Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0009161

Physical Location & Seq

Genomic Coordinates Reverse (-)

30609125 .. 30612397

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG282800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTCAGAGCCAAGTATCAGAAGCCGACGCAGAAGAGCTAAAGAAGCTCATGTGCTCCTACCTCGGCCTGAGCCTGAGCATGTTCCTAGCCCTAGCCCCCCACAAGTTCCAGGAGCTACAGCTCCAAGTCCGCGAGCTCTCCAAGCGGCTCTGGCAGGCGGAAGAGCAGGTCAGGCAGATGAGATCGAGGAGGAAAGAAGACTCCAAGGCCAACGCCAGGGTGGTGGAGATCTTCGCCAGCCACCGCAACTCGTGGCAGGCCGAGGAGAAGCGGCTGCTGAGCCAGATCGACGCGGCGGAGCGAGAAATGGCGAGCCTGAATGCGAGGGTCGAGGAGTTGGAGAAGAGCCGGGACGATTCGGAGTCGAGGATTTGTGAATTGGAGAGGGAGGTCGGGGAGAGGGATGATATGATTGGGTTTATGGCGACTAGAGGAGGCGAGGCGGAGCAGCAGGGACAGTGTCAGCAGGTCAAGGATGTCAGTGTGTATGACAATAATGCCTATGCGTTCGGGTTTGACTCCGAATTGGTGGCCGAGGCTTCCAAGCTCTGGCAGGATGTACAGTATGAATCCCTTGAACCATTGTATCATACGAAGCATTTTGTGCCAAGGGAGTCCCCATGGAAGGTTGATGGTGAATCGACTGTAGTATCCTCTAAACTTAAATTACTTGAACAGGAACTACTGAATTTGGAAAATATTGGAAAGGGTGATCTTTCTAAAGTACCTTCATTAATGAGGAAGCAGACAAAGAGGTATCAAGCTCTTGCGGGGAAGATAGATGATCTATGCCGAAGAATGGTAATTTTTAGCACCCTTATGTTACTTTTTTATGCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

281

Amino Acids

32.38

Weight (kDa)

5.4

Isoelectric Point (pI)

