Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029611.1

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Reverse (-)

26 .. 607

Gene Structure 582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggaatacagtggtgttcaacgtcctttatcctctgttttcgccgatgggttcacagcctcgctgccgccgcctcagccgcctaacgactgcgaactctccgatcaggtttccgattccgtcaccacagagacgtcctcagggagctccgacgatcaagaatcatctgtctccgattgcgaaagcagcgtcacgagccgcggcggcgacgaccgtcgccgggtgctggacgccgggttagtgaaacttggagaaggggacagagtccacgacctcatcaagcaaaggtttcttgcgagtttgggattgcttggagcgcacgtcaccgttacggcgattaatagaaactcccattcgggttttacgggtcaagcgcggctgcacgcgtttcgggtttacttgaaagctgtggaggacaagtgtggtggaaacgccaatgtgaaatatggttggtattctccgagttcgaaagctgagatttcgaagatcattggccatggatttggtcactgtgaaaagatcaacggggtttatggtagaggtgtctatcttgctcctgatgattcacctttggaatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

193

Amino Acids

20.71

Weight (kDa)

5.47

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	137
AccII	CGCG	3 cut(s)	201, 376, 386
AciI	CCGC	7 cut(s)	68, 71, 80, 199, 201, 204, 376
AcoI	YGGCCR	1 cut(s)	493
AcyI	GRCGYC	2 cut(s)	134, 231
AfiI	CCNNNNNNNGG	2 cut(s)	220, 226
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	2 cut(s)	20, 403
AjiI	CACGTC	1 cut(s)	322
AluBI	AGCT	3 cut(s)	147, 407, 473
AluI	AGCT	3 cut(s)	147, 407, 473
Alw21I	GWGCWC	1 cut(s)	149
Alw26I	GTCTC	2 cut(s)	125, 175
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	3 cut(s)	64, 186, 379
ArsI	GACNNNNNNTTYG	2 cut(s)	174, 206
AseI	ATTAAT	1 cut(s)	339
AspLEI	GCGC	2 cut(s)	319, 376
AsuC2I	CCSGG	2 cut(s)	221, 235
AsuHPI	GGTGA	3 cut(s)	115, 316, 558
AsuII	TTCGAA	2 cut(s)	467, 482
AxyI	CCTNAGG	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	495
BanII	GRGCYC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	193
Bbv12I	GWGCWC	1 cut(s)	149
BbvCI	CCTCAGC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	51, 198, 366
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	348
BcgI	CGANNNNNNTGC	2 cut(s)	371, 405
BcnI	CCSGG	2 cut(s)	221, 235
BcoDI	GTCTC	2 cut(s)	125, 175
BglI	GCCNNNNNGGC	1 cut(s)	204
Bme1390I	CCNGG	2 cut(s)	221, 235
BmgBI	CACGTC	1 cut(s)	322
BmrFI	CCNGG	2 cut(s)	221, 235
BoxI	GACNNNNGTC	1 cut(s)	213
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu10I	CCTNAGC	1 cut(s)	75
Bpu14I	TTCGAA	2 cut(s)	467, 482
BpuMI	CCSGG	2 cut(s)	221, 235
BsaHI	GRCGYC	2 cut(s)	134, 231
BsaJI	CCNNGG	2 cut(s)	199, 496
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 404, 434
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 226
Bse21I	CCTNAGG	1 cut(s)	139
BseDI	CCNNGG	2 cut(s)	199, 496
BseLI	CCNNNNNNNGG	2 cut(s)	220, 226
BseMII	CTCAG	3 cut(s)	89, 153, 465
BseXI	GCAGC	3 cut(s)	51, 198, 366
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	3 cut(s)	201, 376, 386
Bsh1285I	CGRYCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	495
