Rmu_sc0008101.1_g000009

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008101.1
Physical Location & Seq
Reverse (-)
23291 .. 26319
3029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008101.1_g000009.1.cds

Sequence Viewer

Length: 1164 bp
atggctcagagccaagtatcagaagccgacgcagaagagctaaagaagctcatgtgctcctacctcggcctgagcctgagcatgttcctagccctagccccccacaagttccaggagctacagctccaagcccgcgagctctccaagcggctctggcaggcggaagagcaggtcaggcagatgagatcgaggagaaaagaagactccaaggccaacgcccgggtggtggagatcttcgccagccaccgcaactcgtggcaggccgaggagaagcggctgctgagccagatcgacgcggcggagcgagaaatggcgagcctgaatgcgagggtcgaggagttggagaagagccgggacgattcggagtcgaggatttgtgaattggagagggaggtcggggagagggatgatatgattgggtttatggcgactagaggaggcgacgcggagcagcagggacagtgtcagcaggtcaaggacgtcagtgtgtatgacaataatgcctatgcgtttgggtttgactccgaattggtggccgaggcttccaagctctggcaggatgtacagtgtgaatcccttgaaccattgtatcatacgaagcattttgtgccaagggagtccccatggaaggttgatggtgaatcgactgtagtatcctctaaacttaaattgcttgaacaggaactactgaatttggaaaatattggaaagggtgatctttctaaagtaccttcattaatgaggaagcagacaaagaggtatcaagctcttgcggggaagatagatgatctatgccgaagaatgcaggctagtgatccctgtgaagccacagtaagtcctgagtttcgtacgcaaagacaaacagaatttttactcgaatcatttagacttcagcaacgtgcatcagacactgcacagaagctgatggcagtgcaaactgagatcgggaaaagttattatggggatgagctggggaaccaggccaaacttacgatgagacggtctttggactccattagaaacaatttcagagaacttcaaaggaatttggagatatggttggccagaattactggagatcttgagggaattcttgccagagacggtgcttctcgtgtaagggagatcgatgcaggaccactgtgtttggccaacctagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

44.19

Weight (kDa)

5.42

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
Acc36I ACCTGC 2 cut(s) 160, 460
AccB7I CCANNNNNTGG 1 cut(s) 552
AccII CGCG 3 cut(s) 135, 296, 446
AciI CCGC 9 cut(s) 133, 148, 161, 247, 274, 296, 299, 446, 773
AclWI GGATC 1 cut(s) 809
AcoI YGGCCR 3 cut(s) 534, 1062, 1149
AcsI RAATTY 4 cut(s) 691, 866, 1045, 1089
AcuI CTGAAG 1 cut(s) 875
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 3 cut(s) 564, 729, 850
AfiI CCNNNNNNNGG 4 cut(s) 219, 226, 552, 628
AgsI TTSAA 3 cut(s) 581, 677, 1040
AjnI CCWGG 2 cut(s) 111, 978
Alw21I GWGCWC 2 cut(s) 59, 141
Alw26I GTCTC 2 cut(s) 991, 1095
AlwI GGATC 1 cut(s) 809
AlwNI CAGNNNCTG 2 cut(s) 911, 922
Ama87I CYCGRG 1 cut(s) 219
AoxI GGCC 7 cut(s) 67, 210, 261, 534, 981, 1062, 1149
ApeKI GCWGC 2 cut(s) 277, 451
ApoI RAATTY 4 cut(s) 691, 866, 1045, 1089
AseI ATTAAT 1 cut(s) 737
AspS9I GGNCC 1 cut(s) 1136
AsuC2I CCSGG 3 cut(s) 220, 221, 353
AsuHPI GGTGA 2 cut(s) 650, 725
AvaI CYCGRG 1 cut(s) 219
AvaII GGWCC 1 cut(s) 1136
BaeI ACNNNNGTAYC 4 cut(s) 572, 605, 636, 669
BalI TGGCCA 2 cut(s) 1064, 1151
BanII GRGCYC 1 cut(s) 141
BauI CACGAG 2 cut(s) 253, 1113
