RLG00000002795

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009161
Physical Location & Seq
Forward (+)
40001676 .. 40004719
3044 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002795

Sequence Viewer

Length: 1152 bp
ATGGCTCAGAGCCAAGTATCAGAAGCCGACCCAGAAGAGCTAAAGAAGCTCATGTGCTCCTACCTCGGCCTGAGCCTGAGCATGTTCCTAGCCCTAGCCCCCCACAAGTTCCAGGAGCTACAGCTCCAAGTCCGCGAGCTCTCCAAGCGGCTCTGGCAGGCGGAGGAGCAGGTCAGGCAGATGAGATCGAGGAGAAAAGAAGACTCCAAGGCCAACGCCAGGGTGGTGGAGATCTTCGCCAGCCACCGGAACTCGTGGCAGGCCGAGGAGAAGCGGCTGCTGAGCCAGATCGACGCGGCGGAGCGAGAAATGGCGAGTCTGAATTCCAGGGTTGAGGAGTTGGAGAAGAGCCGGGACGATTCGGAGTCGAGGATTTGTGAATTGGAGAGGGAGGTCGGGGAGAGGGATGATATGATTGGGTTTATGGCGACTAGAGGAGGCGAGGCGGAGCAGCAGGGGCAGTGTCAGCAGGTCAAGGACGTCAGTGTGTATGATAATGCCTATGCGTTTGGGTTTGACTCCGAATTGGTGGCCGAGGCTTCCAAGCTCTGGCAGGATGTACAGTATGAATCCCTTGAACCATTGTATCATACAAAGCATTTTGTACCAAGGGAGTCCCCATGGAAGGTTGATGGTGAATCGACTGTGGTATCCTCTAAACTTAAAGTCCTTGAACAGGAACTACTGAATTTGGAAAATATTGGAAGGGGTGATCTTTCTAAAGTACCTTCATTAATGAGGAAGCAGACAAAGAGGTATCAAGCTCTTGCGGGGAAGATAGATGATCTATGCCGAAGAATGGCTAGTGATCCCTGTGAAGCCACGGTAAGTCCTGAGTTTCGTACGCAAAGACAAACAGAATTTTTACTCGAATCATTTAGACTTCAGCAACGTGCATCAGACACTGCACAGAAGCTGATGGCAGTGCAAACTGAGATCGGGAAAAGTTATTATGGGGATGAGCTGGGAAACCAGGCCAAACTAACGATGAGACGGTCTTTGGACTCAATTAGAAACAATTTCAGAGAGCTTCAAAGGAATTTGGAGGTATGGTTGGCCAGAATTACTGGAGATCTTGAGGGAATTCTTGCCAGAGACGGTGCTTCTCGTGTAAGGGAATATTATGTATCTAGATATCCTTTTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

384

Amino Acids

44.24

Weight (kDa)

