Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8487661.1

Orthogroup ID

OG0009161

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1954

Gene Structure 1954 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8487661.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

gatgtacagtgtgaatcccttgaaccattgtatcatacgaagcattttgtgccaagggagtccccatggaaggttgatggtgaatcgactgtagtatcctctaaacttaaattgcttgaacaggaactactgaatttggaaaatattggaaagggtgatctttctaaagtaccttcattaatgaggaagcagacaaagaggtatcaagctcttgcggggaagatagatgatctatgccgaagaatgcaggctagtgatccctgtgaagccacagtaagtcctgagtttcgtacgcaaagacaaacagaatttttactcgaatcatttagacttcagcaacgtgcatcagacactgcacagaagctgatggcagtgcaaactgagatcgggaaaagttattatggggatgagctggggaaccaggccaaacttacgatgagacggtctttggactccattagaaacaatttcagagaacttcaaaggaatttggagatatggttggccagaattactggagatcttgagggaattcttgccagagacggtgcttctcgtgtaagggaatattatgtagctagatatccttttgttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.99

Weight (kDa)

8.74

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45900
fragaria_vesca	FvH4_5g24100 FvH4_5g24100
malus_domestica	MD00G1002200.v1.1 MD06G1017100.v1.1
prunus_persica	Prupe.5G019400_v2.0.a1 Prupe.5G019400_v2.0.a1
pyrus_communis	pycom06g01380 pycom16g25530
rosa_chinensis	RchiOBHm_Chr7g0213631
rosa_laevigata	RLG00000002795
rosa_multiflora	Rmu_co8487661.1_g000001 Rmu_sc0008101.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245730
rosa_rugosa	Rorug07G0143500 Rorug07G0143600
rosa_samantha	Rh7AG276600 Rh7BG270800 Rh7CG295600 Rh7DG282800
rosa_wichuraiana	Rw0G023510 Rw7G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	4 cut(s)	133, 308, 487, 531
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	6, 171, 292
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	4 cut(s)	23, 119, 482, 596
AjnI	CCWGG	1 cut(s)	420
AluBI	AGCT	4 cut(s)	209, 364, 412, 578
AluI	AGCT	4 cut(s)	209, 364, 412, 578
Alw26I	GTCTC	2 cut(s)	433, 537
AlwI	GGATC	1 cut(s)	251
AlwNI	CAGNNNCTG	2 cut(s)	353, 364
AoxI	GGCC	2 cut(s)	423, 504
ApoI	RAATTY	4 cut(s)	133, 308, 487, 531
AseI	ATTAAT	1 cut(s)	179
AsuHPI	GGTGA	2 cut(s)	92, 167
BaeI	ACNNNNGTAYC	4 cut(s)	14, 47, 78, 111
BalI	TGGCCA	1 cut(s)	506
BauI	CACGAG	1 cut(s)	555
BccI	CCATC	2 cut(s)	71, 361
BciT130I	CCWGG	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	433, 537
BfaI	CTAG	2 cut(s)	252, 579
BfmI	CTRYAG	1 cut(s)	90
BfuI	GTATCC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	520
Bme1390I	CCNGG	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	419
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	353
BpmI	CTGGAG	1 cut(s)	537
BpuEI	CTTGAG	1 cut(s)	545
BsaJI	CCNNGG	2 cut(s)	53, 65
BsaXI	ACNNNNNCTCC	2 cut(s)	485, 515
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	520
BseBI	CCWGG	1 cut(s)	422
BseDI	CCNNGG	2 cut(s)	53, 65
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	273, 372
BseNI	ACTGG	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	412
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	425, 506
BsiWI	CGTACG	1 cut(s)	290
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmAI	GTCTC	2 cut(s)	433, 537
BsmBI	CGTCTC	2 cut(s)	433, 537
BsmFI	GGGAC	1 cut(s)	46
BsmI	GAATGC	1 cut(s)	249
BsnI	GGCC	2 cut(s)	425, 506
Bsp1407I	TGTACA	1 cut(s)	4
Bsp143I	GATC	5 cut(s)	157, 229, 256, 384, 520
Bsp19I	CCATGG	1 cut(s)	65
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	2 cut(s)	425, 506
BspCNI	CTCAG	2 cut(s)	274, 373
BspLI	GGNNCC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	251
BsrGI	TGTACA	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	520
BssECI	CCNNGG	2 cut(s)	53, 65
BssMI	GATC	5 cut(s)	157, 229, 256, 384, 520
BssSI	CACGAG	1 cut(s)	555
BssT1I	CCWWGG	2 cut(s)	53, 65
Bst2BI	CACGAG	1 cut(s)	555
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	5 cut(s)	9, 91, 274, 444, 548
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstAUI	TGTACA	1 cut(s)	4
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	2 cut(s)	282, 381
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	412
BstKTI	GATC	5 cut(s)	160, 232, 259, 387, 523
