17

Weight (kDa)

9.27

Isoelectric Point (pI)

55.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1111
AccB1I GGYRCC 1 cut(s) 1111
AccB7I CCANNNNNTGG 2 cut(s) 913, 933
AccI GTMKAC 1 cut(s) 69
AccII CGCG 3 cut(s) 575, 653, 1500
AciI CCGC 6 cut(s) 518, 604, 620, 631, 653, 795
AclWI GGATC 1 cut(s) 1193
AcoI YGGCCR 4 cut(s) 783, 915, 1446, 1479
AcsI RAATTY 4 cut(s) 23, 1075, 1250, 1429
AcuI CTGAAG 2 cut(s) 825, 1259
AdeI CACNNNGTG 1 cut(s) 913
AfaI GTAC 9 cut(s) 322, 336, 419, 875, 945, 990, 1113, 1234, 1317
AfeI AGCGCT 1 cut(s) 724
AfiI CCNNNNNNNGG 4 cut(s) 576, 913, 933, 1383
AgsI TTSAA 8 cut(s) 400, 734, 962, 1061, 1262, 1414, 1469, 1538
AjnI CCWGG 2 cut(s) 708, 1362
Alw21I GWGCWC 2 cut(s) 416, 498
Alw26I GTCTC 3 cut(s) 12, 526, 1479
AlwI GGATC 1 cut(s) 1193
AlwNI CAGNNNCTG 2 cut(s) 1295, 1306
Aor51HI AGCGCT 1 cut(s) 724
AoxI GGCC 9 cut(s) 216, 654, 783, 823, 915, 1134, 1365, 1446, 1479
ApeKI GCWGC 1 cut(s) 634
ApoI RAATTY 4 cut(s) 23, 1075, 1250, 1429
ArsI GACNNNNNNTTYG 4 cut(s) 15, 47, 803, 835
Asp718I GGTACC 1 cut(s) 1111
AspLEI GCGC 1 cut(s) 725
AspS9I GGNCC 1 cut(s) 655
AsuHPI GGTGA 4 cut(s) 665, 809, 1034, 1361
BaeI ACNNNNGTAYC 4 cut(s) 953, 986, 1020, 1053
BalI TGGCCA 3 cut(s) 785, 1448, 1481
BanI GGYRCC 1 cut(s) 1111
BanII GRGCYC 2 cut(s) 416, 498
BbsI GAAGAC 2 cut(s) 215, 816
Bbv12I GWGCWC 2 cut(s) 416, 498
BbvI GCAGC 1 cut(s) 621
BccI CCATC 3 cut(s) 319, 1013, 1303
BceAI ACGGC 1 cut(s) 55
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 2 cut(s) 710, 1364
BciVI GTATCC 2 cut(s) 1048, 1536
BcoDI GTCTC 3 cut(s) 12, 526, 1479
BfaI CTAG 3 cut(s) 726, 1016, 1521
BfmI CTRYAG 1 cut(s) 476
BfoI RGCGCY 1 cut(s) 726
BfuI GTATCC 2 cut(s) 1048, 1536
BglII AGATCT 2 cut(s) 588, 1462
BisI GCNGC 3 cut(s) 632, 635, 654
BlsI GCNGC 3 cut(s) 633, 636, 655
Bme1390I CCNGG 2 cut(s) 710, 1364
BmgT120I GGNCC 1 cut(s) 655
BmiI GGNNCC 3 cut(s) 93, 1113, 1361
BmrFI CCNGG 2 cut(s) 710, 1364
BmsI GCATC 2 cut(s) 910, 1295
BpiI GAAGAC 2 cut(s) 215, 816
BsaBI GATNNNNATC 1 cut(s) 1197
BsaJI CCNNGG 6 cut(s) 213, 421, 679, 708, 1007, 1107
BsaXI ACNNNNNCTCC 2 cut(s) 1427, 1457
Bsc4I CCNNNNNNNGG 4 cut(s) 576, 913, 933, 1383
Bse1I ACTGG 1 cut(s) 338
Bse3DI GCAATG 1 cut(s) 885
Bse8I GATNNNNATC 1 cut(s) 1197
BseBI CCWGG 2 cut(s) 710, 1364
BseDI CCNNGG 6 cut(s) 213, 421, 679, 708, 1007, 1107
BseGI GGATG 3 cut(s) 865, 946, 1419
BseJI GATNNNNATC 1 cut(s) 1197
BseLI CCNNNNNNNGG 4 cut(s) 576, 913, 933, 1383
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 3 cut(s) 250, 419, 1231
BseNI ACTGG 1 cut(s) 338
BseRI GAGGAG 2 cut(s) 638, 818
BseXI GCAGC 1 cut(s) 621
BsgI GTGCAG 2 cut(s) 1198, 1281
