Rh7BG270800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0009161
Physical Location & Seq
Reverse (-)
24868074 .. 24871023
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG270800.1

Sequence Viewer

Length: 1167 bp
ATGGCTCAGAGCCAAGTACCAGAACCCCAACTAGAAGCCGACCCAGAAGAGCTAAAGAAGCTCATGTGCTCCTACCTCGGCCTGAGCCTGAGCATGTTCCTAGCCCTAGCCCCCCACAAGTTCCAGGAGCTACAGCTCCAAGTCCGCGAGCTCTCCAAGCGGCTCTGGCAGGCGGAAGAGCAGGTCAGGCAGATGAGATCGAGGAGAAAAGAAGACTCCAAGGCCAACGCCAGGGTGGTGGAGATCTTCGCCAGCCACCGGAACTCGTGGCAGGCCGAGGAGAAGCGGCTGCTGAGCCAGATCGACGCGGCGGAGCGGGAAATGGCGAGCCTGAATGCGAGGGTTGAGGAGTTGGAGAAGAGCCGGGACGATTCGGAGTCGAGGATTTGTGAATTGGAGAGGGAGGTCGGGGAGAGGGATGATATGATTGGGTTTATGGCGACTAGAGGAGGCGAGGCGGAGCAGCAGGGACAGTGTCAGCAGGTCAAGGACGTCAATGTGTATGACAATGCCTATGCCTTTGGGTTTGACTCCGAATTGGTGGCCCAGGCTTCCAAGCTCTGGCAGGATGTACAGTATGAATCCCTTGAACCATTGTATCATACGAAGCATTTTGTGCCAAGGGAGTCCCCATGGAAGGTTGATGGTGAATCGACTGTAGTATCCTCTAAACTTAAATTACTTGAACAGGAACTACTGAATTTGGAAAATATTGGAAAGGGTGATCTTTCTAAAGTACCTTCATTAATGAGGAAGCAGACAAAGAGGTATCAAGCTCTTGCGGGGAAGATAGATGATCTATGCCGAAGAATGCAGGCTAGTGATCCCTGTGAAGCCACAGTAAGTCCTGAGTTTCGTACGCAAAGACAAACAGAATTTTTACTCGAATCATTTAGACTTCAGCAACGTGCATCAGACACTGCACAGAAGCTGATGGCAGTGCAAACTGAGATCGGGAAAAGTTATTATGGGGATGAGCTGGGGAACCAGGCCAAACTTACGATGAGACGGTCTTTGGACTCCATTAGAAACAATTTCAGAGAACTTCAAAGGAATTTGGAGATATGGTTGGCCAGAATTACTGGAGATCTTGAGGGAATTCTTGCCAGAGACGGTGCTTCTCGTGTAAGGGAATATTATGTAGCTAGATATCCTTTTGTTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

44.84

Weight (kDa)

5.62

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
Acc36I ACCTGC 2 cut(s) 172, 472
AccB7I CCANNNNNTGG 1 cut(s) 561
AccBSI CCGCTC 1 cut(s) 316
AccII CGCG 2 cut(s) 147, 308
AciI CCGC 9 cut(s) 145, 160, 173, 286, 308, 311, 316, 458, 782
AclWI GGATC 1 cut(s) 818
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 4 cut(s) 700, 875, 1054, 1098
AcuI CTGAAG 1 cut(s) 884
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 4 cut(s) 18, 573, 738, 859
AfiI CCNNNNNNNGG 4 cut(s) 231, 258, 561, 637
AgsI TTSAA 4 cut(s) 590, 686, 1049, 1163
AjnI CCWGG 4 cut(s) 123, 230, 546, 987
Alw21I GWGCWC 2 cut(s) 71, 153
Alw26I GTCTC 2 cut(s) 1000, 1104
AlwI GGATC 1 cut(s) 818
AlwNI CAGNNNCTG 2 cut(s) 920, 931
AoxI GGCC 6 cut(s) 79, 222, 273, 543, 990, 1071
ApeKI GCWGC 2 cut(s) 289, 463
ApoI RAATTY 4 cut(s) 700, 875, 1054, 1098
AseI ATTAAT 1 cut(s) 746
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 365
AsuHPI GGTGA 2 cut(s) 659, 734
BaeI ACNNNNGTAYC 4 cut(s) 581, 614, 645, 678
BalI TGGCCA 1 cut(s) 1073