5.62

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
Acc36I ACCTGC 2 cut(s) 160, 460
AccB7I CCANNNNNTGG 1 cut(s) 549
AccII CGCG 2 cut(s) 135, 296
AciI CCGC 8 cut(s) 133, 148, 161, 274, 296, 299, 446, 770
AclWI GGATC 1 cut(s) 803
AcoI YGGCCR 2 cut(s) 531, 1056
AcsI RAATTY 5 cut(s) 322, 688, 860, 1039, 1083
AcuI CTGAAG 1 cut(s) 869
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 4 cut(s) 561, 606, 726, 844
AfiI CCNNNNNNNGG 6 cut(s) 219, 246, 549, 625, 676, 799
AgsI TTSAA 4 cut(s) 578, 674, 1034, 1148
AjnI CCWGG 4 cut(s) 111, 218, 326, 972
Alw21I GWGCWC 2 cut(s) 59, 141
Alw26I GTCTC 2 cut(s) 985, 1089
AlwI GGATC 1 cut(s) 803
AlwNI CAGNNNCTG 2 cut(s) 905, 916
AoxI GGCC 6 cut(s) 67, 210, 261, 531, 975, 1056
ApeKI GCWGC 2 cut(s) 277, 451
ApoI RAATTY 5 cut(s) 322, 688, 860, 1039, 1083
AseI ATTAAT 1 cut(s) 734
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 647, 722
BaeI ACNNNNGTAYC 4 cut(s) 569, 602, 633, 666
BalI TGGCCA 1 cut(s) 1058
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 2 cut(s) 253, 1107
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 59, 141
BbvI GCAGC 2 cut(s) 264, 463
BccI CCATC 2 cut(s) 626, 913
BciT130I CCWGG 4 cut(s) 113, 220, 328, 974
BciVI GTATCC 1 cut(s) 661
BcnI CCSGG 1 cut(s) 353
BcoDI GTCTC 2 cut(s) 985, 1089
BfaI CTAG 5 cut(s) 89, 95, 432, 804, 1131
BfmI CTRYAG 1 cut(s) 119
BfuAI ACCTGC 2 cut(s) 160, 460
BfuI GTATCC 1 cut(s) 661
BglII AGATCT 2 cut(s) 231, 1072
BisI GCNGC 5 cut(s) 149, 275, 278, 297, 452
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 5 cut(s) 150, 276, 279, 298, 453
Bme1390I CCNGG 5 cut(s) 113, 220, 328, 353, 974
BmrFI CCNGG 5 cut(s) 113, 220, 328, 353, 974
BmsI GCATC 1 cut(s) 905
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 1089
Bpu10I CCTNAGC 2 cut(s) 71, 77
Bpu1102I GCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 1097
BpuMI CCSGG 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 9 cut(s) 64, 207, 219, 264, 327, 534, 608, 620, 822
BsaWI WCCGGW 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 1037, 1067
Bsc4I CCNNNNNNNGG 6 cut(s) 219, 246, 549, 625, 676, 799
Bse1I ACTGG 1 cut(s) 1072
BseBI CCWGG 4 cut(s) 113, 220, 328, 974
BseDI CCNNGG 9 cut(s) 64, 207, 219, 264, 327, 534, 608, 620, 822
BseGI GGATG 3 cut(s) 412, 562, 964
BseLI CCNNNNNNNGG 6 cut(s) 219, 246, 549, 625, 676, 799
BseMII CTCAG 6 cut(s) 20, 62, 68, 272, 825, 924
BseNI ACTGG 1 cut(s) 1072
BseRI GAGGAG 5 cut(s) 179, 205, 281, 350, 450
BseXI GCAGC 2 cut(s) 264, 463
BseYI CCCAGC 1 cut(s) 964
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 2 cut(s) 135, 296
BshFI GGCC 6 cut(s) 69, 212, 263, 533, 977, 1058
BsiHKAI GWGCWC 2 cut(s) 59, 141
BsiSI CCGG 2 cut(s) 247, 352
BsiWI CGTACG 1 cut(s) 842
BslFI GGGAC 2 cut(s) 368, 601
BslI CCNNNNNNNGG 6 cut(s) 219, 246, 549, 625, 676, 799
BsmAI GTCTC 2 cut(s) 985, 1089
BsmBI CGTCTC 2 cut(s) 985, 1089
BsmFI GGGAC 2 cut(s) 368, 601
BsnI GGCC 6 cut(s) 69, 212, 263, 533, 977, 1058
Bsp1286I GDGCHC 2 cut(s) 59, 141
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 620
BspACI CCGC 8 cut(s) 133, 148, 161, 274, 296, 299, 446, 770
BspANI GGCC 6 cut(s) 69, 212, 263, 533, 977, 1058
BspCNI CTCAG 6 cut(s) 19, 63, 69, 273, 826, 925
BspFNI CGCG 2 cut(s) 135, 296
BspMI ACCTGC 2 cut(s) 160, 460
BspPI GGATC 1 cut(s) 803
BspQI GCTCTTC 2 cut(s) 30, 341
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 1 cut(s) 1072
BssECI CCNNGG 9 cut(s) 64, 207, 219, 264, 327, 534, 608, 620, 822