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 59, 141
BbvI GCAGC 2 cut(s) 264, 463
BccI CCATC 2 cut(s) 629, 919
BciT130I CCWGG 2 cut(s) 113, 980
BciVI GTATCC 1 cut(s) 664
BcnI CCSGG 3 cut(s) 220, 221, 353
BcoDI GTCTC 2 cut(s) 991, 1095
BfaI CTAG 5 cut(s) 89, 95, 432, 810, 1157
BfmI CTRYAG 2 cut(s) 119, 648
BfuAI ACCTGC 2 cut(s) 160, 460
BfuI GTATCC 1 cut(s) 664
BglII AGATCT 2 cut(s) 231, 1078
BisI GCNGC 5 cut(s) 149, 275, 278, 297, 452
BlpI GCTNAGC 1 cut(s) 281
BlsI GCNGC 5 cut(s) 150, 276, 279, 298, 453
Bme1390I CCNGG 5 cut(s) 113, 220, 221, 353, 980
Bme18I GGWCC 1 cut(s) 1136
BmeT110I CYCGRG 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 1136
BmiI GGNNCC 1 cut(s) 977
BmrFI CCNGG 5 cut(s) 113, 220, 221, 353, 980
BmsI GCATC 2 cut(s) 911, 1120
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 2 cut(s) 71, 77
Bpu1102I GCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 3 cut(s) 220, 221, 353
Bsa29I ATCGAT 1 cut(s) 1128
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 7 cut(s) 64, 207, 219, 264, 537, 611, 623
BsaXI ACNNNNNCTCC 2 cut(s) 1043, 1073
Bsc4I CCNNNNNNNGG 4 cut(s) 219, 226, 552, 628
Bse1I ACTGG 1 cut(s) 1078
BseBI CCWGG 2 cut(s) 113, 980
BseCI ATCGAT 1 cut(s) 1128
BseDI CCNNGG 7 cut(s) 64, 207, 219, 264, 537, 611, 623
BseGI GGATG 3 cut(s) 412, 565, 970
BseLI CCNNNNNNNGG 4 cut(s) 219, 226, 552, 628
BseMII CTCAG 6 cut(s) 20, 62, 68, 272, 831, 930
BseNI ACTGG 1 cut(s) 1078
BseRI GAGGAG 4 cut(s) 205, 281, 350, 450
BseXI GCAGC 2 cut(s) 264, 463
BseYI CCCAGC 1 cut(s) 970
BsgI GTGCAG 1 cut(s) 897
Bsh1236I CGCG 3 cut(s) 135, 296, 446
BshFI GGCC 7 cut(s) 69, 212, 263, 536, 983, 1064, 1151
BshVI ATCGAT 1 cut(s) 1128
BsiHKAI GWGCWC 2 cut(s) 59, 141
BsiHKCI CYCGRG 1 cut(s) 219
BsiSI CCGG 2 cut(s) 220, 352
BsiWI CGTACG 1 cut(s) 848
BslFI GGGAC 3 cut(s) 368, 471, 604
BslI CCNNNNNNNGG 4 cut(s) 219, 226, 552, 628
BsmAI GTCTC 2 cut(s) 991, 1095
BsmBI CGTCTC 2 cut(s) 991, 1095
BsmFI GGGAC 3 cut(s) 368, 471, 604
BsmI GAATGC 2 cut(s) 328, 807
BsnI GGCC 7 cut(s) 69, 212, 263, 536, 983, 1064, 1151
BsoBI CYCGRG 1 cut(s) 219
Bsp1286I GDGCHC 2 cut(s) 59, 141
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
Bsp1720I GCTNAGC 1 cut(s) 281
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 9 cut(s) 133, 148, 161, 247, 274, 296, 299, 446, 773
BspANI GGCC 7 cut(s) 69, 212, 263, 536, 983, 1064, 1151
BspCNI CTCAG 6 cut(s) 19, 63, 69, 273, 832, 931
BspDI ATCGAT 1 cut(s) 1128
BspFNI CGCG 3 cut(s) 135, 296, 446
BspLI GGNNCC 1 cut(s) 977
BspMI ACCTGC 2 cut(s) 160, 460
BspPI GGATC 1 cut(s) 809
BspQI GCTCTTC 3 cut(s) 30, 159, 341
BsrGI TGTACA 1 cut(s) 562
