Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007192

Physical Location & Seq

Genomic Coordinates Forward (+)

25097944 .. 25099907

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G62520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGATTACGTGAGAACCCAAGTCGAAGCTGTTTTTGATGATTCTGAGCAAGATGGATCAACCATCTCTGAATCTGGAAGCTGCGATTCTTCTTCTGATCGATCTTTTGCTGACGAGCTTGGGCTTATGGAGTTGCTTGAAGGAGATAAAGCTCATGATTTGATCTATCGTAATTGTAAATCTGGTCTTGGTGATCAATGTCAGATTCTCTCTGTTCTTAGAAACGGATTTAGGAACGTTGGATCTCGTGCAAAGCTCAAGACTTTTCAGGTTTTTCAAGAGGCGGTGCAGATGAAACACGGTGGAGACGGTGGAGCTAAGGTGAAATACGGTTGGTGCTCTGTTTCGAAACATGAGCTTAAAACGATTTTTGAGTATGGGTTTAGCGAGCCGCTGAGGAATGATGGATCTTTTGGCCGTGGATTGTATCTCTCGCCGGATAATTCTCCTCTTGATTGTTTGAAGGATTCAGCTTCAGAATCAGAAGATGGGATGAGATTCTTGTTGCTTTGTAGAGTTCTACTTGGAAAATCAGAGATTGTTCCTCAAGGCTCGACTAGATCATGTCCAAGTTCACCAGAGTTTGATTCTGGTGTGGATGATTTAGTTTCTACGAAGAAGTATATTGTGTGGAGTACACACATGAACACTCATGTTTTGCCTGAGTTTCTTGTTTGCATCAAAGCTCCATTTAACCTAACTCGAAGTCCAAAGAGATTGAGATCACCATGGATGGCATTTCCTGTATTGATCAAAGCATTGTCCAAGTTTCTACCTCCTTCTCAAATACTTGTCATTCAGAAACATTACAAAGATCAACAAAATAGGAGAATTACACGGAGCGAACTAATCCAACGAGTCAGAAGCATAACCGGAGACAAGTTACTAGTTCACATCATCAAAGCTTGTGGACATAAAGTACAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009628 GO:0009651 GO:0009987 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0072593

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PARP RST

Protein Analysis

309

Amino Acids

34.62

Weight (kDa)

8.5

Isoelectric Point (pI)