52.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45900
fragaria_vesca	FvH4_5g24100 FvH4_5g24100
malus_domestica	MD00G1002200.v1.1 MD06G1017100.v1.1
prunus_persica	Prupe.5G019400_v2.0.a1 Prupe.5G019400_v2.0.a1
pyrus_communis	pycom06g01380 pycom16g25530
rosa_chinensis	RchiOBHm_Chr7g0213631
rosa_laevigata	RLG00000002795
rosa_multiflora	Rmu_co8487661.1_g000001 Rmu_sc0008101.1_g000009
rosa_roxburghii	Rroxscaffold_3G00245730
rosa_rugosa	Rorug07G0143500 Rorug07G0143600
rosa_samantha	Rh7AG276600 Rh7BG270800 Rh7CG295600 Rh7DG282800
rosa_wichuraiana	Rw0G023510 Rw7G023870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	160, 460
AccB7I	CCANNNNNTGG	1 cut(s)	552
AccII	CGCG	2 cut(s)	135, 296
AciI	CCGC	9 cut(s)	133, 148, 161, 247, 274, 296, 299, 446, 773
AcoI	YGGCCR	1 cut(s)	534
AcsI	RAATTY	1 cut(s)	691
AfaI	GTAC	2 cut(s)	564, 729
AfiI	CCNNNNNNNGG	4 cut(s)	219, 552, 628, 802
AgsI	TTSAA	2 cut(s)	581, 677
AjnI	CCWGG	2 cut(s)	111, 218
AluBI	AGCT	7 cut(s)	40, 49, 118, 124, 139, 550, 767
AluI	AGCT	7 cut(s)	40, 49, 118, 124, 139, 550, 767
Alw21I	GWGCWC	2 cut(s)	59, 141
AoxI	GGCC	4 cut(s)	67, 210, 261, 534
ApeKI	GCWGC	2 cut(s)	277, 451
ApoI	RAATTY	1 cut(s)	691
AseI	ATTAAT	1 cut(s)	737
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	650, 725
BaeI	ACNNNNGTAYC	4 cut(s)	572, 605, 636, 669
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	59, 141
BbvI	GCAGC	2 cut(s)	264, 463
BccI	CCATC	1 cut(s)	629
BciT130I	CCWGG	2 cut(s)	113, 220
BciVI	GTATCC	1 cut(s)	664
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	3 cut(s)	89, 95, 432
BfmI	CTRYAG	2 cut(s)	119, 648
BfuAI	ACCTGC	2 cut(s)	160, 460
BfuI	GTATCC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	5 cut(s)	150, 276, 279, 298, 453
Bme1390I	CCNGG	3 cut(s)	113, 220, 353
BmrFI	CCNGG	3 cut(s)	113, 220, 353
BpiI	GAAGAC	1 cut(s)	207
Bpu10I	CCTNAGC	2 cut(s)	71, 77
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	219, 552, 628, 802
BseBI	CCWGG	2 cut(s)	113, 220
BseDI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
BseGI	GGATG	3 cut(s)	412, 484, 565
BseLI	CCNNNNNNNGG	4 cut(s)	219, 552, 628, 802
BseMII	CTCAG	4 cut(s)	20, 62, 68, 272
BseRI	GAGGAG	4 cut(s)	205, 281, 350, 450
BseXI	GCAGC	2 cut(s)	264, 463
Bsh1236I	CGCG	2 cut(s)	135, 296
BshFI	GGCC	4 cut(s)	69, 212, 263, 536
BsiHKAI	GWGCWC	2 cut(s)	59, 141
BsiSI	CCGG	1 cut(s)	352
BslFI	GGGAC	3 cut(s)	368, 471, 604
BslI	CCNNNNNNNGG	4 cut(s)	219, 552, 628, 802
BsmFI	GGGAC	3 cut(s)	368, 471, 604
BsmI	GAATGC	1 cut(s)	328
BsnI	GGCC	4 cut(s)	69, 212, 263, 536
Bsp1286I	GDGCHC	2 cut(s)	59, 141
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	5 cut(s)	185, 231, 288, 715, 787
Bsp1720I	GCTNAGC	1 cut(s)	281
Bsp19I	CCATGG	1 cut(s)	623
BspACI	CCGC	9 cut(s)	133, 148, 161, 247, 274, 296, 299, 446, 773
BspANI	GGCC	4 cut(s)	69, 212, 263, 536
BspCNI	CTCAG	4 cut(s)	19, 63, 69, 273