BsrI ACTGG 1 cut(s) 1078
BssECI CCNNGG 7 cut(s) 64, 207, 219, 264, 537, 611, 623
BssMI GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
BssNI GRCGYC 1 cut(s) 480
BssSI CACGAG 2 cut(s) 253, 1113
BssT1I CCWWGG 3 cut(s) 207, 611, 623
Bst2BI CACGAG 2 cut(s) 253, 1113
Bst2UI CCWGG 2 cut(s) 113, 980
Bst4CI ACNGT 7 cut(s) 462, 567, 649, 832, 1002, 1106, 1143
Bst6I CTCTTC 3 cut(s) 30, 159, 341
BstACI GRCGYC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 607
BstAUI TGTACA 1 cut(s) 562
BstC8I GCNNGC 7 cut(s) 133, 137, 159, 241, 261, 316, 807
BstDEI CTNAG 7 cut(s) 6, 71, 77, 281, 840, 939, 1161
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 3 cut(s) 412, 565, 970
BstFNI CGCG 3 cut(s) 135, 296, 446
BstKTI GATC 9 cut(s) 188, 234, 291, 718, 790, 817, 945, 1081, 1128
BstMAI GTCTC 2 cut(s) 991, 1095
BstMBI GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
BstMWI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 607, 1157
BstNI CCWGG 2 cut(s) 113, 980
BstNSI RCATGY 1 cut(s) 85
BstSCI CCNGG 5 cut(s) 111, 218, 219, 351, 978
BstSFI CTRYAG 2 cut(s) 119, 648
BstUI CGCG 3 cut(s) 135, 296, 446
BstV1I GCAGC 2 cut(s) 264, 463
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 231, 1078
BstYI RGATCY 2 cut(s) 231, 1078
Bsu15I ATCGAT 1 cut(s) 1128
BsuI GTATCC 1 cut(s) 664
BsuRI GGCC 7 cut(s) 69, 212, 263, 536, 983, 1064, 1151
BsuTUI ATCGAT 1 cut(s) 1128
BtgI CCRYGG 1 cut(s) 623
BtsCI GGATG 3 cut(s) 412, 565, 970
BtsI GCAGTG 2 cut(s) 909, 936
BtsIMutI CAGTG 6 cut(s) 467, 490, 572, 909, 936, 1139
BveI ACCTGC 2 cut(s) 160, 460
Cac8I GCNNGC 7 cut(s) 133, 137, 159, 241, 261, 316, 807
CaiI CAGNNNCTG 2 cut(s) 911, 922
Cfr13I GGNCC 1 cut(s) 1136
Cfr9I CCCGGG 1 cut(s) 219
ClaI ATCGAT 1 cut(s) 1128
CseI GACGC 3 cut(s) 38, 302, 452
Csp6I GTAC 3 cut(s) 563, 728, 849
CspCI CAANNNNNGTGG 2 cut(s) 1128, 1163
CviAII CATG 3 cut(s) 52, 82, 624
CviQI GTAC 3 cut(s) 563, 728, 849
DdeI CTNAG 7 cut(s) 6, 71, 77, 281, 840, 939, 1161
DpnI GATC 9 cut(s) 187, 233, 290, 717, 789, 816, 944, 1080, 1127
DpnII GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
EaeI YGGCCR 3 cut(s) 534, 1062, 1149
Eam1104I CTCTTC 3 cut(s) 30, 159, 341
EarI CTCTTC 3 cut(s) 30, 159, 341
EciI GGCGGA 2 cut(s) 176, 314
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 3 cut(s) 207, 611, 623
Eco24I GRGCYC 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 1136
Eco53kI GAGCTC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 875
Eco88I CYCGRG 1 cut(s) 219
EcoICRI GAGCTC 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 1089
EcoRII CCWGG 2 cut(s) 111, 978
EcoT14I CCWWGG 3 cut(s) 207, 611, 623
