Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Forward (+)

14821535 .. 14824542

Gene Structure 3008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G173700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

ATGGCGTGTAGCGGTGTTCAAGGTCGGTTGTCCTCTGTTTTCACCGATGGGAGCAACCCTCATGGTTTTACAGCGTTTTCTTCTGAAAATTCGTCCGAAGATGAACTCACCGATCAACTTACCGATTCGGGTACGAGCGATACGGCCTCAGAGACCTCCGTCCAAGATCAAGATTCGTTCATCTCCGACTGCGAAAGTGTCGTAGATTCGGGTTCCAGTTCTGCGCAATCGCGGATGTTCAATGACGGGTTGGTCGCACTTTTCGACGGGGACAGAGTCCACGATCTCATCAAGCAGAGGTTTGTTTCAAGTTTGGGTTTGCTTGGACCGCACGCCAATGTTGTGGCCATTCATAGAAACTCCTATTCTAGCCTTGTGGGGCAAGCAAGGCTGCGTTCGTTTCAAATTTACTTGAAAGCCGTGGAGGAGAAATGTGGTGGCAATCCCAATGTGAAATATGCTTGGTATGCACCTTCTTCTAAGGATGAGATTTCTAAGATCATCTGCCATGGTTTTGGTCACCATGAGAAGCCTCAGAAAGATGGGTTATACGGCAGTGGCGTCTACCTTGCTCCTGATGATTCTCCTATGACATGTGTGGAAGGCTCCAATGTTGATGAAGACGGTCTGCGACATCTTTTGCTCTGCCGTGTTATATTGGGGAGGCCAGAGGTTGTGCATCCTGGTTCTGAACAGTATCATCCAAGTTCCGAAGAGTTCGATTCGGGTGTGGACAATCCTATTGCTCCGAAGAAGTATATAGTATGGAGCACCTACATGAACACACACATCTTGCCAGAATATGTCATTAGCTTCAGAGCTCCTACTTGCTTGAAAGGGTTCTTAAAGACTCAAGAATCAATTAAGAAACCAACTTCACCTTGGATGCCATTTCCAGCTCTAATTGGTGTACTTTCAAAGTTTTTGCCTCCACCTACCTTTGCTCTGATCAGCAAGCATTACAAAGATCACAGGGAGAACAAAATCTCAAGGCATGAACTAATACAAAGAGTGAGACAAATAGCAGGAGACAAGTTACTGGCTTCAATCATCAAATCTTTCAGAGCAAAGCAAATCAAAGGTTTGCAAAGGGTTGCTCAAAATGGAGACAGAAATGGGAAGGAATTCAAAAATAACACAGGCGGTGTAGATGAACAACCTATTCCTTTGTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

393

Amino Acids

43.14

Weight (kDa)