BanII GRGCYC 1 cut(s) 153
BauI CACGAG 2 cut(s) 265, 1122
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 71, 153
BbvI GCAGC 2 cut(s) 276, 475
BccI CCATC 2 cut(s) 638, 928
BciT130I CCWGG 4 cut(s) 125, 232, 548, 989
BciVI GTATCC 1 cut(s) 673
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 2 cut(s) 1000, 1104
BfaI CTAG 6 cut(s) 32, 101, 107, 444, 819, 1146
BfmI CTRYAG 2 cut(s) 131, 657
BfuAI ACCTGC 2 cut(s) 172, 472
BfuI GTATCC 1 cut(s) 673
BglII AGATCT 2 cut(s) 243, 1087
BisI GCNGC 5 cut(s) 161, 287, 290, 309, 464
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 5 cut(s) 162, 288, 291, 310, 465
Bme1390I CCNGG 5 cut(s) 125, 232, 365, 548, 989
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 986
BmrFI CCNGG 5 cut(s) 125, 232, 365, 548, 989
BmsI GCATC 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 1104
Bpu10I CCTNAGC 2 cut(s) 83, 89
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 1112
BpuMI CCSGG 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 492
BsaJI CCNNGG 7 cut(s) 76, 219, 231, 276, 546, 620, 632
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 1052, 1082
Bsc4I CCNNNNNNNGG 4 cut(s) 231, 258, 561, 637
Bse1I ACTGG 1 cut(s) 1087
BseBI CCWGG 4 cut(s) 125, 232, 548, 989
BseDI CCNNGG 7 cut(s) 76, 219, 231, 276, 546, 620, 632
BseGI GGATG 3 cut(s) 424, 574, 979
BseLI CCNNNNNNNGG 4 cut(s) 231, 258, 561, 637
BseMII CTCAG 6 cut(s) 20, 74, 80, 284, 840, 939
BseNI ACTGG 1 cut(s) 1087
BseRI GAGGAG 4 cut(s) 217, 293, 362, 462
BseXI GCAGC 2 cut(s) 276, 475
BseYI CCCAGC 1 cut(s) 979
BsgI GTGCAG 1 cut(s) 906
Bsh1236I CGCG 2 cut(s) 147, 308
BshFI GGCC 6 cut(s) 81, 224, 275, 545, 992, 1073
BsiHKAI GWGCWC 2 cut(s) 71, 153
BsiSI CCGG 2 cut(s) 259, 364
BsiWI CGTACG 1 cut(s) 857
BslFI GGGAC 3 cut(s) 380, 483, 613
BslI CCNNNNNNNGG 4 cut(s) 231, 258, 561, 637
BsmAI GTCTC 2 cut(s) 1000, 1104
BsmBI CGTCTC 2 cut(s) 1000, 1104
BsmFI GGGAC 3 cut(s) 380, 483, 613
BsmI GAATGC 2 cut(s) 340, 816
BsnI GGCC 6 cut(s) 81, 224, 275, 545, 992, 1073
Bsp1286I GDGCHC 2 cut(s) 71, 153
Bsp1407I TGTACA 1 cut(s) 571
Bsp143I GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
Bsp1720I GCTNAGC 1 cut(s) 293
Bsp19I CCATGG 1 cut(s) 632
BspACI CCGC 9 cut(s) 145, 160, 173, 286, 308, 311, 316, 458, 782
BspANI GGCC 6 cut(s) 81, 224, 275, 545, 992, 1073
BspCNI CTCAG 6 cut(s) 19, 75, 81, 285, 841, 940
BspFNI CGCG 2 cut(s) 147, 308
BspLI GGNNCC 1 cut(s) 986
BspMI ACCTGC 2 cut(s) 172, 472
BspPI GGATC 1 cut(s) 818
BspQI GCTCTTC 3 cut(s) 42, 171, 353