BssMI GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
BssNI GRCGYC 1 cut(s) 480
BssSI CACGAG 2 cut(s) 253, 1107
BssT1I CCWWGG 3 cut(s) 207, 608, 620
Bst2BI CACGAG 2 cut(s) 253, 1107
Bst2UI CCWGG 4 cut(s) 113, 220, 328, 974
Bst4CI ACNGT 5 cut(s) 564, 646, 826, 996, 1100
Bst6I CTCTTC 2 cut(s) 30, 341
BstACI GRCGYC 1 cut(s) 480
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 4 cut(s) 137, 159, 241, 261
BstDEI CTNAG 6 cut(s) 6, 71, 77, 281, 834, 933
BstDSI CCRYGG 2 cut(s) 620, 822
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 3 cut(s) 412, 562, 964
BstFNI CGCG 2 cut(s) 135, 296
BstKTI GATC 8 cut(s) 188, 234, 291, 715, 787, 811, 939, 1075
BstMAI GTCTC 2 cut(s) 985, 1089
BstMBI GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
BstMWI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 457, 466
BstNI CCWGG 4 cut(s) 113, 220, 328, 974
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 5 cut(s) 111, 218, 326, 351, 972
BstSFI CTRYAG 1 cut(s) 119
BstUI CGCG 2 cut(s) 135, 296
BstV1I GCAGC 2 cut(s) 264, 463
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 231, 1072
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 2 cut(s) 231, 1072
BsuI GTATCC 1 cut(s) 661
BsuRI GGCC 6 cut(s) 69, 212, 263, 533, 977, 1058
BtgI CCRYGG 2 cut(s) 620, 822
BtsCI GGATG 3 cut(s) 412, 562, 964
BtsI GCAGTG 3 cut(s) 467, 903, 930
BtsIMutI CAGTG 4 cut(s) 467, 490, 903, 930
BveI ACCTGC 2 cut(s) 160, 460
Cac8I GCNNGC 4 cut(s) 137, 159, 241, 261
CaiI CAGNNNCTG 2 cut(s) 905, 916
CseI GACGC 1 cut(s) 302
Csp6I GTAC 4 cut(s) 560, 605, 725, 843
CviAII CATG 3 cut(s) 52, 82, 621
CviQI GTAC 4 cut(s) 560, 605, 725, 843
DdeI CTNAG 6 cut(s) 6, 71, 77, 281, 834, 933
DpnI GATC 8 cut(s) 187, 233, 290, 714, 786, 810, 938, 1074
DpnII GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
EaeI YGGCCR 2 cut(s) 531, 1056
Eam1104I CTCTTC 2 cut(s) 30, 341
EarI CTCTTC 2 cut(s) 30, 341
EciI GGCGGA 3 cut(s) 176, 314, 461
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 207, 608, 620
Eco24I GRGCYC 1 cut(s) 141
Eco32I GATATC 1 cut(s) 1136
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 869
EcoICRI GAGCTC 1 cut(s) 139
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoRI GAATTC 2 cut(s) 322, 1083
EcoRII CCWGG 4 cut(s) 111, 218, 326, 972
EcoRV GATATC 1 cut(s) 1136
EcoT14I CCWWGG 3 cut(s) 207, 608, 620
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 3 cut(s) 207, 608, 620
Esp3I CGTCTC 2 cut(s) 985, 1089
FaeI CATG 3 cut(s) 55, 85, 624
FaqI GGGAC 2 cut(s) 368, 601
FatI CATG 3 cut(s) 51, 81, 620
FauI CCCGC 1 cut(s) 763
Fnu4HI GCNGC 5 cut(s) 149, 275, 278, 297, 452
FokI GGATG 3 cut(s) 419, 569, 971
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 5 cut(s) 149, 275, 278, 297, 452
FspBI CTAG 5 cut(s) 89, 95, 432, 804, 1131
GluI GCNGC 5 cut(s) 149, 275, 278, 297, 452
GsaI CCCAGC 1 cut(s) 968
GsuI CTGGAG 1 cut(s) 1089
HaeIII GGCC 6 cut(s) 69, 212, 263, 533, 977, 1058
HapII CCGG 2 cut(s) 247, 352
HgaI GACGC 1 cut(s) 302
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 3 cut(s) 55, 85, 624
HpaII CCGG 2 cut(s) 247, 352
HphI GGTGA 2 cut(s) 647, 722
Hpy188I TCNGA 7 cut(s) 9, 22, 321, 364, 523, 901, 1025
Hpy188III TCNNGA 4 cut(s) 833, 940, 1076, 1131
Hpy99I CGWCG 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 619, 699, 738
HpyCH4III ACNGT 5 cut(s) 564, 646, 826, 996, 1100
HpyCH4IV ACGT 2 cut(s) 480, 892
HpyCH4V TGCA 3 cut(s) 896, 908, 928
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 457, 466
