Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8208784.1

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 723

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8208784.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 434 bp

gggtttatggtagaggtgtctatcttgctcctgatgattcacctttggaatgtttggaaaacttgagtgaagatgaagacggtcttcggcatcttttgctttgccgtgtgattttggggaagccggaagttgtgctgcctggtaattctgaacagtatcatcccagttcgcaagagtttgattcgggtgtggacaggcttttcgctcccaagaagtatatagtgtggagtactcacatgaacactcatatcttgccggagtatgtcatcagcttcagagctcctacttgcctgaaagagttcttgaagactcgggaaccaattagaaaaccaacttcaccatggatgccaattccaactctaatcagtgtgctttccaagttcttgcctcagcctagcattgctttgatcatcaagtatcataaagcccacaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

144

Amino Acids

16.48

Weight (kDa)

7.9

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	258
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	306
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	2 cut(s)	272, 280
AluI	AGCT	2 cut(s)	272, 280
Alw21I	GWGCWC	1 cut(s)	282
Ama87I	CYCGRG	1 cut(s)	311
ApeKI	GCWGC	1 cut(s)	135
ArsI	GACNNNNNNTTYG	2 cut(s)	184, 216
Asp700I	GAANNNNTTC	1 cut(s)	298
AsuHPI	GGTGA	2 cut(s)	32, 329
AvaI	CYCGRG	1 cut(s)	311
BanII	GRGCYC	1 cut(s)	282
BbsI	GAAGAC	3 cut(s)	76, 83, 313
Bbv12I	GWGCWC	1 cut(s)	282
BbvCI	CCTCAGC	1 cut(s)	389
BbvI	GCAGC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	140
BclI	TGATCA	1 cut(s)	407
BfaI	CTAG	1 cut(s)	395
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	140
BmeT110I	CYCGRG	1 cut(s)	311
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	140
BmrI	ACTGGG	1 cut(s)	158
BmsI	GCATC	2 cut(s)	99, 335
BmuI	ACTGGG	1 cut(s)	158
BpiI	GAAGAC	3 cut(s)	76, 83, 313
Bpu10I	CCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	84
BsaJI	CCNNGG	1 cut(s)	340
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	2 cut(s)	159, 350
BseMI	GCAATG	1 cut(s)	398
BseMII	CTCAG	1 cut(s)	403
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	2 cut(s)	124, 256
BsoBI	CYCGRG	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	407
Bsp19I	CCATGG	1 cut(s)	340
BspCNI	CTCAG	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	398
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	340
BssMI	GATC	1 cut(s)	407
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	82, 155
BstAPI	GCANNNNNTGC	1 cut(s)	96
BstDEI	CTNAG	1 cut(s)	389
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	2 cut(s)	159, 350
BstKTI	GATC	1 cut(s)	410
BstMBI	GATC	1 cut(s)	407
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstV1I	GCAGC	1 cut(s)	122
BstV2I	GAAGAC	3 cut(s)	76, 83, 313
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	159, 350
BtsIMutI	CAGTG	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	2 cut(s)	237, 341
CviJI	RGCY	6 cut(s)	123, 198, 272, 280, 393, 427
CviKI_1	RGCY	6 cut(s)	123, 198, 272, 280, 393, 427
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	1 cut(s)	389
DpnI	GATC	1 cut(s)	409
DpnII	GATC	1 cut(s)	407
Ecl136II	GAGCTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	280
Eco57I	CTGAAG	1 cut(s)	258
Eco88I	CYCGRG	1 cut(s)	311
EcoICRI	GAGCTC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	240, 344
FaiI	YATR	8 cut(s)	8, 218, 220, 238, 248, 263, 342, 422
FalI	AAGNNNNNCTT	2 cut(s)	68, 100
FatI	CATG	2 cut(s)	236, 340
FbaI	TGATCA	1 cut(s)	407
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	146, 357
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	136
FspBI	CTAG	1 cut(s)	395
GluI	GCNGC	1 cut(s)	136
HapII	CCGG	2 cut(s)	124, 256
Hin1II	CATG	2 cut(s)	240, 344
HinfI	GANTC	3 cut(s)	37, 181, 309
HpaII	CCGG	2 cut(s)	124, 256
HphI	GGTGA	2 cut(s)	32, 329
Hpy166II	GTNNAC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	150, 277
Hpy188III	TCNNGA	3 cut(s)	31, 303, 313
Hpy8I	GTNNAC	1 cut(s)	192
HpyCH4III	ACNGT	2 cut(s)	82, 155
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	240, 344
Ksp22I	TGATCA	1 cut(s)	407
Kzo9I	GATC	1 cut(s)	407
LmnI	GCTCC	3 cut(s)	33, 210, 285
LpnPI	CCDG	8 cut(s)	44, 125, 137, 152, 177, 180, 269, 304
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	99, 335
MaeI	CTAG	1 cut(s)	395
MalI	GATC	1 cut(s)	409
MboI	GATC	1 cut(s)	407
MboII	GAAGA	4 cut(s)	76, 82, 88, 318
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	3 cut(s)	144, 320, 350
MlyI	GAGTC	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	379
MnlI	CCTC	2 cut(s)	7, 398
MroXI	GAANNNNTTC	1 cut(s)	298
MspI	CCGG	2 cut(s)	124, 256
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	1 cut(s)	96
NcoI	CCATGG	1 cut(s)	340
NdeII	GATC	1 cut(s)	407
NlaIII	CATG	2 cut(s)	240, 344
NlaIV	GGNNCC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	298
PfeI	GAWTC	2 cut(s)	37, 181
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	303
PpsI	GAGTC	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SacI	GAGCTC	1 cut(s)	282
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	407
ScaI	AGTACT	1 cut(s)	231
SchI	GAGTC	1 cut(s)	303
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	282
SetI	ASST	4 cut(s)	18, 45, 274, 282
SfaNI	GCATC	2 cut(s)	99, 335
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	144, 320, 350
SspMI	CTAG	1 cut(s)	395
SstI	GAGCTC	1 cut(s)	282
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	82, 155
TasI	AATT	3 cut(s)	144, 320, 350
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	37, 181
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	89, 253
TspRI	CASTG	1 cut(s)	372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	298
XspI	CTAG	1 cut(s)	395
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.