AT3G47720
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007192
Physical Location & Seq
Forward (+)
17592558 .. 17594132
1575 bp
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UTR
Exon/CDS
Intron
AT3G47720.1

Sequence Viewer

Length: 951 bp
ATGGATTATTCAAAAACCGAAGAAACACCGATAAACGAAGAACAAGGGTCAACAAATTCATCTGAAAGCAGAAGCAATGAAGAGTTATTCTCTGATTGTGATCAACAACATTCTTCCATAGCTAACGAGTTCGGACTAACGGAGTTGCCTAAAGACGATAAAGTTTACGAGCTTATCTACCGTCATTGCCAATCTAAGCTAACTTCTCACTTAAGCAATCAGTTTGAGATTGTATCAATTCTCAAGAACGGATTTCAAACACCATTAGGACAAGCTAAGCTTAAAGCCTTTCAAATATACGCTGAGTCTGTTGCAAAGAAAAGCGGCAGCTGCTGTGGAAACAAAGCTGCGGTGGCTGAAGCGGCGAGAGTGAAATACGGTTGTTGCGGTGTGGAGAAGGAAGAGTTAAAAGCGATTCTAATGTATGGATTTAGCAACAATGCCTTATGTCTCTCACCAGACAATGCTCCTCTTCAATGTATGATAGATCCTTCATCATCTTGTAACGAAGACGGGATTAGCTTCTTGCTGTTTTCAAGAATTATTATGGGAAAATCAGAGGTTGTGTGCTCGACATCACAATCGTATCCGAGTTCTATGGAGTTTGATTCAGGTGTAGACAGTTTGACATCTCCAAACAAGTATATTATTTGGAGCACACACATGAACACTCATGTTTTGCCTGAGTTTGTTGTTTGCATCAAAACTCCATCTATCTTGAAAAGAAAAAACCCGAAATCTCCTTGGATTTCGTTTCCGGTCTTAATCAACTCGATATCAAAGTTTCTAAATCAATCGCAAATCCGTCTCATTCATAAACACTATAAAGAACATCAAGATAGGAGAATCTCGCGGTGTGAGTTGATTCAACGCCTGAGAAGTATAACTGGAGATAGCTTATTGGTTCAAATCATCAAATCTGTTGGACAAAAGGTACATAAAGACACATGA

Protein Analysis

316

Amino Acids

35.42

Weight (kDa)