BsrBI CCGCTC 1 cut(s) 316
BsrGI TGTACA 1 cut(s) 571
BsrI ACTGG 1 cut(s) 1087
BssECI CCNNGG 7 cut(s) 76, 219, 231, 276, 546, 620, 632
BssMI GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
BssNI GRCGYC 1 cut(s) 492
BssSI CACGAG 2 cut(s) 265, 1122
BssT1I CCWWGG 3 cut(s) 219, 620, 632
Bst2BI CACGAG 2 cut(s) 265, 1122
Bst2UI CCWGG 4 cut(s) 125, 232, 548, 989
Bst4CI ACNGT 6 cut(s) 474, 576, 658, 841, 1011, 1115
Bst6I CTCTTC 3 cut(s) 42, 171, 353
BstACI GRCGYC 1 cut(s) 492
BstAPI GCANNNNNTGC 1 cut(s) 616
BstAUI TGTACA 1 cut(s) 571
BstC8I GCNNGC 6 cut(s) 149, 171, 253, 273, 328, 816
BstDEI CTNAG 6 cut(s) 6, 83, 89, 293, 849, 948
BstDSI CCRYGG 1 cut(s) 632
BstF5I GGATG 3 cut(s) 424, 574, 979
BstFNI CGCG 2 cut(s) 147, 308
BstKTI GATC 8 cut(s) 200, 246, 303, 727, 799, 826, 954, 1090
BstMAI GTCTC 2 cut(s) 1000, 1104
BstMBI GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
BstMWI GCNNNNNNNGC 5 cut(s) 58, 157, 166, 187, 616
BstNI CCWGG 4 cut(s) 125, 232, 548, 989
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 5 cut(s) 123, 230, 363, 546, 987
BstSFI CTRYAG 2 cut(s) 131, 657
BstUI CGCG 2 cut(s) 147, 308
BstV1I GCAGC 2 cut(s) 276, 475
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 2 cut(s) 243, 1087
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 2 cut(s) 243, 1087
BsuI GTATCC 1 cut(s) 673
BsuRI GGCC 6 cut(s) 81, 224, 275, 545, 992, 1073
BtgI CCRYGG 1 cut(s) 632
BtsCI GGATG 3 cut(s) 424, 574, 979
BtsI GCAGTG 2 cut(s) 918, 945
BtsIMutI CAGTG 3 cut(s) 479, 918, 945
BveI ACCTGC 2 cut(s) 172, 472
Cac8I GCNNGC 6 cut(s) 149, 171, 253, 273, 328, 816
CaiI CAGNNNCTG 2 cut(s) 920, 931
Cfr13I GGNCC 1 cut(s) 544
CseI GACGC 1 cut(s) 314
Csp6I GTAC 4 cut(s) 17, 572, 737, 858
CviAII CATG 3 cut(s) 64, 94, 633
CviQI GTAC 4 cut(s) 17, 572, 737, 858
DdeI CTNAG 6 cut(s) 6, 83, 89, 293, 849, 948
DpnI GATC 8 cut(s) 199, 245, 302, 726, 798, 825, 953, 1089
DpnII GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 3 cut(s) 42, 171, 353
EarI CTCTTC 3 cut(s) 42, 171, 353
EciI GGCGGA 3 cut(s) 188, 326, 473
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 3 cut(s) 219, 620, 632
Eco24I GRGCYC 1 cut(s) 153
Eco32I GATATC 1 cut(s) 1151
Eco53kI GAGCTC 1 cut(s) 151
Eco57I CTGAAG 1 cut(s) 884
EcoICRI GAGCTC 1 cut(s) 151
EcoRI GAATTC 1 cut(s) 1098
EcoRII CCWGG 4 cut(s) 123, 230, 546, 987
EcoRV GATATC 1 cut(s) 1151
EcoT14I CCWWGG 3 cut(s) 219, 620, 632
EcoT38I GRGCYC 1 cut(s) 153
ErhI CCWWGG 3 cut(s) 219, 620, 632
Esp3I CGTCTC 2 cut(s) 1000, 1104