HpyF3I CTNAG 6 cut(s) 6, 71, 77, 281, 834, 933
HpySE526I ACGT 2 cut(s) 480, 892
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 3 cut(s) 55, 85, 624
Kzo9I GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
LguI GCTCTTC 2 cut(s) 30, 341
LmnI GCTCC 6 cut(s) 62, 115, 129, 166, 301, 448
Lsp1109I GCAGC 2 cut(s) 264, 463
LweI GCATC 1 cut(s) 905
MaeI CTAG 5 cut(s) 89, 95, 432, 804, 1131
MaeII ACGT 2 cut(s) 480, 892
MalI GATC 8 cut(s) 187, 233, 290, 714, 786, 810, 938, 1074
MboI GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
MboII GAAGA 6 cut(s) 47, 212, 226, 358, 787, 807
MflI RGATCY 2 cut(s) 231, 1072
MhlI GDGCHC 2 cut(s) 59, 141
MlsI TGGCCA 1 cut(s) 1058
MluNI TGGCCA 1 cut(s) 1058
MlyI GAGTC 6 cut(s) 197, 325, 374, 512, 623, 998
MmeI TCCRAC 1 cut(s) 321
Mox20I TGGCCA 1 cut(s) 1058
MscI TGGCCA 1 cut(s) 1058
MseI TTAA 2 cut(s) 663, 734
Msp20I TGGCCA 1 cut(s) 1058
MspI CCGG 2 cut(s) 247, 352
MspR9I CCNGG 5 cut(s) 113, 220, 328, 353, 974
MvaI CCWGG 4 cut(s) 113, 220, 328, 974
MvnI CGCG 2 cut(s) 135, 296
MwoI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 457, 466
NciI CCSGG 1 cut(s) 353
NcoI CCATGG 1 cut(s) 620
NdeII GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
NlaIII CATG 3 cut(s) 55, 85, 624
NmeAIII GCCGAG 3 cut(s) 45, 289, 559
NspI RCATGY 1 cut(s) 85
PciSI GCTCTTC 2 cut(s) 30, 341
PfeI GAWTC 4 cut(s) 359, 569, 638, 872
Pfl23II CGTACG 1 cut(s) 842
PflMI CCANNNNNTGG 1 cut(s) 549
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 5 cut(s) 150, 276, 279, 298, 453
PleI GAGTC 6 cut(s) 197, 324, 373, 512, 622, 998
PpsI GAGTC 6 cut(s) 197, 324, 373, 512, 622, 998
PshBI ATTAAT 1 cut(s) 734
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 4 cut(s) 111, 218, 326, 972
PspFI CCCAGC 1 cut(s) 964
PspGI CCWGG 4 cut(s) 111, 218, 326, 972
PspLI CGTACG 1 cut(s) 842
PsrI GAACNNNNNNTAC 2 cut(s) 666, 698
PstNI CAGNNNCTG 2 cut(s) 905, 916
PsuI RGATCY 2 cut(s) 231, 1072
RsaI GTAC 4 cut(s) 561, 606, 726, 844
RsaNI GTAC 4 cut(s) 560, 605, 725, 843
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 2 cut(s) 30, 341
SaqAI TTAA 2 cut(s) 663, 734
SatI GCNGC 5 cut(s) 149, 275, 278, 297, 452
Sau3AI GATC 8 cut(s) 185, 231, 288, 712, 784, 808, 936, 1072
SchI GAGTC 6 cut(s) 197, 325, 374, 512, 623, 998
ScrFI CCNGG 5 cut(s) 113, 220, 328, 353, 974
SduI GDGCHC 2 cut(s) 59, 141
SfaNI GCATC 1 cut(s) 905
SfcI CTRYAG 1 cut(s) 119
SmlI CTYRAG 1 cut(s) 1076
SmoI CTYRAG 1 cut(s) 1076
SsiI CCGC 8 cut(s) 133, 148, 161, 274, 296, 299, 446, 770
SspI AATATT 2 cut(s) 700, 1121
SspMI CTAG 5 cut(s) 89, 95, 432, 804, 1131
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 111, 218, 326, 351, 972
StyI CCWWGG 3 cut(s) 207, 608, 620
TaaI ACNGT 5 cut(s) 564, 646, 826, 996, 1100
TaiI ACGT 2 cut(s) 483, 895
TaqI TCGA 5 cut(s) 188, 291, 368, 641, 870
TatI WGTACW 1 cut(s) 559
TauI GCSGC 3 cut(s) 151, 277, 299
TfiI GAWTC 4 cut(s) 359, 569, 638, 872
Tru1I TTAA 2 cut(s) 663, 734
Tru9I TTAA 2 cut(s) 663, 734
TscAI CASTG 4 cut(s) 467, 490, 910, 930
TseI GCWGC 2 cut(s) 277, 451
TspDTI ATGAA 2 cut(s) 582, 720
TspRI CASTG 4 cut(s) 467, 490, 910, 930
Van91I CCANNNNNTGG 1 cut(s) 549
VspI ATTAAT 1 cut(s) 734
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 5 cut(s) 322, 688, 860, 1039, 1083
XbaI TCTAGA 1 cut(s) 1130
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XspI CTAG 5 cut(s) 89, 95, 432, 804, 1131
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.