6.4

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	251
Acc16I	TGCGCA	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	564
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	12, 232, 329, 1143
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	88, 405, 1124
AcuI	CTGAAG	1 cut(s)	799
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	2 cut(s)	133, 912
AfiI	CCNNNNNNNGG	1 cut(s)	1172
AflIII	ACRYGT	1 cut(s)	593
AgsI	TTSAA	9 cut(s)	20, 241, 309, 404, 415, 835, 918, 1047, 1129
AjnI	CCWGG	1 cut(s)	682
AluBI	AGCT	3 cut(s)	813, 821, 899
AluI	AGCT	3 cut(s)	813, 821, 899
Alw21I	GWGCWC	2 cut(s)	773, 823
Alw26I	GTCTC	4 cut(s)	146, 1009, 1023, 1101
AoxI	GGCC	3 cut(s)	144, 345, 665
ApeKI	GCWGC	1 cut(s)	391
ApoI	RAATTY	3 cut(s)	88, 405, 1124
Asp700I	GAANNNNTTC	2 cut(s)	839, 1124
AspLEI	GCGC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	4 cut(s)	34, 100, 512, 870
AvaII	GGWCC	1 cut(s)	326
BalI	TGGCCA	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	823
BbsI	GAAGAC	1 cut(s)	627
Bbv12I	GWGCWC	2 cut(s)	773, 823
BbvI	GCAGC	1 cut(s)	378
BccI	CCATC	2 cut(s)	41, 536
BceAI	ACGGC	4 cut(s)	159, 404, 568, 633
BciT130I	CCWGG	1 cut(s)	684
BclI	TGATCA	1 cut(s)	948
BcoDI	GTCTC	4 cut(s)	146, 1009, 1023, 1101
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	1 cut(s)	392
BlsI	GCNGC	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	684
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	214, 607
BmrFI	CCNGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	688, 876
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	627
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpuEI	CTTGAG	2 cut(s)	837, 973
BsaHI	GRCGYC	1 cut(s)	561
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	420, 508, 881
Bsc4I	CCNNNNNNNGG	1 cut(s)	1172
Bse1I	ACTGG	2 cut(s)	216, 1044
BseBI	CCWGG	1 cut(s)	684
BseDI	CCNNGG	3 cut(s)	420, 508, 881
BseGI	GGATG	5 cut(s)	240, 490, 679, 700, 891
BseLI	CCNNNNNNNGG	1 cut(s)	1172
BseMII	CTCAG	2 cut(s)	162, 548
BseNI	ACTGG	2 cut(s)	216, 1044
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	3 cut(s)	146, 347, 667
BsiHKAI	GWGCWC	2 cut(s)	773, 823
BslFI	GGGAC	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	1172
BsmAI	GTCTC	4 cut(s)	146, 1009, 1023, 1101
BsmFI	GGGAC	1 cut(s)	284
BsnI	GGCC	3 cut(s)	146, 347, 667
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	773, 823
Bsp143I	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
Bsp19I	CCATGG	1 cut(s)	508
BspACI	CCGC	4 cut(s)	12, 232, 329, 1143
BspANI	GGCC	3 cut(s)	146, 347, 667
BspCNI	CTCAG	2 cut(s)	161, 547
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	214, 607
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	216, 1044
BssECI	CCNNGG	3 cut(s)	420, 508, 881
BssMI	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	2 cut(s)	508, 881
Bst2UI	CCWGG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	626, 696
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	333, 384, 956
BstDEI	CTNAG	4 cut(s)	148, 480, 495, 534
BstDSI	CCRYGG	2 cut(s)	420, 508
BstEII	GGTNACC	1 cut(s)	518
BstF5I	GGATG	5 cut(s)	240, 490, 679, 700, 891
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	6 cut(s)	115, 169, 286, 501, 951, 970
BstMAI	GTCTC	4 cut(s)	146, 1009, 1023, 1101
BstMBI	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 388, 467
BstNI	CCWGG	1 cut(s)	684
BstNSI	RCATGY	1 cut(s)	597
BstPAI	GACNNNNGTC	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	518
BstSCI	CCNGG	1 cut(s)	682
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	378
BstV2I	GAAGAC	1 cut(s)	627
BstXI	CCANNNNNNTGG	2 cut(s)	343, 515
BsuRI	GGCC	3 cut(s)	146, 347, 667
BtgI	CCRYGG	2 cut(s)	420, 508
BtsCI	GGATG	5 cut(s)	240, 490, 679, 700, 891
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	562
Cac8I	GCNNGC	3 cut(s)	333, 384, 956
CfoI	GCGC	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	326
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	132, 911
CviAII	CATG	6 cut(s)	62, 509, 524, 594, 778, 995
CviQI	GTAC	2 cut(s)	132, 911
DdeI	CTNAG	4 cut(s)	148, 480, 495, 534
DpnI	GATC	6 cut(s)	114, 168, 285, 500, 950, 969
DpnII	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
DrdI	GACNNNNNNGTC	1 cut(s)	251
DseDI	GACNNNNNNGTC	1 cut(s)	251
EaeI	YGGCCR	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Ecl136II	GAGCTC	1 cut(s)	821
Eco130I	CCWWGG	2 cut(s)	508, 881
Eco24I	GRGCYC	1 cut(s)	823
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	326
Eco53kI	GAGCTC	1 cut(s)	821
Eco57I	CTGAAG	1 cut(s)	799