7.52

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 244 - 309 7.3e-26 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 618
AccII CGCG 1 cut(s) 853
AciI CCGC 5 cut(s) 324, 350, 362, 387, 853
AclWI GGATC 1 cut(s) 482
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 378
AfaI GTAC 1 cut(s) 936
AflII CTTAAG 1 cut(s) 211
AgsI TTSAA 8 cut(s) 12, 257, 293, 476, 537, 721, 869, 908
AluBI AGCT 9 cut(s) 122, 172, 199, 275, 280, 330, 347, 522, 897
AluI AGCT 9 cut(s) 122, 172, 199, 275, 280, 330, 347, 522, 897
Alw21I GWGCWC 2 cut(s) 572, 659
Alw26I GTCTC 2 cut(s) 455, 812
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 333
ApeKI GCWGC 3 cut(s) 327, 330, 347
ApoI RAATTY 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 447
BaeI ACNNNNGTAYC 2 cut(s) 569, 602
BbsI GAAGAC 1 cut(s) 516
Bbv12I GWGCWC 2 cut(s) 572, 659
BbvI GCAGC 3 cut(s) 317, 334, 339
BccI CCATC 1 cut(s) 718
BciVI GTATCC 1 cut(s) 597
BclI TGATCA 1 cut(s) 100
BcoDI GTCTC 2 cut(s) 455, 812
BfrI CTTAAG 1 cut(s) 211
BfuI GTATCC 1 cut(s) 597
BisI GCNGC 5 cut(s) 325, 328, 331, 348, 363
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 5 cut(s) 326, 329, 332, 349, 364
BmsI GCATC 1 cut(s) 708
BpiI GAAGAC 1 cut(s) 516
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 1 cut(s) 909
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 743
BsaWI WCCGGW 1 cut(s) 757
Bse1I ACTGG 1 cut(s) 892
Bse3DI GCAATG 2 cut(s) 82, 184
Bse8I GATNNNNATC 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 743
BseJI GATNNNNATC 1 cut(s) 99
BseMI GCAATG 2 cut(s) 82, 184
BseMII CTCAG 3 cut(s) 294, 675, 866
BseNI ACTGG 1 cut(s) 892
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 3 cut(s) 317, 334, 339
Bsh1236I CGCG 1 cut(s) 853
BsiHKAI GWGCWC 2 cut(s) 572, 659
BsiSI CCGG 1 cut(s) 758
BsmAI GTCTC 2 cut(s) 455, 812
BsmBI CGTCTC 1 cut(s) 812
Bsp1286I GDGCHC 2 cut(s) 572, 659
Bsp143I GATC 2 cut(s) 100, 487
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 5 cut(s) 324, 350, 362, 387, 853
BspCNI CTCAG 3 cut(s) 295, 676, 867
BspFNI CGCG 1 cut(s) 853
BspPI GGATC 1 cut(s) 482
BspTI CTTAAG 1 cut(s) 211
BsrDI GCAATG 2 cut(s) 82, 184
BsrI ACTGG 1 cut(s) 892
BssECI CCNNGG 1 cut(s) 743
BssMI GATC 2 cut(s) 100, 487
BssT1I CCWWGG 1 cut(s) 743
Bst4CI ACNGT 3 cut(s) 182, 380, 623
Bst6I CTCTTC 3 cut(s) 75, 396, 477
BstAFI CTTAAG 1 cut(s) 211
BstDEI CTNAG 5 cut(s) 195, 276, 303, 684, 875
BstFNI CGCG 1 cut(s) 853
BstKTI GATC 2 cut(s) 103, 490
BstMAI GTCTC 2 cut(s) 455, 812
BstMBI GATC 2 cut(s) 100, 487
BstMWI GCNNNNNNNGC 3 cut(s) 330, 353, 362
BstUI CGCG 1 cut(s) 853
BstV1I GCAGC 3 cut(s) 317, 334, 339
BstV2I GAAGAC 1 cut(s) 516
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BsuI GTATCC 1 cut(s) 597
CaiI CAGNNNCTG 1 cut(s) 333
Csp6I GTAC 1 cut(s) 935
CviAII CATG 3 cut(s) 664, 674, 948
CviQI GTAC 1 cut(s) 935
DdeI CTNAG 5 cut(s) 195, 276, 303, 684, 875
DpnI GATC 2 cut(s) 102, 489
DpnII GATC 2 cut(s) 100, 487
Eam1104I CTCTTC 3 cut(s) 75, 396, 477
EarI CTCTTC 3 cut(s) 75, 396, 477
Eco130I CCWWGG 1 cut(s) 743
Eco32I GATATC 1 cut(s) 777
