Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Forward (+)

20021292 .. 20023188

Gene Structure 1897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g15500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGAGTACAGAAATGATTATCCAAATCTTTCTTCTGGAAATTCATCGGAAGATGAACGTAGCGACCAATTCTCCGATTCGGGAAATTCATCGGAAGACGACTCTGCCTCAGAGACCGTCCAGTCGTCGATCTCCGACTCCGAAAGCGTCGCCGATTCGGGTTCTTCGAGTTCCGGTAATCAATCTCGGCCGTTCGGTGATGGGTTGGTCCCACTTTTCGACGGAGACAGAGTTCACGACCTCATCAAGCAGCGGTTCCTTTCGAGTTTGGGATTGCTTGGGGCGCAAGCAAGTGTGGTGGCGGTTCACAGGAACTCCTACTCGAGCCTTGTGGGCCATGCAAGGCTGCGTTGCTTTCAAATTTACTTGAAAGCGGTGGAGGAGAAGTGCGGAGGAAATCCCAACGTGAAGTACGCTTGGTACGCGCCTTCTTCGAAAGACGAGATTTCGAAGATCATCTGCCATGGTTTCGGCAACTTTGAGCAGCCTCAGAGAGATGGGGTGTTCGGCAATGGTGTTTATCTTGCTTCTGATGATTCTCCTATGCAATGTGTGGAAAGCTTGAACGTTGACGAAGATGGTCTACGACATCTCCTGCTCTGCCGTGTGATACTGGGGAGGCCGGAGGTTGTGTGTCCCGGTTCTAAACAGCATCATCCGAGCTCCGAACAGTTCGATTCCGGCATCGACAGCATCTTTGCTCCCAAGAAGTACATAATTTGGAGTACGCACATGAACACTCACATCCTACCGGAGTATGTCATCAGCTTCAGAGCTCCTAATTGCTTGAAAGAATTTCTGAAGGTTCAAGAACCAATCAAGAAACCGACTTCGCCGTGGATGCCGTTTCCGGCGCTAATCAGCGTGCTTTCGAAGTTCTTGCCTCCACCTTCCATTGCCTTGATCGAGCAAGCATTACAAAGATCACAGAGAGAATGTGATTACAAGGCAGCAACTAATACAGAAAGTGAGACAAATTGCTGGGGACAAGTTACTGGCTTCAATTATCAAATCTTTCAGAGCCAAGCAAATCAAAACATTGCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

350

Amino Acids

38.59

Weight (kDa)

5.22

Isoelectric Point (pI)