FaeI CATG 3 cut(s) 67, 97, 636
FaqI GGGAC 3 cut(s) 380, 483, 613
FatI CATG 3 cut(s) 63, 93, 632
FauI CCCGC 2 cut(s) 309, 775
Fnu4HI GCNGC 5 cut(s) 161, 287, 290, 309, 464
FokI GGATG 3 cut(s) 431, 581, 986
FriOI GRGCYC 1 cut(s) 153
Fsp4HI GCNGC 5 cut(s) 161, 287, 290, 309, 464
FspBI CTAG 6 cut(s) 32, 101, 107, 444, 819, 1146
GluI GCNGC 5 cut(s) 161, 287, 290, 309, 464
GsaI CCCAGC 1 cut(s) 983
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 6 cut(s) 81, 224, 275, 545, 992, 1073
HapII CCGG 2 cut(s) 259, 364
HgaI GACGC 1 cut(s) 314
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 3 cut(s) 67, 97, 636
HinfI GANTC 9 cut(s) 215, 371, 377, 530, 581, 626, 650, 887, 1019
HpaII CCGG 2 cut(s) 259, 364
HphI GGTGA 2 cut(s) 659, 734
Hpy188I TCNGA 5 cut(s) 9, 376, 535, 916, 1040
Hpy188III TCNNGA 3 cut(s) 848, 955, 1091
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 631, 750
HpyCH4III ACNGT 6 cut(s) 474, 576, 658, 841, 1011, 1115
HpyCH4IV ACGT 2 cut(s) 492, 907
HpyCH4V TGCA 4 cut(s) 814, 911, 923, 943
HpyF10VI GCNNNNNNNGC 5 cut(s) 58, 157, 166, 187, 616
HpyF3I CTNAG 6 cut(s) 6, 83, 89, 293, 849, 948
HpySE526I ACGT 2 cut(s) 492, 907
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 3 cut(s) 67, 97, 636
Kzo9I GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
LguI GCTCTTC 3 cut(s) 42, 171, 353
LmnI GCTCC 5 cut(s) 74, 127, 141, 313, 460
Lsp1109I GCAGC 2 cut(s) 276, 475
LweI GCATC 1 cut(s) 920
MaeI CTAG 6 cut(s) 32, 101, 107, 444, 819, 1146
MaeII ACGT 2 cut(s) 492, 907
MalI GATC 8 cut(s) 199, 245, 302, 726, 798, 825, 953, 1089
MbiI CCGCTC 1 cut(s) 316
MboI GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
MboII GAAGA 7 cut(s) 59, 188, 224, 238, 370, 799, 819
MflI RGATCY 2 cut(s) 243, 1087
MhlI GDGCHC 2 cut(s) 71, 153
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 9 cut(s) 392, 536, 677, 700, 875, 1033, 1054, 1077, 1098
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 5 cut(s) 209, 386, 524, 635, 1013
MmeI TCCRAC 1 cut(s) 333
Mox20I TGGCCA 1 cut(s) 1073
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 2 cut(s) 675, 746
Msp20I TGGCCA 1 cut(s) 1073
MspI CCGG 2 cut(s) 259, 364
MspR9I CCNGG 5 cut(s) 125, 232, 365, 548, 989
Mva1269I GAATGC 2 cut(s) 340, 816
MvaI CCWGG 4 cut(s) 125, 232, 548, 989
MvnI CGCG 2 cut(s) 147, 308
MwoI GCNNNNNNNGC 5 cut(s) 58, 157, 166, 187, 616
NciI CCSGG 1 cut(s) 365
NcoI CCATGG 1 cut(s) 632
NdeII GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
NlaIII CATG 3 cut(s) 67, 97, 636