58.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47720 AT5G62520 AT5G62520
fragaria_vesca	FvH4_5g05320
malus_domestica	MD06G1173800.v1.1 MD14G1180300.v1.1
prunus_persica	Prupe.5G173700_v2.0.a1 Prupe.5G173700_v2.0.a1
pyrus_communis	pycom06g15500 pycom14g15030
rosa_chinensis	RchiOBHm_Chr7g0193541
rosa_laevigata	RLG00000004264
rosa_multiflora	Rmu_co8208784.1_g000001 Rmu_sc0000282.1_g000002 Rmu_sc0006688.1_g000001 Rmu_sc0029611.1_g000001
rosa_roxburghii	Rroxscaffold_3G00262020
rosa_rugosa	Rorug07G0010000 Rorug07G0010000 Rorug07G0010100
rosa_samantha	Rh7AG136900 Rh7BG137200 Rh7CG140500 Rh7DG138300
rosa_wichuraiana	Rw7G011660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	284, 392
AclI	AACGTT	1 cut(s)	237
AclWI	GGATC	3 cut(s)	64, 250, 415
AcoI	YGGCCR	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	637, 921
AgsI	TTSAA	3 cut(s)	140, 278, 463
AhlI	ACTAGT	1 cut(s)	886
Alw21I	GWGCWC	1 cut(s)	341
Alw26I	GTCTC	2 cut(s)	300, 870
AlwI	GGATC	3 cut(s)	64, 250, 415
AoxI	GGCC	1 cut(s)	415
ApeKI	GCWGC	1 cut(s)	81
AsuHPI	GGTGA	4 cut(s)	203, 334, 567, 717
AsuII	TTCGAA	1 cut(s)	347
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	341
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	5 cut(s)	47, 71, 398, 482, 727
BceAI	ACGGC	1 cut(s)	402
BclI	TGATCA	2 cut(s)	193, 750
BcoDI	GTCTC	2 cut(s)	300, 870
BcuI	ACTAGT	1 cut(s)	886
BfaI	CTAG	2 cut(s)	558, 887
BisI	GCNGC	2 cut(s)	82, 392
BlsI	GCNGC	2 cut(s)	83, 393
BmsI	GCATC	1 cut(s)	687
Bpu10I	CCTNAGC	2 cut(s)	318, 395
Bpu14I	TTCGAA	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	242, 531
Bsa29I	ATCGAT	1 cut(s)	100
BsaAI	YACGTR	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	721
BsaJI	CCNNGG	2 cut(s)	418, 728
BsaWI	WCCGGW	1 cut(s)	872
BsaXI	ACNNNNNCTCC	2 cut(s)	306, 336
Bse8I	GATNNNNATC	1 cut(s)	721
BseCI	ATCGAT	1 cut(s)	100
BseDI	CCNNGG	2 cut(s)	418, 728
BseGI	GGATG	3 cut(s)	498, 604, 738
BseJI	GATNNNNATC	1 cut(s)	721
BseMII	CTCAG	3 cut(s)	36, 386, 654
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	68
BsgI	GTGCAG	1 cut(s)	308
BshFI	GGCC	1 cut(s)	417
BshVI	ATCGAT	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	437, 873
BsmAI	GTCTC	2 cut(s)	300, 870
BsmBI	CGTCTC	1 cut(s)	300
BsnI	GGCC	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	728
BspACI	CCGC	2 cut(s)	284, 392
BspANI	GGCC	1 cut(s)	417
BspCNI	CTCAG	3 cut(s)	37, 387, 655
BspDI	ATCGAT	1 cut(s)	100
BspHI	TCATGA	1 cut(s)	154
BspPI	GGATC	3 cut(s)	64, 250, 415
BspT104I	TTCGAA	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	418, 728
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	728
Bst2BI	CACGAG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	302, 311, 332
BstBAI	YACGTR	1 cut(s)	10
BstBI	TTCGAA	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	389
BstDEI	CTNAG	5 cut(s)	45, 218, 318, 395, 663
BstDSI	CCRYGG	2 cut(s)	418, 728
BstF5I	GGATG	3 cut(s)	498, 604, 738
BstMAI	GTCTC	2 cut(s)	300, 870
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	2 cut(s)	242, 407
BstYI	RGATCY	2 cut(s)	242, 407
Bsu15I	ATCGAT	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	417
BsuTUI	ATCGAT	1 cut(s)	100
BtgI	CCRYGG	2 cut(s)	418, 728
BtsCI	GGATG	3 cut(s)	498, 604, 738
Cac8I	GCNNGC	1 cut(s)	389
CciI	TCATGA	1 cut(s)	154
ClaI	ATCGAT	1 cut(s)	100