EcoT38I GRGCYC 1 cut(s) 141
ErhI CCWWGG 3 cut(s) 207, 611, 623
Esp3I CGTCTC 2 cut(s) 991, 1095
FaeI CATG 3 cut(s) 55, 85, 627
FaqI GGGAC 3 cut(s) 368, 471, 604
FatI CATG 3 cut(s) 51, 81, 623
FauI CCCGC 2 cut(s) 140, 766
Fnu4HI GCNGC 5 cut(s) 149, 275, 278, 297, 452
FokI GGATG 3 cut(s) 419, 572, 977
FriOI GRGCYC 1 cut(s) 141
Fsp4HI GCNGC 5 cut(s) 149, 275, 278, 297, 452
FspBI CTAG 5 cut(s) 89, 95, 432, 810, 1157
GluI GCNGC 5 cut(s) 149, 275, 278, 297, 452
GsaI CCCAGC 1 cut(s) 974
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 7 cut(s) 69, 212, 263, 536, 983, 1064, 1151
HapII CCGG 2 cut(s) 220, 352
HgaI GACGC 3 cut(s) 38, 302, 452
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 3 cut(s) 55, 85, 627
HinfI GANTC 9 cut(s) 203, 359, 365, 521, 572, 617, 641, 878, 1010
HpaII CCGG 2 cut(s) 220, 352
HphI GGTGA 2 cut(s) 650, 725
Hpy188I TCNGA 6 cut(s) 9, 22, 364, 526, 907, 1031
Hpy188III TCNNGA 3 cut(s) 839, 946, 1082
Hpy99I CGWCG 3 cut(s) 32, 296, 446
HpyAV CCTTC 2 cut(s) 622, 741
HpyCH4III ACNGT 7 cut(s) 462, 567, 649, 832, 1002, 1106, 1143
HpyCH4IV ACGT 2 cut(s) 480, 898
HpyCH4V TGCA 5 cut(s) 805, 902, 914, 934, 1133
HpyF10VI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 607, 1157
HpyF3I CTNAG 7 cut(s) 6, 71, 77, 281, 840, 939, 1161
HpySE526I ACGT 2 cut(s) 480, 898
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 3 cut(s) 55, 85, 627
Kzo9I GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
LguI GCTCTTC 3 cut(s) 30, 159, 341
LmnI GCTCC 5 cut(s) 62, 115, 129, 301, 448
Lsp1109I GCAGC 2 cut(s) 264, 463
LweI GCATC 2 cut(s) 911, 1120
MaeI CTAG 5 cut(s) 89, 95, 432, 810, 1157
MaeII ACGT 2 cut(s) 480, 898
MalI GATC 9 cut(s) 187, 233, 290, 717, 789, 816, 944, 1080, 1127
MboI GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
MboII GAAGA 7 cut(s) 47, 176, 212, 226, 358, 790, 810
MflI RGATCY 2 cut(s) 231, 1078
MhlI GDGCHC 2 cut(s) 59, 141
MlsI TGGCCA 2 cut(s) 1064, 1151
MluCI AATT 9 cut(s) 380, 527, 668, 691, 866, 1024, 1045, 1068, 1089
MluNI TGGCCA 2 cut(s) 1064, 1151
MlyI GAGTC 5 cut(s) 197, 374, 515, 626, 1004
MmeI TCCRAC 1 cut(s) 321
Mox20I TGGCCA 2 cut(s) 1064, 1151
MscI TGGCCA 2 cut(s) 1064, 1151
MseI TTAA 2 cut(s) 666, 737
Msp20I TGGCCA 2 cut(s) 1064, 1151
MspI CCGG 2 cut(s) 220, 352
MspR9I CCNGG 5 cut(s) 113, 220, 221, 353, 980
Mva1269I GAATGC 2 cut(s) 328, 807
MvaI CCWGG 2 cut(s) 113, 980
MvnI CGCG 3 cut(s) 135, 296, 446
MwoI GCNNNNNNNGC 6 cut(s) 46, 145, 154, 175, 607, 1157
NciI CCSGG 3 cut(s) 220, 221, 353
NcoI CCATGG 1 cut(s) 623
NdeII GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
NlaIII CATG 3 cut(s) 55, 85, 627