Bsh1236I CGCG 3 cut(s) 575, 653, 1500
BshFI GGCC 9 cut(s) 218, 656, 785, 825, 917, 1136, 1367, 1448, 1481
BshNI GGYRCC 1 cut(s) 1111
BsiHKAI GWGCWC 2 cut(s) 416, 498
BsiWI CGTACG 1 cut(s) 1232
BslFI GGGAC 3 cut(s) 776, 940, 988
BslI CCNNNNNNNGG 4 cut(s) 576, 913, 933, 1383
BsmAI GTCTC 3 cut(s) 12, 526, 1479
BsmBI CGTCTC 1 cut(s) 1479
BsmFI GGGAC 3 cut(s) 776, 940, 988
BsmI GAATGC 1 cut(s) 1191
BsnI GGCC 9 cut(s) 218, 656, 785, 825, 917, 1136, 1367, 1448, 1481
Bsp1286I GDGCHC 2 cut(s) 416, 498
Bsp1407I TGTACA 1 cut(s) 943
Bsp143I GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
Bsp19I CCATGG 1 cut(s) 679
BspACI CCGC 6 cut(s) 518, 604, 620, 631, 653, 795
BspANI GGCC 9 cut(s) 218, 656, 785, 825, 917, 1136, 1367, 1448, 1481
BspCNI CTCAG 3 cut(s) 249, 420, 1230
BspFNI CGCG 3 cut(s) 575, 653, 1500
BspLI GGNNCC 3 cut(s) 93, 1113, 1361
BspPI GGATC 1 cut(s) 1193
BspT107I GGYRCC 1 cut(s) 1111
BsrDI GCAATG 1 cut(s) 885
BsrGI TGTACA 1 cut(s) 943
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 6 cut(s) 213, 421, 679, 708, 1007, 1107
BssMI GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
BssNAI GTATAC 1 cut(s) 70
BssT1I CCWWGG 5 cut(s) 213, 421, 679, 1007, 1107
Bst1107I GTATAC 1 cut(s) 70
Bst2UI CCWGG 2 cut(s) 710, 1364
Bst4CI ACNGT 6 cut(s) 115, 155, 948, 1097, 1386, 1490
Bst6I CTCTTC 2 cut(s) 194, 1328
BstAUI TGTACA 1 cut(s) 943
BstC8I GCNNGC 6 cut(s) 494, 516, 598, 618, 787, 1134
BstDEI CTNAG 3 cut(s) 236, 428, 1217
BstDSI CCRYGG 1 cut(s) 679
BstF5I GGATG 3 cut(s) 865, 946, 1419
BstFNI CGCG 3 cut(s) 575, 653, 1500
BstH2I RGCGCY 1 cut(s) 726
BstHHI GCGC 1 cut(s) 725
BstKTI GATC 7 cut(s) 545, 591, 648, 1102, 1174, 1201, 1465
BstMAI GTCTC 3 cut(s) 12, 526, 1479
BstMBI GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
BstMWI GCNNNNNNNGC 1 cut(s) 617
BstNI CCWGG 2 cut(s) 710, 1364
BstSCI CCNGG 2 cut(s) 708, 1362
BstSFI CTRYAG 1 cut(s) 476
BstUI CGCG 3 cut(s) 575, 653, 1500
BstV1I GCAGC 1 cut(s) 621
BstV2I GAAGAC 2 cut(s) 215, 816
BstX2I RGATCY 2 cut(s) 588, 1462
BstYI RGATCY 2 cut(s) 588, 1462
BstZ17I GTATAC 1 cut(s) 70
BsuI GTATCC 2 cut(s) 1048, 1536
BsuRI GGCC 9 cut(s) 218, 656, 785, 825, 917, 1136, 1367, 1448, 1481
BtgI CCRYGG 1 cut(s) 679
BtsCI GGATG 3 cut(s) 865, 946, 1419
BtsIMutI CAGTG 2 cut(s) 120, 1102
Cac8I GCNNGC 6 cut(s) 494, 516, 598, 618, 787, 1134
CaiI CAGNNNCTG 2 cut(s) 1295, 1306
CfoI GCGC 1 cut(s) 725
Cfr13I GGNCC 1 cut(s) 655
CseI GACGC 1 cut(s) 659
Csp6I GTAC 9 cut(s) 321, 335, 418, 874, 944, 989, 1112, 1233, 1316
CviAII CATG 5 cut(s) 29, 343, 680, 769, 781
CviQI GTAC 9 cut(s) 321, 335, 418, 874, 944, 989, 1112, 1233, 1316
DdeI CTNAG 3 cut(s) 236, 428, 1217
