Rorug07G0143600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0009161
Physical Location & Seq
Forward (+)
11338704 .. 11339635
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0143600.1

Sequence Viewer

Length: 606 bp
ATGGAACCACGTCGTCCGCAGCAGAGGCTTCATCAAAGAGCATCACGAACACTCTGCCATGAATTCCATATTTCCATACATAATTACACCCTCATACGTTTAACTAATAAGGACGAATTCTACTCAGCGGCCTTCTCCAATGACACGTTCGGCCAACAAAAGCAAATCAAGCCTCATCCATTATATTCCGTTAAAGAAAGGAATAGACTTGGTCTTAGATCCTATGTGGTTGCCAAGTACAATGGACTGATCTTACTTCAAGTTCAAGTTCTCCTCCGGAAGAAGTACTACCTTGTTCTATGGAATCCGACGATTGCCAAGCATAGAAGGATCCCCTATGAGTTCGAGAAACATAAACGATACCATAGGGTTTTCAGAGTAGGGTATGATTCTGATGCAGACGACTTGAAGGTCTTTACTCTTGAGCAACGTTGTAATAATTTTGCGCAACTGTCTGATTTGAGTACCGAATTAAAAGTTTACAGTCTCGCATCTGGCACATGCGAAACCATAAAACTAGAACTTCCATATCATAATTTGCTACTTATTAGAACACCTGTGGTGTTGATGAACAATTCTCGTGTAGCTTGGGTGATGAAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.96

Weight (kDa)

