Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0009161

Physical Location & Seq

Genomic Coordinates Reverse (-)

450032 .. 451065

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1002200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGCATTTTGTACTAAGGGAGTCGCCTTGGAAGCTAGATGGTGAGTCGACAAGAATATCCTCTAAGCTAAAATTACTTGAACTGGAATTACTGAATTTGGAAACTGTTGGAAAGAATGATATTTCAAAGTTACCTTCATTGATGAGGAAGCAGGCCAAGAGGTATCAAGCTCTTGCGGGGAAGATTGATGATCTGTGCAGAAGAATGCAAGGCAGTGATCCCTCCGAACCTACACTCAGTCCAGAGTTTCGTACGCAACGACAAACAGAATTTTTACTCGAATCATTTAGACTTCAACAACGTGCGACAGAAACTGGACAGAAGTTGATGGCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.06

Weight (kDa)

9.61

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45900
fragaria_vesca	FvH4_5g24100 FvH4_5g24100
malus_domestica	MD00G1002200.v1.1 MD06G1017100.v1.1
prunus_persica	Prupe.5G019400_v2.0.a1 Prupe.5G019400_v2.0.a1
pyrus_communis	pycom06g01380 pycom16g25530
rosa_chinensis	RchiOBHm_Chr7g0213631
rosa_laevigata	RLG00000002795
rosa_multiflora	Rmu_co8487661.1_g000001 Rmu_sc0008101.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245730
rosa_rugosa	Rorug07G0143500 Rorug07G0143600
rosa_samantha	Rh7AG276600 Rh7BG270800 Rh7CG295600 Rh7DG282800
rosa_wichuraiana	Rw0G023510 Rw7G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	97, 272
AfaI	GTAC	2 cut(s)	15, 256
AgsI	TTSAA	3 cut(s)	83, 129, 299
AluBI	AGCT	3 cut(s)	37, 70, 173
AluI	AGCT	3 cut(s)	37, 70, 173
AlwI	GGATC	1 cut(s)	215
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	97, 272
AsuHPI	GGTGA	1 cut(s)	56
BccI	CCATC	2 cut(s)	35, 325
BfaI	CTAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	90, 322
BseDI	CCNNGG	1 cut(s)	29
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	90, 322
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	158
BsiWI	CGTACG	1 cut(s)	254
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	158
Bsp143I	GATC	2 cut(s)	193, 220
BspACI	CCGC	1 cut(s)	179
BspANI	GGCC	1 cut(s)	158
BspCNI	CTCAG	1 cut(s)	252
BspPI	GGATC	1 cut(s)	215
BsrI	ACTGG	2 cut(s)	90, 322
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	193, 220
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	3 cut(s)	17, 66, 239
BstKTI	GATC	2 cut(s)	196, 223
BstMBI	GATC	2 cut(s)	193, 220
BstMWI	GCNNNNNNNGC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	156
CaiI	CAGNNNCTG	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	14, 255
CviJI	RGCY	4 cut(s)	37, 70, 158, 173
CviKI_1	RGCY	4 cut(s)	37, 70, 158, 173
CviQI	GTAC	2 cut(s)	14, 255
DdeI	CTNAG	3 cut(s)	17, 66, 239
DpnI	GATC	2 cut(s)	195, 222
DpnII	GATC	2 cut(s)	193, 220
Eco130I	CCWWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaiI	YATR	1 cut(s)	340
FauI	CCCGC	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	23, 47, 284
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	1 cut(s)	51
Hpy188I	TCNGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	147
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	304
HpyCH4V	TGCA	2 cut(s)	201, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	34
HpyF3I	CTNAG	3 cut(s)	17, 66, 239
HpySE526I	ACGT	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	193, 220
LpnPI	CCDG	4 cut(s)	71, 140, 258, 303
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	304
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	195, 222
MboI	GATC	2 cut(s)	193, 220
MboII	GAAGA	2 cut(s)	196, 216
MluCI	AATT	4 cut(s)	74, 89, 97, 272
MlyI	GAGTC	2 cut(s)	32, 56
MmeI	TCCRAC	1 cut(s)	91
MnlI	CCTC	4 cut(s)	73, 141, 156, 235
Mva1269I	GAATGC	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	34
NdeII	GATC	2 cut(s)	193, 220
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	284
Pfl23II	CGTACG	1 cut(s)	254
PleI	GAGTC	2 cut(s)	31, 55
PpsI	GAGTC	2 cut(s)	31, 55
PspLI	CGTACG	1 cut(s)	254
PsrI	GAACNNNNNNTAC	2 cut(s)	75, 107
PstNI	CAGNNNCTG	1 cut(s)	317
RsaI	GTAC	2 cut(s)	15, 256
RsaNI	GTAC	2 cut(s)	14, 255
SalI	GTCGAC	1 cut(s)	49
Sau3AI	GATC	2 cut(s)	193, 220
SchI	GAGTC	2 cut(s)	32, 56
SetI	ASST	7 cut(s)	39, 72, 139, 167, 175, 235, 307
Sse9I	AATT	4 cut(s)	74, 89, 97, 272
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	38
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	50, 282
TasI	AATT	4 cut(s)	74, 89, 97, 272
TatI	WGTACW	1 cut(s)	13
TfiI	GAWTC	1 cut(s)	284
TscAI	CASTG	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	17, 129
TspRI	CASTG	1 cut(s)	223
XapI	RAATTY	2 cut(s)	97, 272
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.