BsiEI	CGRYCG	1 cut(s)	214
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	220, 234
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	220, 226
BsmAI	GTCTC	2 cut(s)	125, 175
BsmBI	CGTCTC	1 cut(s)	125
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	495
Bsp119I	TTCGAA	2 cut(s)	467, 482
Bsp1286I	GDGCHC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	103, 154, 486, 519
Bsp19I	CCATGG	1 cut(s)	496
BspACI	CCGC	7 cut(s)	68, 71, 80, 199, 201, 204, 376
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	3 cut(s)	88, 152, 466
BspFNI	CGCG	3 cut(s)	201, 376, 386
BspT104I	TTCGAA	2 cut(s)	467, 482
BssECI	CCNNGG	2 cut(s)	199, 496
BssMI	GATC	4 cut(s)	103, 154, 486, 519
BssNI	GRCGYC	2 cut(s)	134, 231
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	496
Bst2BI	CACGAG	1 cut(s)	193
Bst4CI	ACNGT	4 cut(s)	11, 215, 328, 512
BstACI	GRCGYC	2 cut(s)	134, 231
BstBI	TTCGAA	2 cut(s)	467, 482
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	3 cut(s)	75, 139, 474
BstDSI	CCRYGG	2 cut(s)	199, 496
BstFNI	CGCG	3 cut(s)	201, 376, 386
BstHHI	GCGC	2 cut(s)	319, 376
BstKTI	GATC	4 cut(s)	106, 157, 489, 522
BstMAI	GTCTC	2 cut(s)	125, 175
BstMBI	GATC	4 cut(s)	103, 154, 486, 519
BstMCI	CGRYCG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	7 cut(s)	70, 76, 79, 186, 195, 204, 316
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	219, 233
BstUI	CGCG	3 cut(s)	201, 376, 386
BstV1I	GCAGC	3 cut(s)	51, 198, 366
BstXI	CCANNNNNNTGG	1 cut(s)	503
Bsu36I	CCTNAGG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	495
BtgI	CCRYGG	2 cut(s)	199, 496
BtrI	CACGTC	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	16, 508
Cac8I	GCNNGC	1 cut(s)	384
CfoI	GCGC	2 cut(s)	319, 376
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	2 cut(s)	178, 239
CspCI	CAANNNNNGTGG	2 cut(s)	406, 441
CviAII	CATG	1 cut(s)	497
CviJI	RGCY	8 cut(s)	59, 79, 147, 198, 379, 407, 473, 495
CviKI_1	RGCY	8 cut(s)	59, 79, 147, 198, 379, 407, 473, 495
DdeI	CTNAG	3 cut(s)	75, 139, 474
DpnI	GATC	4 cut(s)	105, 156, 488, 521
DpnII	GATC	4 cut(s)	103, 154, 486, 519
EaeI	YGGCCR	1 cut(s)	493
Ecl136II	GAGCTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	149
Eco53kI	GAGCTC	1 cut(s)	147
Eco81I	CCTNAGG	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	496
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	125
FaeI	CATG	1 cut(s)	500
FaiI	YATR	3 cut(s)	447, 498, 534
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	496
FriOI	GRGCYC	1 cut(s)	149
GlaI	GCGC	2 cut(s)	318, 375
HaeIII	GGCC	1 cut(s)	495
HapII	CCGG	2 cut(s)	220, 234
HgaI	GACGC	2 cut(s)	178, 239
HhaI	GCGC	2 cut(s)	319, 376
Hin1I	GRCGYC	2 cut(s)	134, 231
Hin1II	CATG	1 cut(s)	500
Hin6I	GCGC	2 cut(s)	317, 374
HinP1I	GCGC	2 cut(s)	317, 374
HinfI	GANTC	4 cut(s)	116, 161, 264, 563
HpaII	CCGG	2 cut(s)	220, 234
HphI	GGTGA	3 cut(s)	115, 316, 558