Eco91I	GGTNACC	1 cut(s)	518
EcoICRI	GAGCTC	1 cut(s)	821
EcoO65I	GGTNACC	1 cut(s)	518
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	1 cut(s)	682
EcoT14I	CCWWGG	2 cut(s)	508, 881
EcoT38I	GRGCYC	1 cut(s)	823
ErhI	CCWWGG	2 cut(s)	508, 881
FaeI	CATG	6 cut(s)	65, 512, 527, 597, 781, 998
FaqI	GGGAC	1 cut(s)	284
FatI	CATG	6 cut(s)	61, 508, 523, 593, 777, 994
FbaI	TGATCA	1 cut(s)	948
FblI	GTMKAC	1 cut(s)	564
Fnu4HI	GCNGC	1 cut(s)	392
FokI	GGATG	5 cut(s)	247, 497, 666, 687, 898
FriOI	GRGCYC	1 cut(s)	823
Fsp4HI	GCNGC	1 cut(s)	392
FspBI	CTAG	1 cut(s)	369
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	146, 347, 667
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	226
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	6 cut(s)	65, 512, 527, 597, 781, 998
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	8 cut(s)	125, 173, 206, 276, 581, 722, 850, 857
HphI	GGTGA	4 cut(s)	34, 100, 512, 870
Hpy166II	GTNNAC	4 cut(s)	280, 565, 733, 911
Hpy188III	TCNNGA	3 cut(s)	170, 575, 854
Hpy8I	GTNNAC	4 cut(s)	280, 565, 733, 911
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	483, 596, 1114
HpyCH4III	ACNGT	2 cut(s)	626, 696
HpyCH4V	TGCA	3 cut(s)	470, 679, 1087
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 388, 467
HpyF3I	CTNAG	4 cut(s)	148, 480, 495, 534
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	65, 512, 527, 597, 781, 998
HspAI	GCGC	1 cut(s)	224
Ksp22I	TGATCA	1 cut(s)	948
Kzo9I	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
LmnI	GCTCC	6 cut(s)	51, 577, 611, 751, 768, 826
Lsp1109I	GCAGC	1 cut(s)	378
LweI	GCATC	2 cut(s)	688, 876
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	518, 1035
MalI	GATC	6 cut(s)	114, 168, 285, 500, 950, 969
MboI	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
MboII	GAAGA	6 cut(s)	72, 110, 468, 632, 725, 763
MhlI	GDGCHC	2 cut(s)	773, 823
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	5 cut(s)	88, 405, 861, 903, 1124
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	2 cut(s)	285, 844
MmeI	TCCRAC	1 cut(s)	210
Mox20I	TGGCCA	1 cut(s)	347
MroXI	GAANNNNTTC	2 cut(s)	839, 1124
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	2 cut(s)	845, 864
MslI	CAYNNNNRTG	2 cut(s)	336, 776
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	1 cut(s)	684
MvaI	CCWGG	1 cut(s)	684
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	328, 388, 467
NcoI	CCATGG	1 cut(s)	508
NdeII	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
NlaIII	CATG	6 cut(s)	65, 512, 527, 597, 781, 998
NlaIV	GGNNCC	2 cut(s)	214, 607
NmuCI	GTSAC	1 cut(s)	518
NsbI	TGCGCA	1 cut(s)	225
NspI	RCATGY	1 cut(s)	597
PciI	ACATGT	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	2 cut(s)	261, 558
PdmI	GAANNNNTTC	2 cut(s)	839, 1124
PfeI	GAWTC	6 cut(s)	125, 173, 206, 581, 722, 857
PflFI	GACNNNGTC	1 cut(s)	275
PkrI	GCNGC	1 cut(s)	393
PleI	GAGTC	2 cut(s)	284, 844
PpsI	GAGTC	2 cut(s)	284, 844
PscI	ACATGT	1 cut(s)	593
PshAI	GACNNNNGTC	1 cut(s)	158
Psp124BI	GAGCTC	1 cut(s)	823
Psp6I	CCWGG	1 cut(s)	682
PspEI	GGTNACC	1 cut(s)	518
PspGI	CCWGG	1 cut(s)	682
PspN4I	GGNNCC	2 cut(s)	214, 607
PspPI	GGNCC	1 cut(s)	326
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	2 cut(s)	133, 912
RsaNI	GTAC	2 cut(s)	132, 911
RseI	CAYNNNNRTG	2 cut(s)	336, 776
SacI	GAGCTC	1 cut(s)	823
SaqAI	TTAA	2 cut(s)	845, 864
SatI	GCNGC	1 cut(s)	392
Sau3AI	GATC	6 cut(s)	112, 166, 283, 498, 948, 967
Sau96I	GGNCC	1 cut(s)	326
SchI	GAGTC	2 cut(s)	285, 844
ScrFI	CCNGG	1 cut(s)	684
SduI	GDGCHC	2 cut(s)	773, 823
SfaNI	GCATC	2 cut(s)	688, 876
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	336, 776
SmlI	CTYRAG	2 cut(s)	852, 988
SmoI	CTYRAG	2 cut(s)	852, 988
Sse9I	AATT	5 cut(s)	88, 405, 861, 903, 1124
SsiI	CCGC	4 cut(s)	12, 232, 329, 1143
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	823
StyD4I	CCNGG	1 cut(s)	682
StyI	CCWWGG	2 cut(s)	508, 881
TaaI	ACNGT	2 cut(s)	626, 696
TaqI	TCGA	2 cut(s)	264, 720
TasI	AATT	5 cut(s)	88, 405, 861, 903, 1124
TatI	WGTACW	1 cut(s)	910
TfiI	GAWTC	6 cut(s)	125, 173, 206, 581, 722, 857
Tru1I	TTAA	2 cut(s)	845, 864
Tru9I	TTAA	2 cut(s)	845, 864
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	7 cut(s)	117, 169, 341, 633, 794, 1011, 1167
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	275
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	3 cut(s)	88, 405, 1124
XceI	RCATGY	1 cut(s)	597
XcmI	CCANNNNNNNNNTGG	1 cut(s)	879
XmiI	GTMKAC	1 cut(s)	564
XmnI	GAANNNNTTC	2 cut(s)	839, 1124
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.