60.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AccI	GTMKAC	1 cut(s)	583
AccII	CGCG	1 cut(s)	425
AciI	CCGC	4 cut(s)	253, 302, 374, 390
AclI	AACGTT	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	4 cut(s)	40, 85, 360, 794
AcuI	CTGAAG	2 cut(s)	754, 821
AfaI	GTAC	5 cut(s)	8, 413, 422, 713, 727
AgsI	TTSAA	6 cut(s)	359, 370, 565, 790, 809, 1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	16, 48
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
AluBI	AGCT	4 cut(s)	561, 663, 768, 776
AluI	AGCT	4 cut(s)	561, 663, 768, 776
Alw21I	GWGCWC	2 cut(s)	665, 778
Alw26I	GTCTC	3 cut(s)	107, 219, 965
Ama87I	CYCGRG	1 cut(s)	322
AoxI	GGCC	3 cut(s)	188, 334, 620
ApeKI	GCWGC	4 cut(s)	250, 346, 484, 950
ApoI	RAATTY	4 cut(s)	40, 85, 360, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	680, 712
AspLEI	GCGC	3 cut(s)	286, 427, 856
AspS9I	GGNCC	2 cut(s)	208, 334
AsuC2I	CCSGG	1 cut(s)	639
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	3 cut(s)	434, 449, 872
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	665, 778
BarI	GAAGNNNNNNTAC	2 cut(s)	567, 599
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	2 cut(s)	665, 778
BbvI	GCAGC	4 cut(s)	262, 333, 496, 962
BccI	CCATC	3 cut(s)	194, 491, 572
BceAI	ACGGC	4 cut(s)	175, 588, 820, 829
BcgI	CGANNNNNNTGC	2 cut(s)	862, 896
BcnI	CCSGG	1 cut(s)	639
BcoDI	GTCTC	3 cut(s)	107, 219, 965
BfoI	RGCGCY	1 cut(s)	857
BglI	GCCNNNNNGGC	1 cut(s)	333
BisI	GCNGC	4 cut(s)	251, 347, 485, 951
BlsI	GCNGC	4 cut(s)	252, 348, 486, 952
Bme1390I	CCNGG	1 cut(s)	639
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	208, 334
BmiI	GGNNCC	2 cut(s)	210, 257
BmrFI	CCNGG	1 cut(s)	639
BmrI	ACTGGG	1 cut(s)	623
BmsI	GCATC	4 cut(s)	661, 693, 702, 831
BmuI	ACTGGG	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	102
Bpu14I	TTCGAA	3 cut(s)	434, 449, 872
BpuMI	CCSGG	1 cut(s)	639
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	463, 836
BsaWI	WCCGGW	2 cut(s)	173, 751
Bse1I	ACTGG	3 cut(s)	121, 618, 1000
Bse3DI	GCAATG	4 cut(s)	517, 554, 894, 1038
BseDI	CCNNGG	2 cut(s)	463, 836
BseGI	GGATG	3 cut(s)	655, 744, 846
BseMI	GCAATG	4 cut(s)	517, 554, 894, 1038
BseMII	CTCAG	2 cut(s)	123, 503
BseNI	ACTGG	3 cut(s)	121, 618, 1000
BseRI	GAGGAG	1 cut(s)	395
BseX3I	CGGCCG	1 cut(s)	188
BseXI	GCAGC	4 cut(s)	262, 333, 496, 962
BseYI	CCCAGC	1 cut(s)	981
Bsh1236I	CGCG	1 cut(s)	425
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	190, 336, 622
BsiEI	CGRYCG	1 cut(s)	191
BsiHKAI	GWGCWC	2 cut(s)	665, 778
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	6 cut(s)	174, 623, 639, 681, 752, 851
BslFI	GGGAC	3 cut(s)	194, 621, 999
BsmAI	GTCTC	3 cut(s)	107, 219, 965
BsmFI	GGGAC	3 cut(s)	194, 621, 999
BsnI	GGCC	3 cut(s)	190, 336, 622
Bso31I	GGTCTC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	322
Bsp119I	TTCGAA	3 cut(s)	434, 449, 872
Bsp1286I	GDGCHC	2 cut(s)	665, 778
Bsp143I	GATC	4 cut(s)	129, 453, 903, 923
Bsp19I	CCATGG	1 cut(s)	463
BspACI	CCGC	4 cut(s)	253, 302, 374, 390
BspANI	GGCC	3 cut(s)	190, 336, 622
BspCNI	CTCAG	2 cut(s)	122, 502