BspFNI	CGCG	2 cut(s)	135, 296
BspMI	ACCTGC	2 cut(s)	160, 460
BspQI	GCTCTTC	3 cut(s)	30, 159, 341
BsrGI	TGTACA	1 cut(s)	562
BssECI	CCNNGG	7 cut(s)	64, 207, 219, 264, 537, 611, 623
BssMI	GATC	5 cut(s)	185, 231, 288, 715, 787
BssSI	CACGAG	1 cut(s)	253
BssT1I	CCWWGG	3 cut(s)	207, 611, 623
Bst2BI	CACGAG	1 cut(s)	253
Bst2UI	CCWGG	2 cut(s)	113, 220
Bst4CI	ACNGT	3 cut(s)	462, 567, 649
Bst6I	CTCTTC	3 cut(s)	30, 159, 341
BstAPI	GCANNNNNTGC	1 cut(s)	607
BstAUI	TGTACA	1 cut(s)	562
BstC8I	GCNNGC	5 cut(s)	137, 159, 241, 261, 316
BstDEI	CTNAG	4 cut(s)	6, 71, 77, 281
BstDSI	CCRYGG	1 cut(s)	623
BstF5I	GGATG	3 cut(s)	412, 484, 565
BstFNI	CGCG	2 cut(s)	135, 296
BstKTI	GATC	5 cut(s)	188, 234, 291, 718, 790
BstMBI	GATC	5 cut(s)	185, 231, 288, 715, 787
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
BstNI	CCWGG	2 cut(s)	113, 220
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	3 cut(s)	111, 218, 351
BstSFI	CTRYAG	2 cut(s)	119, 648
BstUI	CGCG	2 cut(s)	135, 296
BstV1I	GCAGC	2 cut(s)	264, 463
BstV2I	GAAGAC	1 cut(s)	207
BstX2I	RGATCY	1 cut(s)	231
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	664
BsuRI	GGCC	4 cut(s)	69, 212, 263, 536
BtgI	CCRYGG	1 cut(s)	623
BtsCI	GGATG	3 cut(s)	412, 484, 565
BtsIMutI	CAGTG	2 cut(s)	467, 490
BveI	ACCTGC	2 cut(s)	160, 460
Cac8I	GCNNGC	5 cut(s)	137, 159, 241, 261, 316
CseI	GACGC	2 cut(s)	38, 302
Csp6I	GTAC	2 cut(s)	563, 728
CviAII	CATG	3 cut(s)	52, 82, 624
CviQI	GTAC	2 cut(s)	563, 728
DdeI	CTNAG	4 cut(s)	6, 71, 77, 281
DpnI	GATC	5 cut(s)	187, 233, 290, 717, 789
DpnII	GATC	5 cut(s)	185, 231, 288, 715, 787
EaeI	YGGCCR	1 cut(s)	534
Eam1104I	CTCTTC	3 cut(s)	30, 159, 341
EarI	CTCTTC	3 cut(s)	30, 159, 341
EciI	GGCGGA	3 cut(s)	176, 314, 461
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	3 cut(s)	207, 611, 623
Eco24I	GRGCYC	1 cut(s)	141
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	111, 218
EcoT14I	CCWWGG	3 cut(s)	207, 611, 623
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	3 cut(s)	207, 611, 623
FaeI	CATG	3 cut(s)	55, 85, 627
FaqI	GGGAC	3 cut(s)	368, 471, 604
FatI	CATG	3 cut(s)	51, 81, 623
FauI	CCCGC	1 cut(s)	766
Fnu4HI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
FokI	GGATG	3 cut(s)	419, 491, 572
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
FspBI	CTAG	3 cut(s)	89, 95, 432
GluI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
HaeIII	GGCC	4 cut(s)	69, 212, 263, 536
HapII	CCGG	1 cut(s)	352
HgaI	GACGC	2 cut(s)	38, 302
Hin1II	CATG	3 cut(s)	55, 85, 627
HinfI	GANTC	7 cut(s)	203, 359, 365, 521, 572, 617, 641
HpaII	CCGG	1 cut(s)	352
HphI	GGTGA	2 cut(s)	650, 725
Hpy188I	TCNGA	4 cut(s)	9, 22, 364, 526
Hpy99I	CGWCG	2 cut(s)	32, 296
HpyAV	CCTTC	2 cut(s)	622, 741
HpyCH4III	ACNGT	3 cut(s)	462, 567, 649
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
HpyF3I	CTNAG	4 cut(s)	6, 71, 77, 281
Hsp92II	CATG	3 cut(s)	55, 85, 627