Eco57I CTGAAG 1 cut(s) 378
EcoRV GATATC 1 cut(s) 777
EcoT14I CCWWGG 1 cut(s) 743
ErhI CCWWGG 1 cut(s) 743
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 3 cut(s) 667, 677, 951
FalI AAGNNNNNCTT 2 cut(s) 264, 296
FatI CATG 3 cut(s) 663, 673, 947
FbaI TGATCA 1 cut(s) 100
FblI GTMKAC 1 cut(s) 618
Fnu4HI GCNGC 5 cut(s) 325, 328, 331, 348, 363
Fsp4HI GCNGC 5 cut(s) 325, 328, 331, 348, 363
GluI GCNGC 5 cut(s) 325, 328, 331, 348, 363
GsuI CTGGAG 1 cut(s) 909
HapII CCGG 1 cut(s) 758
Hin1II CATG 3 cut(s) 667, 677, 951
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 5 cut(s) 305, 415, 608, 846, 865
HpaII CCGG 1 cut(s) 758
HphI GGTGA 1 cut(s) 447
Hpy166II GTNNAC 3 cut(s) 51, 166, 619
Hpy188I TCNGA 5 cut(s) 64, 94, 134, 559, 591
Hpy188III TCNNGA 4 cut(s) 244, 537, 718, 836
Hpy8I GTNNAC 3 cut(s) 51, 166, 619
HpyAV CCTTC 2 cut(s) 391, 501
HpyCH4III ACNGT 3 cut(s) 182, 380, 623
HpyCH4V TGCA 2 cut(s) 314, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 330, 353, 362
HpyF3I CTNAG 5 cut(s) 195, 276, 303, 684, 875
Hsp92II CATG 3 cut(s) 667, 677, 951
Ksp22I TGATCA 1 cut(s) 100
Kzo9I GATC 2 cut(s) 100, 487
LmnI GCTCC 2 cut(s) 472, 654
LpnPI CCDG 6 cut(s) 471, 597, 696, 771, 873, 887
Lsp1109I GCAGC 3 cut(s) 317, 334, 339
LweI GCATC 1 cut(s) 708
MaeIII GTNAC 1 cut(s) 503
MalI GATC 2 cut(s) 102, 489
MboI GATC 2 cut(s) 100, 487
MboII GAAGA 7 cut(s) 32, 50, 92, 105, 413, 464, 521
MflI RGATCY 1 cut(s) 487
MhlI GDGCHC 2 cut(s) 572, 659
MluCI AATT 3 cut(s) 55, 237, 540
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 904
MnlI CCTC 2 cut(s) 480, 553
MseI TTAA 4 cut(s) 212, 282, 407, 764
MslI CAYNNNNRTG 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 330
MspCI CTTAAG 1 cut(s) 211
MspI CCGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 853
MwoI GCNNNNNNNGC 3 cut(s) 330, 353, 362
NdeII GATC 2 cut(s) 100, 487
NlaIII CATG 3 cut(s) 667, 677, 951
PfeI GAWTC 4 cut(s) 415, 608, 846, 865
PkrI GCNGC 5 cut(s) 326, 329, 332, 349, 364
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PstNI CAGNNNCTG 1 cut(s) 333
PsuI RGATCY 1 cut(s) 487
PvuII CAGCTG 1 cut(s) 330
RsaI GTAC 1 cut(s) 936
RsaNI GTAC 1 cut(s) 935
RseI CAYNNNNRTG 1 cut(s) 662
SaqAI TTAA 4 cut(s) 212, 282, 407, 764
SatI GCNGC 5 cut(s) 325, 328, 331, 348, 363
Sau3AI GATC 2 cut(s) 100, 487
SchI GAGTC 1 cut(s) 314
SduI GDGCHC 2 cut(s) 572, 659
SfaNI GCATC 1 cut(s) 708
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 2 cut(s) 211, 242
SmoI CTYRAG 2 cut(s) 211, 242
Sse9I AATT 3 cut(s) 55, 237, 540
SsiI CCGC 5 cut(s) 324, 350, 362, 387, 853
StyI CCWWGG 1 cut(s) 743
TaaI ACNGT 3 cut(s) 182, 380, 623
TaqI TCGA 2 cut(s) 572, 773
TasI AATT 3 cut(s) 55, 237, 540
TauI GCSGC 2 cut(s) 327, 365
TfiI GAWTC 4 cut(s) 415, 608, 846, 865
Tru1I TTAA 4 cut(s) 212, 282, 407, 764
Tru9I TTAA 4 cut(s) 212, 282, 407, 764
TseI GCWGC 3 cut(s) 327, 330, 347
TspDTI ATGAA 5 cut(s) 48, 93, 483, 680, 803
TspGWI ACGGA 3 cut(s) 155, 264, 794
Vha464I CTTAAG 1 cut(s) 211
XapI RAATTY 1 cut(s) 55
XmiI GTMKAC 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.