Hpy166II	GTNNAC	3 cut(s)	54, 268, 397
Hpy188I	TCNGA	5 cut(s)	103, 115, 151, 175, 462
Hpy188III	TCNNGA	3 cut(s)	158, 193, 557
Hpy8I	GTNNAC	3 cut(s)	54, 268, 397
Hpy99I	CGWCG	3 cut(s)	155, 212, 219
HpyAV	CCTTC	1 cut(s)	248
HpyCH4III	ACNGT	4 cut(s)	11, 215, 328, 512
HpyCH4IV	ACGT	3 cut(s)	22, 134, 321
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	7 cut(s)	70, 76, 79, 186, 195, 204, 316
HpyF3I	CTNAG	3 cut(s)	75, 139, 474
HpySE526I	ACGT	3 cut(s)	22, 134, 321
Hsp92I	GRCGYC	2 cut(s)	134, 231
Hsp92II	CATG	1 cut(s)	500
HspAI	GCGC	2 cut(s)	317, 374
KspI	CCGCGG	1 cut(s)	202
Kzo9I	GATC	4 cut(s)	103, 154, 486, 519
LmnI	GCTCC	4 cut(s)	144, 152, 314, 559
LpnPI	CCDG	6 cut(s)	92, 126, 212, 233, 247, 570
Lsp1109I	GCAGC	3 cut(s)	51, 198, 366
MaeII	ACGT	3 cut(s)	22, 134, 321
MaeIII	GTNAC	5 cut(s)	121, 190, 322, 328, 506
MalI	GATC	4 cut(s)	105, 156, 488, 521
MboI	GATC	4 cut(s)	103, 154, 486, 519
MboII	GAAGA	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	149
MlsI	TGGCCA	1 cut(s)	495
MluI	ACGCGT	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	1 cut(s)	174
MnlI	CCTC	7 cut(s)	43, 70, 84, 148, 284, 406, 533
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	1 cut(s)	339
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	1 cut(s)	201
MspI	CCGG	2 cut(s)	220, 234
MspR9I	CCNGG	2 cut(s)	221, 235
MvnI	CGCG	3 cut(s)	201, 376, 386
MwoI	GCNNNNNNNGC	7 cut(s)	70, 76, 79, 186, 195, 204, 316
NciI	CCSGG	2 cut(s)	221, 235
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	4 cut(s)	103, 154, 486, 519
NlaIII	CATG	1 cut(s)	500
NmuCI	GTSAC	4 cut(s)	121, 190, 322, 506
NspV	TTCGAA	2 cut(s)	467, 482
PfeI	GAWTC	3 cut(s)	116, 161, 563
PflFI	GACNNNGTC	1 cut(s)	263
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PshAI	GACNNNNGTC	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	149
PsyI	GACNNNGTC	1 cut(s)	263
SacI	GAGCTC	1 cut(s)	149
SacII	CCGCGG	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	103, 154, 486, 519
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	2 cut(s)	221, 235
SduI	GDGCHC	1 cut(s)	149
Sfr303I	CCGCGG	1 cut(s)	202
SfuI	TTCGAA	2 cut(s)	467, 482
SgrBI	CCGCGG	1 cut(s)	202
SsiI	CCGC	7 cut(s)	68, 71, 80, 199, 201, 204, 376
SstI	GAGCTC	1 cut(s)	149
StyD4I	CCNGG	2 cut(s)	219, 233
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	4 cut(s)	11, 215, 328, 512
TaiI	ACGT	3 cut(s)	25, 137, 324
TaqI	TCGA	2 cut(s)	467, 482
TauI	GCSGC	7 cut(s)	70, 73, 82, 201, 204, 207, 379
TfiI	GAWTC	3 cut(s)	116, 161, 563
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	16, 515
TseFI	GTSAC	4 cut(s)	121, 190, 322, 506
TseI	GCWGC	3 cut(s)	64, 186, 379
Tsp45I	GTSAC	4 cut(s)	121, 190, 322, 506
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	2 cut(s)	16, 515
Tth111I	GACNNNGTC	1 cut(s)	263
VspI	ATTAAT	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.