Kzo9I	GATC	5 cut(s)	185, 231, 288, 715, 787
LguI	GCTCTTC	3 cut(s)	30, 159, 341
LmnI	GCTCC	5 cut(s)	62, 115, 129, 301, 448
Lsp1109I	GCAGC	2 cut(s)	264, 463
MaeI	CTAG	3 cut(s)	89, 95, 432
MaeIII	GTNAC	1 cut(s)	825
MalI	GATC	5 cut(s)	187, 233, 290, 717, 789
MboI	GATC	5 cut(s)	185, 231, 288, 715, 787
MboII	GAAGA	7 cut(s)	47, 176, 212, 226, 358, 790, 810
MflI	RGATCY	1 cut(s)	231
MhlI	GDGCHC	2 cut(s)	59, 141
MluCI	AATT	5 cut(s)	380, 527, 668, 691, 807
MlyI	GAGTC	4 cut(s)	197, 374, 515, 626
MmeI	TCCRAC	1 cut(s)	321
MseI	TTAA	2 cut(s)	666, 737
MslI	CAYNNNNRTG	1 cut(s)	821
MspI	CCGG	1 cut(s)	352
MspR9I	CCNGG	3 cut(s)	113, 220, 353
Mva1269I	GAATGC	1 cut(s)	328
MvaI	CCWGG	2 cut(s)	113, 220
MvnI	CGCG	2 cut(s)	135, 296
MwoI	GCNNNNNNNGC	5 cut(s)	46, 145, 154, 175, 607
NciI	CCSGG	1 cut(s)	353
NcoI	CCATGG	1 cut(s)	623
NdeII	GATC	5 cut(s)	185, 231, 288, 715, 787
NlaIII	CATG	3 cut(s)	55, 85, 627
NmeAIII	GCCGAG	3 cut(s)	45, 289, 562
NspI	RCATGY	1 cut(s)	85
PciSI	GCTCTTC	3 cut(s)	30, 159, 341
PctI	GAATGC	1 cut(s)	328
PfeI	GAWTC	3 cut(s)	359, 572, 641
PflFI	GACNNNGTC	1 cut(s)	462
PflMI	CCANNNNNTGG	1 cut(s)	552
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	5 cut(s)	150, 276, 279, 298, 453
PleI	GAGTC	4 cut(s)	197, 373, 515, 625
PpsI	GAGTC	4 cut(s)	197, 373, 515, 625
PshBI	ATTAAT	1 cut(s)	737
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	2 cut(s)	111, 218
PspGI	CCWGG	2 cut(s)	111, 218
PsrI	GAACNNNNNNTAC	2 cut(s)	669, 701
PsuI	RGATCY	1 cut(s)	231
PsyI	GACNNNGTC	1 cut(s)	462
RsaI	GTAC	2 cut(s)	564, 729
RsaNI	GTAC	2 cut(s)	563, 728
RseI	CAYNNNNRTG	1 cut(s)	821
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	3 cut(s)	30, 159, 341
SaqAI	TTAA	2 cut(s)	666, 737
SatI	GCNGC	5 cut(s)	149, 275, 278, 297, 452
Sau3AI	GATC	5 cut(s)	185, 231, 288, 715, 787
SchI	GAGTC	4 cut(s)	197, 374, 515, 626
ScrFI	CCNGG	3 cut(s)	113, 220, 353
SduI	GDGCHC	2 cut(s)	59, 141
SfcI	CTRYAG	2 cut(s)	119, 648
SmiMI	CAYNNNNRTG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	380, 527, 668, 691, 807
SsiI	CCGC	9 cut(s)	133, 148, 161, 247, 274, 296, 299, 446, 773
SspI	AATATT	1 cut(s)	703
SspMI	CTAG	3 cut(s)	89, 95, 432
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	111, 218, 351
StyI	CCWWGG	3 cut(s)	207, 611, 623
TaaI	ACNGT	3 cut(s)	462, 567, 649
TaqI	TCGA	5 cut(s)	188, 291, 333, 368, 644
TasI	AATT	5 cut(s)	380, 527, 668, 691, 807
TatI	WGTACW	1 cut(s)	562
TauI	GCSGC	3 cut(s)	151, 277, 299
TfiI	GAWTC	3 cut(s)	359, 572, 641
Tru1I	TTAA	2 cut(s)	666, 737
Tru9I	TTAA	2 cut(s)	666, 737
TscAI	CASTG	2 cut(s)	467, 490
TseI	GCWGC	2 cut(s)	277, 451
TspDTI	ATGAA	2 cut(s)	585, 723
TspRI	CASTG	2 cut(s)	467, 490
Tth111I	GACNNNGTC	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	552
VspI	ATTAAT	1 cut(s)	737
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	3 cut(s)	89, 95, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.