NlaIV GGNNCC 1 cut(s) 986
NmeAIII GCCGAG 2 cut(s) 57, 301
NspI RCATGY 1 cut(s) 97
PciSI GCTCTTC 3 cut(s) 42, 171, 353
PctI GAATGC 2 cut(s) 340, 816
PfeI GAWTC 4 cut(s) 371, 581, 650, 887
Pfl23II CGTACG 1 cut(s) 857
PflFI GACNNNGTC 1 cut(s) 474
PflMI CCANNNNNTGG 1 cut(s) 561
PfoI TCCNGGA 1 cut(s) 123
PkrI GCNGC 5 cut(s) 162, 288, 291, 310, 465
PleI GAGTC 5 cut(s) 209, 385, 524, 634, 1013
PpsI GAGTC 5 cut(s) 209, 385, 524, 634, 1013
PshBI ATTAAT 1 cut(s) 746
Psp124BI GAGCTC 1 cut(s) 153
Psp6I CCWGG 4 cut(s) 123, 230, 546, 987
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 4 cut(s) 123, 230, 546, 987
PspLI CGTACG 1 cut(s) 857
PspN4I GGNNCC 1 cut(s) 986
PspPI GGNCC 1 cut(s) 544
PsrI GAACNNNNNNTAC 2 cut(s) 678, 710
PstNI CAGNNNCTG 2 cut(s) 920, 931
PsuI RGATCY 2 cut(s) 243, 1087
PsyI GACNNNGTC 1 cut(s) 474
RsaI GTAC 4 cut(s) 18, 573, 738, 859
RsaNI GTAC 4 cut(s) 17, 572, 737, 858
SacI GAGCTC 1 cut(s) 153
SapI GCTCTTC 3 cut(s) 42, 171, 353
SaqAI TTAA 2 cut(s) 675, 746
SatI GCNGC 5 cut(s) 161, 287, 290, 309, 464
Sau3AI GATC 8 cut(s) 197, 243, 300, 724, 796, 823, 951, 1087
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 5 cut(s) 209, 386, 524, 635, 1013
ScrFI CCNGG 5 cut(s) 125, 232, 365, 548, 989
SduI GDGCHC 2 cut(s) 71, 153
SfaNI GCATC 1 cut(s) 920
SfcI CTRYAG 2 cut(s) 131, 657
SmlI CTYRAG 1 cut(s) 1091
SmoI CTYRAG 1 cut(s) 1091
Sse9I AATT 9 cut(s) 392, 536, 677, 700, 875, 1033, 1054, 1077, 1098
SsiI CCGC 9 cut(s) 145, 160, 173, 286, 308, 311, 316, 458, 782
SspI AATATT 2 cut(s) 712, 1136
SspMI CTAG 6 cut(s) 32, 101, 107, 444, 819, 1146
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 5 cut(s) 123, 230, 363, 546, 987
StyI CCWWGG 3 cut(s) 219, 620, 632
TaaI ACNGT 6 cut(s) 474, 576, 658, 841, 1011, 1115
TaiI ACGT 2 cut(s) 495, 910
TaqI TCGA 5 cut(s) 200, 303, 380, 653, 885
TasI AATT 9 cut(s) 392, 536, 677, 700, 875, 1033, 1054, 1077, 1098
TatI WGTACW 1 cut(s) 571
TauI GCSGC 3 cut(s) 163, 289, 311
TfiI GAWTC 4 cut(s) 371, 581, 650, 887
Tru1I TTAA 2 cut(s) 675, 746
Tru9I TTAA 2 cut(s) 675, 746
TscAI CASTG 3 cut(s) 479, 925, 945
TseI GCWGC 2 cut(s) 289, 463
TspDTI ATGAA 2 cut(s) 594, 732
TspRI CASTG 3 cut(s) 479, 925, 945
Tth111I GACNNNGTC 1 cut(s) 474
Van91I CCANNNNNTGG 1 cut(s) 561
VspI ATTAAT 1 cut(s) 746
XapI RAATTY 4 cut(s) 700, 875, 1054, 1098
XceI RCATGY 1 cut(s) 97
XcmI CCANNNNNNNNNTGG 1 cut(s) 232
XspI CTAG 6 cut(s) 32, 101, 107, 444, 819, 1146
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.