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	2 cut(s)	210, 257
BspT104I	TTCGAA	3 cut(s)	434, 449, 872
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	4 cut(s)	517, 554, 894, 1038
BsrI	ACTGG	3 cut(s)	121, 618, 1000
BssECI	CCNNGG	2 cut(s)	463, 836
BssMI	GATC	4 cut(s)	129, 453, 903, 923
BssT1I	CCWWGG	1 cut(s)	463
Bst4CI	ACNGT	2 cut(s)	118, 672
BstBI	TTCGAA	3 cut(s)	434, 449, 872
BstC8I	GCNNGC	3 cut(s)	288, 866, 912
BstDEI	CTNAG	2 cut(s)	109, 489
BstDSI	CCRYGG	2 cut(s)	463, 836
BstF5I	GGATG	3 cut(s)	655, 744, 846
BstFNI	CGCG	1 cut(s)	425
BstH2I	RGCGCY	1 cut(s)	857
BstHHI	GCGC	3 cut(s)	286, 427, 856
BstKTI	GATC	4 cut(s)	132, 456, 906, 926
BstMAI	GTCTC	3 cut(s)	107, 219, 965
BstMBI	GATC	4 cut(s)	129, 453, 903, 923
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 333, 422, 690, 841
BstSCI	CCNGG	1 cut(s)	637
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	4 cut(s)	262, 333, 496, 962
BstV2I	GAAGAC	1 cut(s)	102
BstZI	CGGCCG	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	190, 336, 622
BtgI	CCRYGG	2 cut(s)	463, 836
BtsCI	GGATG	3 cut(s)	655, 744, 846
Cac8I	GCNNGC	3 cut(s)	288, 866, 912
CfoI	GCGC	3 cut(s)	286, 427, 856
Cfr13I	GGNCC	2 cut(s)	208, 334
CseI	GACGC	1 cut(s)	136
Csp6I	GTAC	5 cut(s)	7, 412, 421, 712, 726
CspCI	CAANNNNNGTGG	2 cut(s)	279, 314
CviAII	CATG	3 cut(s)	338, 464, 733
CviQI	GTAC	5 cut(s)	7, 412, 421, 712, 726
DdeI	CTNAG	2 cut(s)	109, 489
DpnI	GATC	4 cut(s)	131, 455, 905, 925
DpnII	GATC	4 cut(s)	129, 453, 903, 923
DrdI	GACNNNNNNGTC	1 cut(s)	121
DseDI	GACNNNNNNGTC	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	188
EagI	CGGCCG	1 cut(s)	188
Ecl136II	GAGCTC	2 cut(s)	663, 776
EclXI	CGGCCG	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	2 cut(s)	665, 778
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	188
Eco53kI	GAGCTC	2 cut(s)	663, 776
Eco57I	CTGAAG	2 cut(s)	754, 821
Eco88I	CYCGRG	1 cut(s)	322
EcoICRI	GAGCTC	2 cut(s)	663, 776
EcoT14I	CCWWGG	1 cut(s)	463
EcoT38I	GRGCYC	2 cut(s)	665, 778
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	3 cut(s)	341, 467, 736
FaiI	YATR	6 cut(s)	339, 465, 545, 716, 734, 759
FaqI	GGGAC	3 cut(s)	194, 621, 999
FatI	CATG	3 cut(s)	337, 463, 732
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	4 cut(s)	251, 347, 485, 951
FokI	GGATG	3 cut(s)	642, 731, 853
FriOI	GRGCYC	2 cut(s)	665, 778
Fsp4HI	GCNGC	4 cut(s)	251, 347, 485, 951
GlaI	GCGC	3 cut(s)	285, 426, 855
GluI	GCNGC	4 cut(s)	251, 347, 485, 951
GsaI	CCCAGC	1 cut(s)	985
HaeII	RGCGCY	1 cut(s)	857
HaeIII	GGCC	3 cut(s)	190, 336, 622
HapII	CCGG	6 cut(s)	174, 623, 639, 681, 752, 851
HgaI	GACGC	1 cut(s)	136
HhaI	GCGC	3 cut(s)	286, 427, 856
Hin1II	CATG	3 cut(s)	341, 467, 736
Hin6I	GCGC	3 cut(s)	284, 425, 854
HinP1I	GCGC	3 cut(s)	284, 425, 854
HincII	GTYRAC	1 cut(s)	571
HindII	GTYRAC	1 cut(s)	571
HindIII	AAGCTT	1 cut(s)	559
HinfI	GANTC	6 cut(s)	77, 101, 137, 155, 536, 677
HpaII	CCGG	6 cut(s)	174, 623, 639, 681, 752, 851
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	4 cut(s)	235, 307, 571, 584