DpnI GATC 7 cut(s) 544, 590, 647, 1101, 1173, 1200, 1464
DpnII GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
DraIII CACNNNGTG 1 cut(s) 913
EaeI YGGCCR 4 cut(s) 783, 915, 1446, 1479
Eam1104I CTCTTC 2 cut(s) 194, 1328
EarI CTCTTC 2 cut(s) 194, 1328
EciI GGCGGA 1 cut(s) 635
Ecl136II GAGCTC 2 cut(s) 414, 496
Eco130I CCWWGG 5 cut(s) 213, 421, 679, 1007, 1107
Eco24I GRGCYC 2 cut(s) 416, 498
Eco47III AGCGCT 1 cut(s) 724
Eco53kI GAGCTC 2 cut(s) 414, 496
Eco57I CTGAAG 2 cut(s) 825, 1259
EcoICRI GAGCTC 2 cut(s) 414, 496
EcoRII CCWGG 2 cut(s) 708, 1362
EcoT14I CCWWGG 5 cut(s) 213, 421, 679, 1007, 1107
EcoT38I GRGCYC 2 cut(s) 416, 498
ErhI CCWWGG 5 cut(s) 213, 421, 679, 1007, 1107
Esp3I CGTCTC 1 cut(s) 1479
FaeI CATG 5 cut(s) 32, 346, 683, 772, 784
FalI AAGNNNNNCTT 2 cut(s) 161, 193
FaqI GGGAC 3 cut(s) 776, 940, 988
FatI CATG 5 cut(s) 28, 342, 679, 768, 780
FauNDI CATATG 1 cut(s) 975
FblI GTMKAC 1 cut(s) 69
Fnu4HI GCNGC 3 cut(s) 632, 635, 654
FokI GGATG 3 cut(s) 872, 953, 1406
FriOI GRGCYC 2 cut(s) 416, 498
Fsp4HI GCNGC 3 cut(s) 632, 635, 654
FspBI CTAG 3 cut(s) 726, 1016, 1521
GlaI GCGC 1 cut(s) 724
GluI GCNGC 3 cut(s) 632, 635, 654
HaeII RGCGCY 1 cut(s) 726
HaeIII GGCC 9 cut(s) 218, 656, 785, 825, 917, 1136, 1367, 1448, 1481
HgaI GACGC 1 cut(s) 659
HhaI GCGC 1 cut(s) 725
Hin1II CATG 5 cut(s) 32, 346, 683, 772, 784
Hin6I GCGC 1 cut(s) 723
HinP1I GCGC 1 cut(s) 723
HindIII AAGCTT 1 cut(s) 404
HphI GGTGA 4 cut(s) 665, 809, 1034, 1361
Hpy166II GTNNAC 2 cut(s) 70, 874
Hpy188I TCNGA 4 cut(s) 239, 429, 1207, 1291
Hpy188III TCNNGA 5 cut(s) 546, 734, 1223, 1423, 1466
Hpy8I GTNNAC 2 cut(s) 70, 874
Hpy99I CGWCG 2 cut(s) 653, 1386
HpyAV CCTTC 6 cut(s) 239, 371, 678, 990, 1125, 1463
HpyCH4III ACNGT 6 cut(s) 115, 155, 948, 1097, 1386, 1490
HpyCH4IV ACGT 1 cut(s) 1282
HpyCH4V TGCA 5 cut(s) 1157, 1179, 1189, 1286, 1298
HpyF10VI GCNNNNNNNGC 1 cut(s) 617
HpyF3I CTNAG 3 cut(s) 236, 428, 1217
HpySE526I ACGT 1 cut(s) 1282
Hsp92II CATG 5 cut(s) 32, 346, 683, 772, 784
HspAI GCGC 1 cut(s) 723
KpnI GGTACC 1 cut(s) 1115
Kzo9I GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 1 cut(s) 621
LweI GCATC 2 cut(s) 910, 1295
MaeI CTAG 3 cut(s) 726, 1016, 1521
MaeII ACGT 1 cut(s) 1282
MaeIII GTNAC 2 cut(s) 115, 241
MalI GATC 7 cut(s) 544, 590, 647, 1101, 1173, 1200, 1464
MboI GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
MflI RGATCY 2 cut(s) 588, 1462
MhlI GDGCHC 2 cut(s) 416, 498
MlsI TGGCCA 3 cut(s) 785, 1448, 1481
MluCI AATT 9 cut(s) 23, 103, 666, 1052, 1067, 1075, 1250, 1429, 1452
MluNI TGGCCA 3 cut(s) 785, 1448, 1481
MlyI GAGTC 8 cut(s) 127, 249, 269, 554, 725, 896, 962, 1010