Csp6I	GTAC	2 cut(s)	636, 920
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviAII	CATG	6 cut(s)	155, 353, 564, 643, 653, 729
CviQI	GTAC	2 cut(s)	636, 920
DdeI	CTNAG	5 cut(s)	45, 218, 318, 395, 663
EaeI	YGGCCR	1 cut(s)	415
Eco130I	CCWWGG	1 cut(s)	728
Eco57I	CTGAAG	1 cut(s)	459
EcoT14I	CCWWGG	1 cut(s)	728
ErhI	CCWWGG	1 cut(s)	728
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	6 cut(s)	158, 356, 567, 646, 656, 732
FatI	CATG	6 cut(s)	154, 352, 563, 642, 652, 728
FbaI	TGATCA	2 cut(s)	193, 750
Fnu4HI	GCNGC	2 cut(s)	82, 392
FokI	GGATG	3 cut(s)	505, 611, 745
Fsp4HI	GCNGC	2 cut(s)	82, 392
FspBI	CTAG	2 cut(s)	558, 887
GluI	GCNGC	2 cut(s)	82, 392
HaeIII	GGCC	1 cut(s)	417
HapII	CCGG	2 cut(s)	437, 873
Hin1II	CATG	6 cut(s)	158, 356, 567, 646, 656, 732
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	9 cut(s)	41, 71, 86, 205, 467, 479, 498, 587, 858
HpaII	CCGG	2 cut(s)	437, 873
HphI	GGTGA	4 cut(s)	203, 334, 567, 717
Hpy166II	GTNNAC	4 cut(s)	575, 638, 892, 911
Hpy188I	TCNGA	9 cut(s)	46, 70, 97, 204, 478, 484, 535, 801, 863
Hpy188III	TCNNGA	5 cut(s)	75, 155, 259, 278, 452
Hpy8I	GTNNAC	4 cut(s)	575, 638, 892, 911
HpyAV	CCTTC	3 cut(s)	134, 457, 789
HpyCH4III	ACNGT	3 cut(s)	302, 311, 332
HpyCH4IV	ACGT	2 cut(s)	9, 237
HpyCH4V	TGCA	3 cut(s)	251, 289, 678
HpyF3I	CTNAG	5 cut(s)	45, 218, 318, 395, 663
HpySE526I	ACGT	2 cut(s)	9, 237
Hsp92II	CATG	6 cut(s)	158, 356, 567, 646, 656, 732
Ksp22I	TGATCA	2 cut(s)	193, 750
LmnI	GCTCC	3 cut(s)	314, 691, 840
LpnPI	CCDG	9 cut(s)	60, 168, 254, 450, 576, 591, 675, 756, 886
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	687
MaeI	CTAG	2 cut(s)	558, 887
MaeII	ACGT	2 cut(s)	9, 237
MaeIII	GTNAC	1 cut(s)	882
MboII	GAAGA	4 cut(s)	81, 84, 497, 628
MflI	RGATCY	2 cut(s)	242, 407
MhlI	GDGCHC	1 cut(s)	341
MluCI	AATT	3 cut(s)	172, 442, 831
MlyI	GAGTC	1 cut(s)	867
MmeI	TCCRAC	2 cut(s)	220, 877
MnlI	CCTC	5 cut(s)	274, 390, 459, 555, 786
MseI	TTAA	2 cut(s)	360, 693
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	2 cut(s)	437, 873
NcoI	CCATGG	1 cut(s)	728
NlaIII	CATG	6 cut(s)	158, 356, 567, 646, 656, 732
NspV	TTCGAA	1 cut(s)	347
PagI	TCATGA	1 cut(s)	154
PfeI	GAWTC	8 cut(s)	41, 71, 86, 205, 467, 479, 498, 587
PkrI	GCNGC	2 cut(s)	83, 393
PleI	GAGTC	1 cut(s)	866
PpsI	GAGTC	1 cut(s)	866
Ppu21I	YACGTR	1 cut(s)	10
Psp1406I	AACGTT	1 cut(s)	237
PsuI	RGATCY	2 cut(s)	242, 407
RsaI	GTAC	2 cut(s)	637, 921
RsaNI	GTAC	2 cut(s)	636, 920
SaqAI	TTAA	2 cut(s)	360, 693
SatI	GCNGC	2 cut(s)	82, 392
SchI	GAGTC	1 cut(s)	867
SduI	GDGCHC	1 cut(s)	341
SfaNI	GCATC	1 cut(s)	687
SfuI	TTCGAA	1 cut(s)	347
SmlI	CTYRAG	2 cut(s)	257, 546
SmoI	CTYRAG	2 cut(s)	257, 546
SpeI	ACTAGT	1 cut(s)	886
Sse9I	AATT	3 cut(s)	172, 442, 831
SsiI	CCGC	2 cut(s)	284, 392
SspMI	CTAG	2 cut(s)	558, 887
StyI	CCWWGG	1 cut(s)	728
TaaI	ACNGT	3 cut(s)	302, 311, 332
TaiI	ACGT	2 cut(s)	12, 240
TaqI	TCGA	5 cut(s)	24, 100, 347, 554, 703
TasI	AATT	3 cut(s)	172, 442, 831
TatI	WGTACW	2 cut(s)	635, 919
TauI	GCSGC	1 cut(s)	394
TfiI	GAWTC	8 cut(s)	41, 71, 86, 205, 467, 479, 498, 587
Tru1I	TTAA	2 cut(s)	360, 693
Tru9I	TTAA	2 cut(s)	360, 693
TseI	GCWGC	1 cut(s)	81
TspDTI	ATGAA	2 cut(s)	308, 659
TspGWI	ACGGA	2 cut(s)	240, 853
XspI	CTAG	2 cut(s)	558, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.