BstMAI	GTCTC	2 cut(s)	433, 537
BstMBI	GATC	5 cut(s)	157, 229, 256, 384, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	49
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	425, 506
BtgI	CCRYGG	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	412
BtsI	GCAGTG	2 cut(s)	351, 378
BtsIMutI	CAGTG	3 cut(s)	14, 351, 378
Cac8I	GCNNGC	1 cut(s)	249
CaiI	CAGNNNCTG	2 cut(s)	353, 364
Csp6I	GTAC	3 cut(s)	5, 170, 291
CviAII	CATG	1 cut(s)	66
CviJI	RGCY	8 cut(s)	209, 251, 269, 364, 412, 425, 506, 578
CviKI_1	RGCY	8 cut(s)	209, 251, 269, 364, 412, 425, 506, 578
CviQI	GTAC	3 cut(s)	5, 170, 291
DdeI	CTNAG	2 cut(s)	282, 381
DpnI	GATC	5 cut(s)	159, 231, 258, 386, 522
DpnII	GATC	5 cut(s)	157, 229, 256, 384, 520
EaeI	YGGCCR	1 cut(s)	504
Eco130I	CCWWGG	2 cut(s)	53, 65
Eco32I	GATATC	1 cut(s)	584
Eco57I	CTGAAG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	531
EcoRII	CCWGG	1 cut(s)	420
EcoRV	GATATC	1 cut(s)	584
EcoT14I	CCWWGG	2 cut(s)	53, 65
ErhI	CCWWGG	2 cut(s)	53, 65
Esp3I	CGTCTC	2 cut(s)	433, 537
FaeI	CATG	1 cut(s)	69
FaiI	YATR	6 cut(s)	36, 67, 235, 402, 499, 573
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	1 cut(s)	65
FauI	CCCGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	419
FspBI	CTAG	2 cut(s)	252, 579
GsaI	CCCAGC	1 cut(s)	416
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	425, 506
Hin1II	CATG	1 cut(s)	69
HinfI	GANTC	5 cut(s)	14, 59, 83, 320, 452
HphI	GGTGA	2 cut(s)	92, 167
Hpy188I	TCNGA	2 cut(s)	349, 473
Hpy188III	TCNNGA	3 cut(s)	281, 388, 524
HpyAV	CCTTC	2 cut(s)	64, 183
HpyCH4III	ACNGT	5 cut(s)	9, 91, 274, 444, 548
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	4 cut(s)	247, 344, 356, 376
HpyF10VI	GCNNNNNNNGC	1 cut(s)	49
HpyF3I	CTNAG	2 cut(s)	282, 381
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	157, 229, 256, 384, 520
LweI	GCATC	1 cut(s)	353
MaeI	CTAG	2 cut(s)	252, 579
MaeII	ACGT	1 cut(s)	340
MalI	GATC	5 cut(s)	159, 231, 258, 386, 522
MboI	GATC	5 cut(s)	157, 229, 256, 384, 520
MboII	GAAGA	2 cut(s)	232, 252
MflI	RGATCY	1 cut(s)	520
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	7 cut(s)	110, 133, 308, 466, 487, 510, 531
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	2 cut(s)	68, 446
MnlI	CCTC	4 cut(s)	109, 177, 192, 520
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	2 cut(s)	108, 179
Msp20I	TGGCCA	1 cut(s)	506
MspR9I	CCNGG	1 cut(s)	422
Mva1269I	GAATGC	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	65
NdeII	GATC	5 cut(s)	157, 229, 256, 384, 520
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	419
PctI	GAATGC	1 cut(s)	249
PfeI	GAWTC	3 cut(s)	14, 83, 320
Pfl23II	CGTACG	1 cut(s)	290
PleI	GAGTC	2 cut(s)	67, 446
PpsI	GAGTC	2 cut(s)	67, 446
PshBI	ATTAAT	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	1 cut(s)	420
PspLI	CGTACG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	419
PsrI	GAACNNNNNNTAC	2 cut(s)	111, 143
PstNI	CAGNNNCTG	2 cut(s)	353, 364
PsuI	RGATCY	1 cut(s)	520
RsaI	GTAC	3 cut(s)	6, 171, 292
RsaNI	GTAC	3 cut(s)	5, 170, 291
SaqAI	TTAA	2 cut(s)	108, 179
Sau3AI	GATC	5 cut(s)	157, 229, 256, 384, 520
SchI	GAGTC	2 cut(s)	68, 446
ScrFI	CCNGG	1 cut(s)	422
SetI	ASST	8 cut(s)	75, 175, 203, 211, 343, 366, 414, 580
SfaNI	GCATC	1 cut(s)	353
SfcI	CTRYAG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	7 cut(s)	110, 133, 308, 466, 487, 510, 531
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	2 cut(s)	145, 569
SspMI	CTAG	2 cut(s)	252, 579
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	53, 65
TaaI	ACNGT	5 cut(s)	9, 91, 274, 444, 548
TaiI	ACGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	86, 318
TasI	AATT	7 cut(s)	110, 133, 308, 466, 487, 510, 531
TatI	WGTACW	1 cut(s)	4
TfiI	GAWTC	3 cut(s)	14, 83, 320
Tru1I	TTAA	2 cut(s)	108, 179
Tru9I	TTAA	2 cut(s)	108, 179
TscAI	CASTG	3 cut(s)	14, 358, 378
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	14, 358, 378
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	4 cut(s)	133, 308, 487, 531
XspI	CTAG	2 cut(s)	252, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.