NlaIV GGNNCC 1 cut(s) 977
NmeAIII GCCGAG 3 cut(s) 45, 289, 562
NspI RCATGY 1 cut(s) 85
PciSI GCTCTTC 3 cut(s) 30, 159, 341
PctI GAATGC 2 cut(s) 328, 807
PfeI GAWTC 4 cut(s) 359, 572, 641, 878
Pfl23II CGTACG 1 cut(s) 848
PflFI GACNNNGTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 552
PfoI TCCNGGA 1 cut(s) 111
PkrI GCNGC 5 cut(s) 150, 276, 279, 298, 453
PleI GAGTC 5 cut(s) 197, 373, 515, 625, 1004
PpsI GAGTC 5 cut(s) 197, 373, 515, 625, 1004
PshBI ATTAAT 1 cut(s) 737
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 111, 978
PspFI CCCAGC 1 cut(s) 970
PspGI CCWGG 2 cut(s) 111, 978
PspLI CGTACG 1 cut(s) 848
PspN4I GGNNCC 1 cut(s) 977
PspPI GGNCC 1 cut(s) 1136
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PstNI CAGNNNCTG 2 cut(s) 911, 922
PsuI RGATCY 2 cut(s) 231, 1078
PsyI GACNNNGTC 1 cut(s) 462
RsaI GTAC 3 cut(s) 564, 729, 850
RsaNI GTAC 3 cut(s) 563, 728, 849
SacI GAGCTC 1 cut(s) 141
SapI GCTCTTC 3 cut(s) 30, 159, 341
SaqAI TTAA 2 cut(s) 666, 737
SatI GCNGC 5 cut(s) 149, 275, 278, 297, 452
Sau3AI GATC 9 cut(s) 185, 231, 288, 715, 787, 814, 942, 1078, 1125
Sau96I GGNCC 1 cut(s) 1136
SchI GAGTC 5 cut(s) 197, 374, 515, 626, 1004
ScrFI CCNGG 5 cut(s) 113, 220, 221, 353, 980
SduI GDGCHC 2 cut(s) 59, 141
SfaNI GCATC 2 cut(s) 911, 1120
SfcI CTRYAG 2 cut(s) 119, 648
SinI GGWCC 1 cut(s) 1136
SmaI CCCGGG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 9 cut(s) 380, 527, 668, 691, 866, 1024, 1045, 1068, 1089
SsiI CCGC 9 cut(s) 133, 148, 161, 247, 274, 296, 299, 446, 773
SspI AATATT 1 cut(s) 703
SspMI CTAG 5 cut(s) 89, 95, 432, 810, 1157
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 5 cut(s) 111, 218, 219, 351, 978
StyI CCWWGG 3 cut(s) 207, 611, 623
TaaI ACNGT 7 cut(s) 462, 567, 649, 832, 1002, 1106, 1143
TaiI ACGT 2 cut(s) 483, 901
TaqI TCGA 7 cut(s) 188, 291, 333, 368, 644, 876, 1128
TasI AATT 9 cut(s) 380, 527, 668, 691, 866, 1024, 1045, 1068, 1089
TatI WGTACW 1 cut(s) 562
TauI GCSGC 3 cut(s) 151, 277, 299
TfiI GAWTC 4 cut(s) 359, 572, 641, 878
Tru1I TTAA 2 cut(s) 666, 737
Tru9I TTAA 2 cut(s) 666, 737
TscAI CASTG 6 cut(s) 467, 490, 572, 916, 936, 1146
TseI GCWGC 2 cut(s) 277, 451
TspDTI ATGAA 1 cut(s) 723
TspMI CCCGGG 1 cut(s) 219
TspRI CASTG 6 cut(s) 467, 490, 572, 916, 936, 1146
Tth111I GACNNNGTC 1 cut(s) 462
Van91I CCANNNNNTGG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 1136
VspI ATTAAT 1 cut(s) 737
XapI RAATTY 4 cut(s) 691, 866, 1045, 1089
XceI RCATGY 1 cut(s) 85
XcmI CCANNNNNNNNNTGG 1 cut(s) 220
XmaI CCCGGG 1 cut(s) 219
XspI CTAG 5 cut(s) 89, 95, 432, 810, 1157
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.