9.94

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 39 - 173 4.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc16I TGCGCA 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 276
AciI CCGC 2 cut(s) 17, 128
AclI AACGTT 1 cut(s) 430
AclWI GGATC 3 cut(s) 213, 325, 338
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 2 cut(s) 62, 116
AfaI GTAC 3 cut(s) 239, 287, 466
AflIII ACRYGT 1 cut(s) 144
AgsI TTSAA 3 cut(s) 260, 266, 409
AjiI CACGTC 1 cut(s) 11
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 1 cut(s) 587
AluI AGCT 1 cut(s) 587
Alw26I GTCTC 1 cut(s) 491
AlwI GGATC 3 cut(s) 213, 325, 338
Aor13HI TCCGGA 1 cut(s) 276
AoxI GGCC 2 cut(s) 129, 151
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 2 cut(s) 62, 116
AspLEI GCGC 1 cut(s) 448
AsuHPI GGTGA 1 cut(s) 604
BamHI GGATCC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 272, 304
BauI CACGAG 1 cut(s) 579
BbvI GCAGC 1 cut(s) 31
BcgI CGANNNNNNTGC 2 cut(s) 36, 70
BcoDI GTCTC 1 cut(s) 491
BfaI CTAG 1 cut(s) 518
BisI GCNGC 2 cut(s) 20, 129
BlsI GCNGC 2 cut(s) 21, 130
BmcAI AGTACT 1 cut(s) 287
BmgBI CACGTC 1 cut(s) 11
BmiI GGNNCC 2 cut(s) 6, 332
BmsI GCATC 3 cut(s) 50, 385, 500
BpuEI CTTGAG 1 cut(s) 443
BsaWI WCCGGW 1 cut(s) 276
BseAI TCCGGA 1 cut(s) 276
BseGI GGATG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 131, 153
BsiSI CCGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 491
BsnI GGCC 2 cut(s) 131, 153
Bsp13I TCCGGA 1 cut(s) 276
Bsp143I GATC 3 cut(s) 218, 249, 330
BspACI CCGC 2 cut(s) 17, 128
BspANI GGCC 2 cut(s) 131, 153
BspCNI CTCAG 1 cut(s) 137
BspEI TCCGGA 1 cut(s) 276
BspLI GGNNCC 2 cut(s) 6, 332
BspPI GGATC 3 cut(s) 213, 325, 338
BssMI GATC 3 cut(s) 218, 249, 330
BssSI CACGAG 1 cut(s) 579
Bst2BI CACGAG 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 453, 485
BstDEI CTNAG 2 cut(s) 124, 215
BstF5I GGATG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 3 cut(s) 221, 252, 333
BstMAI GTCTC 1 cut(s) 491
BstMBI GATC 3 cut(s) 218, 249, 330
BstMWI GCNNNNNNNGC 2 cut(s) 25, 169
BstNSI RCATGY 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 31
BstX2I RGATCY 2 cut(s) 218, 330
BstYI RGATCY 2 cut(s) 218, 330
BsuRI GGCC 2 cut(s) 131, 153
BtrI CACGTC 1 cut(s) 11
BtsCI GGATG 1 cut(s) 175
CfoI GCGC 1 cut(s) 448
Csp6I GTAC 3 cut(s) 238, 286, 465
CviAII CATG 2 cut(s) 59, 501
CviJI RGCY 5 cut(s) 28, 131, 153, 172, 587
CviKI_1 RGCY 5 cut(s) 28, 131, 153, 172, 587
CviQI GTAC 3 cut(s) 238, 286, 465
DdeI CTNAG 2 cut(s) 124, 215
DpnI GATC 3 cut(s) 220, 251, 332
DpnII GATC 3 cut(s) 218, 249, 330
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 1 cut(s) 151
EcoRI GAATTC 2 cut(s) 62, 116
FaeI CATG 2 cut(s) 62, 504
FatI CATG 2 cut(s) 58, 500
Fnu4HI GCNGC 2 cut(s) 20, 129
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 20, 129
FspBI CTAG 1 cut(s) 518
FspI TGCGCA 1 cut(s) 447
GlaI GCGC 1 cut(s) 447
GluI GCNGC 2 cut(s) 20, 129
HaeIII GGCC 2 cut(s) 131, 153
HapII CCGG 1 cut(s) 277
HhaI GCGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 62, 504
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HinfI GANTC 2 cut(s) 304, 389
HpaII CCGG 1 cut(s) 277
HphI GGTGA 1 cut(s) 604
Hpy166II GTNNAC 1 cut(s) 481
Hpy188I TCNGA 4 cut(s) 309, 377, 394, 457
Hpy188III TCNNGA 4 cut(s) 45, 277, 346, 422
Hpy8I GTNNAC 1 cut(s) 481
Hpy99I CGWCG 2 cut(s) 15, 313
HpyAV CCTTC 3 cut(s) 142, 321, 403
HpyCH4III ACNGT 2 cut(s) 453, 485
HpyCH4IV ACGT 4 cut(s) 10, 97, 146, 430
HpyCH4V TGCA 1 cut(s) 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 169
HpyF3I CTNAG 2 cut(s) 124, 215
HpySE526I ACGT 4 cut(s) 10, 97, 146, 430
Hsp92II CATG 2 cut(s) 62, 504
HspAI GCGC 1 cut(s) 446
Kpn2I TCCGGA 1 cut(s) 276
Kzo9I GATC 3 cut(s) 218, 249, 330
LpnPI CCDG 3 cut(s) 290, 480, 570
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 3 cut(s) 50, 385, 500
MaeI CTAG 1 cut(s) 518
MaeII ACGT 4 cut(s) 10, 97, 146, 430
MalI GATC 3 cut(s) 220, 251, 332
MboI GATC 3 cut(s) 218, 249, 330
MboII GAAGA 1 cut(s) 292
MflI RGATCY 2 cut(s) 218, 330
MluCI AATT 7 cut(s) 62, 82, 116, 439, 470, 535, 574
MmeI TCCRAC 1 cut(s) 332
MnlI CCTC 4 cut(s) 18, 101, 183, 284
MroI TCCGGA 1 cut(s) 276
MseI TTAA 3 cut(s) 101, 192, 473
MspA1I CMGCKG 1 cut(s) 128
MspI CCGG 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 25, 169
NdeII GATC 3 cut(s) 218, 249, 330
NlaIII CATG 2 cut(s) 62, 504
NlaIV GGNNCC 2 cut(s) 6, 332
NsbI TGCGCA 1 cut(s) 447
NspI RCATGY 1 cut(s) 504
PfeI GAWTC 2 cut(s) 304, 389
PflFI GACNNNGTC 1 cut(s) 210
PkrI GCNGC 2 cut(s) 21, 130
Psp1406I AACGTT 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 6, 332
PsuI RGATCY 2 cut(s) 218, 330
PsyI GACNNNGTC 1 cut(s) 210
RsaI GTAC 3 cut(s) 239, 287, 466
RsaNI GTAC 3 cut(s) 238, 286, 465
SaqAI TTAA 3 cut(s) 101, 192, 473
SatI GCNGC 2 cut(s) 20, 129
Sau3AI GATC 3 cut(s) 218, 249, 330
ScaI AGTACT 1 cut(s) 287
SetI ASST 9 cut(s) 13, 100, 149, 294, 414, 433, 559, 589, 605
SfaNI GCATC 3 cut(s) 50, 385, 500
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 7 cut(s) 62, 82, 116, 439, 470, 535, 574
SsiI CCGC 2 cut(s) 17, 128
SspMI CTAG 1 cut(s) 518
TaaI ACNGT 2 cut(s) 453, 485
TaiI ACGT 4 cut(s) 13, 100, 149, 433
TaqI TCGA 1 cut(s) 345
TasI AATT 7 cut(s) 62, 82, 116, 439, 470, 535, 574
TatI WGTACW 2 cut(s) 237, 285
TauI GCSGC 1 cut(s) 131
TfiI GAWTC 2 cut(s) 304, 389
Tru1I TTAA 3 cut(s) 101, 192, 473
Tru9I TTAA 3 cut(s) 101, 192, 473
TseI GCWGC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 20, 75, 584
TspGWI ACGGA 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 210
XapI RAATTY 2 cut(s) 62, 116
XceI RCATGY 1 cut(s) 504
XspI CTAG 1 cut(s) 518
ZrmI AGTACT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.