MmeI TCCRAC 2 cut(s) 482, 678
Mox20I TGGCCA 3 cut(s) 785, 1448, 1481
MscI TGGCCA 3 cut(s) 785, 1448, 1481
MslI CAYNNNNRTG 1 cut(s) 678
Msp20I TGGCCA 3 cut(s) 785, 1448, 1481
MspR9I CCNGG 2 cut(s) 710, 1364
Mva1269I GAATGC 1 cut(s) 1191
MvaI CCWGG 2 cut(s) 710, 1364
MvnI CGCG 3 cut(s) 575, 653, 1500
MwoI GCNNNNNNNGC 1 cut(s) 617
NcoI CCATGG 1 cut(s) 679
NdeI CATATG 1 cut(s) 975
NdeII GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
NlaIII CATG 5 cut(s) 32, 346, 683, 772, 784
NlaIV GGNNCC 3 cut(s) 93, 1113, 1361
NmuCI GTSAC 2 cut(s) 115, 241
PctI GAATGC 1 cut(s) 1191
PfeI GAWTC 4 cut(s) 730, 1025, 1262, 1394
Pfl23II CGTACG 1 cut(s) 1232
PflMI CCANNNNNTGG 2 cut(s) 913, 933
PkrI GCNGC 3 cut(s) 633, 636, 655
PleI GAGTC 8 cut(s) 127, 248, 269, 554, 724, 896, 961, 1009
PpsI GAGTC 8 cut(s) 127, 248, 269, 554, 724, 896, 961, 1009
Psp124BI GAGCTC 2 cut(s) 416, 498
Psp6I CCWGG 2 cut(s) 708, 1362
PspGI CCWGG 2 cut(s) 708, 1362
PspLI CGTACG 1 cut(s) 1232
PspN4I GGNNCC 3 cut(s) 93, 1113, 1361
PspPI GGNCC 1 cut(s) 655
PstNI CAGNNNCTG 2 cut(s) 1295, 1306
PsuI RGATCY 2 cut(s) 588, 1462
RsaI GTAC 9 cut(s) 322, 336, 419, 875, 945, 990, 1113, 1234, 1317
RsaNI GTAC 9 cut(s) 321, 335, 418, 874, 944, 989, 1112, 1233, 1316
RseI CAYNNNNRTG 1 cut(s) 678
SacI GAGCTC 2 cut(s) 416, 498
SatI GCNGC 3 cut(s) 632, 635, 654
Sau3AI GATC 7 cut(s) 542, 588, 645, 1099, 1171, 1198, 1462
Sau96I GGNCC 1 cut(s) 655
SchI GAGTC 8 cut(s) 127, 249, 269, 554, 725, 896, 962, 1010
ScrFI CCNGG 2 cut(s) 710, 1364
SduI GDGCHC 2 cut(s) 416, 498
SfaNI GCATC 2 cut(s) 910, 1295
SfcI CTRYAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 678
Sse9I AATT 9 cut(s) 23, 103, 666, 1052, 1067, 1075, 1250, 1429, 1452
SsiI CCGC 6 cut(s) 518, 604, 620, 631, 653, 795
SspI AATATT 1 cut(s) 1087
SspMI CTAG 3 cut(s) 726, 1016, 1521
SstI GAGCTC 2 cut(s) 416, 498
StyD4I CCNGG 2 cut(s) 708, 1362
StyI CCWWGG 5 cut(s) 213, 421, 679, 1007, 1107
TaaI ACNGT 6 cut(s) 115, 155, 948, 1097, 1386, 1490
TaiI ACGT 1 cut(s) 1285
TaqI TCGA 6 cut(s) 545, 563, 648, 719, 1028, 1381
TasI AATT 9 cut(s) 23, 103, 666, 1052, 1067, 1075, 1250, 1429, 1452
TatI WGTACW 3 cut(s) 320, 943, 1315
TauI GCSGC 2 cut(s) 634, 656
TfiI GAWTC 4 cut(s) 730, 1025, 1262, 1394
TscAI CASTG 2 cut(s) 120, 1102
TseFI GTSAC 2 cut(s) 115, 241
TseI GCWGC 1 cut(s) 634
Tsp45I GTSAC 2 cut(s) 115, 241
TspDTI ATGAA 5 cut(s) 17, 399, 769, 992, 1107
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 120, 1102
Van91I CCANNNNNTGG 2 cut(s) 913, 933
XapI RAATTY 4 cut(s) 23, 1075, 1250, 1429
XmiI GTMKAC 1 cut(s) 69
XspI CTAG 3 cut(s) 726, 1016, 1521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.