Hpy188III	TCNNGA	5 cut(s)	36, 81, 236, 809, 820
Hpy8I	GTNNAC	4 cut(s)	235, 307, 571, 584
Hpy99I	CGWCG	3 cut(s)	130, 152, 224
HpyAV	CCTTC	3 cut(s)	438, 796, 900
HpyCH4III	ACNGT	2 cut(s)	118, 672
HpyCH4IV	ACGT	3 cut(s)	58, 405, 567
HpyCH4V	TGCA	3 cut(s)	341, 547, 1043
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 333, 422, 690, 841
HpyF3I	CTNAG	2 cut(s)	109, 489
HpySE526I	ACGT	3 cut(s)	58, 405, 567
Hsp92II	CATG	3 cut(s)	341, 467, 736
HspAI	GCGC	3 cut(s)	284, 425, 854
Kzo9I	GATC	4 cut(s)	129, 453, 903, 923
LmnI	GCTCC	3 cut(s)	668, 706, 781
Lsp1109I	GCAGC	4 cut(s)	262, 333, 496, 962
LweI	GCATC	4 cut(s)	661, 693, 702, 831
MaeII	ACGT	3 cut(s)	58, 405, 567
MaeIII	GTNAC	1 cut(s)	991
MalI	GATC	4 cut(s)	131, 455, 905, 925
MboI	GATC	4 cut(s)	129, 453, 903, 923
MboII	GAAGA	7 cut(s)	24, 62, 107, 156, 423, 463, 587
MhlI	GDGCHC	2 cut(s)	665, 778
MluCI	AATT	9 cut(s)	40, 68, 85, 360, 717, 781, 794, 976, 1003
MlyI	GAGTC	2 cut(s)	95, 131
MmeI	TCCRAC	1 cut(s)	159
MnlI	CCTC	8 cut(s)	118, 251, 373, 386, 498, 612, 619, 894
MspA1I	CMGCKG	1 cut(s)	253
MspI	CCGG	6 cut(s)	174, 623, 639, 681, 752, 851
MspR9I	CCNGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	5 cut(s)	283, 333, 422, 690, 841
NciI	CCSGG	1 cut(s)	639
NcoI	CCATGG	1 cut(s)	463
NdeII	GATC	4 cut(s)	129, 453, 903, 923
NlaIII	CATG	3 cut(s)	341, 467, 736
NlaIV	GGNNCC	2 cut(s)	210, 257
NmeAIII	GCCGAG	1 cut(s)	166
NspV	TTCGAA	3 cut(s)	434, 449, 872
PaeR7I	CTCGAG	1 cut(s)	322
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PfeI	GAWTC	4 cut(s)	77, 155, 536, 677
PkrI	GCNGC	4 cut(s)	252, 348, 486, 952
PleI	GAGTC	2 cut(s)	95, 131
PpsI	GAGTC	2 cut(s)	95, 131
Psp124BI	GAGCTC	2 cut(s)	665, 778
Psp1406I	AACGTT	1 cut(s)	567
PspFI	CCCAGC	1 cut(s)	981
PspN4I	GGNNCC	2 cut(s)	210, 257
PspPI	GGNCC	2 cut(s)	208, 334
PspXI	VCTCGAGB	1 cut(s)	322
RsaI	GTAC	5 cut(s)	8, 413, 422, 713, 727
RsaNI	GTAC	5 cut(s)	7, 412, 421, 712, 726
SacI	GAGCTC	2 cut(s)	665, 778
SatI	GCNGC	4 cut(s)	251, 347, 485, 951
Sau3AI	GATC	4 cut(s)	129, 453, 903, 923
Sau96I	GGNCC	2 cut(s)	208, 334
SchI	GAGTC	2 cut(s)	95, 131
ScrFI	CCNGG	1 cut(s)	639
SduI	GDGCHC	2 cut(s)	665, 778
SfaNI	GCATC	4 cut(s)	661, 693, 702, 831
Sfr274I	CTCGAG	1 cut(s)	322
SfuI	TTCGAA	3 cut(s)	434, 449, 872
SinI	GGWCC	1 cut(s)	208
SlaI	CTCGAG	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	322
SmoI	CTYRAG	1 cut(s)	322
Sse9I	AATT	9 cut(s)	40, 68, 85, 360, 717, 781, 794, 976, 1003
SsiI	CCGC	4 cut(s)	253, 302, 374, 390
SstI	GAGCTC	2 cut(s)	665, 778
StyD4I	CCNGG	1 cut(s)	637
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	2 cut(s)	118, 672
TaiI	ACGT	3 cut(s)	61, 408, 570
TasI	AATT	9 cut(s)	40, 68, 85, 360, 717, 781, 794, 976, 1003
TatI	WGTACW	2 cut(s)	6, 711
TfiI	GAWTC	4 cut(s)	77, 155, 536, 677
TseI	GCWGC	4 cut(s)	250, 346, 484, 950
TspDTI	ATGAA	4 cut(s)	33, 69, 78, 749
TspGWI	ACGGA	1 cut(s)	237
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	4 cut(s)	40, 85, 360, 794
XhoI	CTCGAG	1 cut(s)	322
XmiI	GTMKAC	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.